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@jiajic jiajic released this 28 Aug 06:33
· 194 commits to main since this release
v0.3.5
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GiottoClass 0.3.5 (2024/08/28)

breaking changes

  • set_giotto_python_path() will now also initialize python env to set by default and print which python env is active, but otherwise do nothing if any python env has already been initialized.
  • deprecated readGiottoInstructions(), showGiottoInstructions(), changeGiottoInstructions(), replaceGiottoInstructions() in favor of instructions() generic

bug fixes

  • intensity images now automatically scale to estimated highest value
  • giottoPolygon plot() default max_poly raised to 1e6
  • giottoInstructions no longer lose class when specific params are replaced
  • ometif_to_tif() now checks for imagecodecs package as well
  • anndataToGiotto() and giottoToAnndata now check for anndata package as well.
  • fix joinGiottoObjects() "z_stack" join method
  • fix error in documentation #214 by shaojunyu
  • fix error in installGiottoEnvironment() #1006 by 13954380607

enhancements

  • print() method for giottoInstructions
  • rbind() for spatLocsObj
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