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dbMatrix summary methods now return
dbDenseMatrixobjects instead of in-memory vectors. -
Removed colTypes from castNumeric.
-
Removed @name check in initialize.
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New
computemethod for saving dbMatrix objects. This writes the dbMatrix object to a table in the database along with its row and column names (e.g. 'dbMatrixname_rownames'). -
New
loadmethod for loading computed dbMatrix objects. The dbMatrix::compute() method must be called before loading the object. -
Updated
.check_overwriteto allow for passing overwrite arg. -
New internal function
write_dimnamesto enable saving dbMatrix objects. -
New
summethod for dbMatrix objects. -
Improvements to precomputed table: Use existing precomputed table in db if available.
-
Improvements to precomputed table: Transpose precomputed table of sufficient dimensions if it exists instead of creating a new one. This is done via a TEMPORARY VIEW to avoid writing to disk and modifying existing precomputed table which may be referenced by other tables.
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Custom SQL statement for
todbDenseconversion creates a TEMPORARY VIEW with namedbDenseMatrix_hash.
-
Update whitespace.
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Update dbMatrix constructor roxygen.
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Update roxygen in toDbDense.
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Update reference page.
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Update mean documentation.
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Update log documentation.
-
Update roxygen.
- Do not recycle matrix if not needed.
- Rename dbMatrix constructor to
dbMatrix::dbMatrix().
-
Add more tests for
dbMatrixanddbDenseMatrix. -
Add internal function
map_ijx_dimnames. -
Add internal function
dbMatrix_from_tbl. -
Extract now constructs unique temporary virtual tables in the arrow schema.
-
Document pkgdown website.
-
Add
clito imports. -
Update generics.
-
Be more explicit about non-supported
ArithandOpsoperations. -
Fix
show()method fordbDenseMatrixobjects.
-
Improve show function for dbDenseMatrix.
-
Updated simulate functions to include overwrite param.
-
Update .check_overwrite() internal function to avoid bug in overwritting passed table.
- Add initial support for reading in .mtx files and creating dbMatrix objects.
- Update
check_overwriteinput validation
- Update Royxgen
-
Add new
precomputefunction to speed up matrix densification. -
Add new show function for dbDenseMatrix with pretty color and better spacing.
-
Add new
savefunction to save adbMatrix. -
Add new input validation functions.
-
Update docs.
-
Update imports to include
glue,bit64andcrayon.
-
Update constructor calls in
simfunctions. -
Remove redundant
confrom constructor. -
Remove
db_pathfrom constructor. -
Constructor
db_patharg change toconobject.
- Add
dgTMatrixto in-memory matrix types supported indbMatrixconstructor.
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Set :memory: to default db_path in constructor.
-
Update createDBMatrix docs.
-
Spacing.
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Update after constructor fix.
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Remove :temp: in place of :memory:.
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Remove ":temp:" from tests.
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Replace ':temp:' with ':memory:'.
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Add matrix in addition to dgCMatrix in as_ijx().
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Add unit tests for scalar arith.
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Add unit tests for names.R.
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Remove random browser() call.
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Add
MatrixGenericsto deps. -
Update gitignore.
-
Add boolean indexing tests to
test-extract.R. -
Add as_ijx() convenience function.
-
Update createDBMatrix() to use dplyr::copy_to().
-
Update as_matrix() convenience function.
-
Add unit tests for extract methods.
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Add log().
-
Update toDbDense to use dplyr instead of SQL.
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Update DESCRIPTION to include testthat.
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Update docs.
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update dbIndex superclass
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update as_matrix()
- Rename and update dbIndex superclass to fix indexing bugs.
- Add experimental as_matrix() convenience function.
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Update docs.
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Migrate site link to drieslab.
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Move {Matrix} to Imports.
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Update overview.Rmd.
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Update operations vignette.
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Only densify if necessary. != 0, +/-.
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toDbDense() previously updated table by value. change to update by reference via VIEW creation of table named 'dense'.
- Add dbListTables().
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Update docs.
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Update gitignore.
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Fix incorrect aggregate operations.
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Fixes after con slot removal.
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Add get_con().
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Add dbDisconnect() generic.
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Update accessors.
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Update vignettes.
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Update README.
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Update gitignore.
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Update docs.
-
Update NEWS.
- migrate to |> pipe, remove %>%, update deps.
- Update docs.
- Mean generic for dbDenseMatrix.
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Update docs.
-
Update site.
-
Update gitignore.
-
Updates to dbSparseMatrix rowMeans, colMeans.
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Updates to colSums and rowSums for dbSparseMatrix.
-
Update dbMatrix constructor dimnames issues.
-
Update DESCRIPTION, remove redundant Matrix import, dep.
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Update docs.
-
Update roxygen for operations.
- Add Matrix as dep.
- Methods::as scope correction.
- Add methods to deps.
- Update .gitignore.
- Add Matrix as pkg dep
- Missing Matrix:: scope call.
- Update docs.
dimsanddim_namesincreateDBMatrix()retained from in-memory matrix or Matrix object
- Update docs for dbMatrix input checks
- Specify checks for 'name' param in
createDBMatrix()
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Update docs.
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Add docs.
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Update docs and DESCRIPTION.
-
Migration dbMatrix.