GiottoVisuals contains the main plotting functions of Giotto Suite
You can install GiottoVisuals like:
if (!requireNamespace("pak", quietly = TRUE)) install.packages("pak")
pak::pak("drieslab/GiottoVisuals")
aux_
- auxilliary and meta functionality
aux_output.R
- plot output handlingaux_save.R
- plot savingaux_defaults.R
- set plotting defaultsaux_visuals.R
- general auxilliary plotting functions
plot_
- general plotting functions organized by type of plot
plot_scatter.R
- scatter plotsplot_violin.R
- violin plotsplot_heatmap.R
- heatmapsplot_dendrogram.R
- dendrograms
vis_
- specific plotting functions organized by topic - vis_hvf.R
-
highly variable features plots
vis_pc.R
- principle components plotsvis_spatial.R
- -vis_spatial_in_situ.R
-
gg_
- ggplot2 related
gg_info_layers.R
- modular internals for plotting the different layers of information- ``
Other:
-
color_palettes.R
- color palettes and factory functions -
vis_spatialDE.R
-
Package:
package_imports.R
- all importsglobals.R
- global variablesdd.R
- dummy documentation for inheritingzzz.R
- onloads