Updates to gh-actions and tests #13
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Separate into full production and simplified development workflows. Streamline workflow and fix github permissions production workflow to be updated after dev works
ensure suite_modular branch of GiottoData is used
try not installing GiottoData in actions, relying on the testthat.R script
catch up to main
Edit show functions for packed objects. Update workflow to specify GiottoClass for python environment installation
- Export `compatible_spatial_network()` - Export `get_distance()` - Edit `combine_metadata()` to use merge instead of cbind - Update `test_gobject.R` to not use conda
- Remove python env build on dev workflow. - try to silence deprecate_soft() warnings for internal function usage
- separate python env build from GiottoData installation in prod workflow - try to silence lifecycle for internal function
internals are deprecated for external use, but are still in use
- split off codecov as separate job again due to issues with finding the correct repo location - try to add lintr - styler run on classes.R - fix DT vars in combine_metadata.R
catch up to main
Update checks and gh-actions
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Separate into full production and simplified development workflows.
get codecov to work
tests now link to GiottoClass version of objects in GiottoData@suite_modular