Merge branch 'main' into dev

.github/.gitignore

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+/pkg.lock

.github/workflows/R-CMD-check-dev.yaml

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+# This workflow calls the GitHub API very frequently.
+# Can't be run as part of commits
+on:
+  schedule:
+    - cron: "5 0 * * *" # 05:00 UTC every day only run on main branch
+  push:
+    branches:
+      - "cran-*"
+    tags:
+      - "v*"
+
+name: rcc dev
+
+jobs:
+  matrix:
+    runs-on: ubuntu-20.04
+    outputs:
+      matrix: ${{ steps.set-matrix.outputs.matrix }}
+
+    name: Collect deps
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - uses: ./.github/workflows/rate-limit
+        with:
+          token: ${{ secrets.GITHUB_TOKEN }}
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          install-r: false
+
+      - id: set-matrix
+        uses: ./.github/workflows/dep-matrix
+
+  check-matrix:
+    runs-on: ubuntu-22.04
+    needs: matrix
+
+    name: Check deps
+
+    steps:
+      - name: Install json2yaml
+        run: |
+          sudo npm install -g json2yaml
+
+      - name: Check matrix definition
+        run: |
+          matrix='${{ needs.matrix.outputs.matrix }}'
+          echo $matrix
+          echo $matrix | jq .
+          echo $matrix | json2yaml
+
+  R-CMD-check-base:
+    runs-on: ubuntu-22.04
+
+    name: base
+
+    # Begin custom: services
+    # End custom: services
+
+    strategy:
+      fail-fast: false
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - uses: ./.github/workflows/custom/before-install
+        if: hashFiles('.github/workflows/custom/before-install/action.yml') != ''
+
+      - uses: ./.github/workflows/install
+        with:
+          install-r: false
+          cache-version: rcc-dev-base-1
+          needs: check
+          extra-packages: "any::rcmdcheck any::remotes ."
+          token: ${{ secrets.GITHUB_TOKEN }}
+
+      - name: Session info
+        run: |
+          options(width = 100)
+          if (!requireNamespace("sessioninfo", quietly = TRUE)) install.packages("sessioninfo")
+          pkgs <- installed.packages()[, "Package"]
+          sessioninfo::session_info(pkgs, include_base = TRUE)
+        shell: Rscript {0}
+
+      - uses: ./.github/workflows/custom/after-install
+        if: hashFiles('.github/workflows/custom/after-install/action.yml') != ''
+
+      - uses: ./.github/workflows/update-snapshots
+        if: github.event_name != 'pull_request' || github.event.pull_request.head.repo.full_name == github.repository
+
+      - uses: ./.github/workflows/check
+        with:
+          results: ${{ matrix.package }}
+
+  R-CMD-check-dev:
+    needs:
+      - matrix
+      - R-CMD-check-base
+
+    runs-on: ubuntu-22.04
+
+    name: ${{ matrix.package }}
+
+    # Begin custom: services
+    # End custom: services
+
+    strategy:
+      fail-fast: false
+      matrix: ${{fromJson(needs.matrix.outputs.matrix)}}
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - uses: ./.github/workflows/custom/before-install
+        if: hashFiles('.github/workflows/custom/before-install/action.yml') != ''
+
+      - uses: ./.github/workflows/install
+        with:
+          install-r: false
+          cache-version: rcc-dev-${{ matrix.package }}-1
+          needs: check
+          extra-packages: "any::rcmdcheck any::remotes ."
+          token: ${{ secrets.GITHUB_TOKEN }}
+
+      - name: Install dev version of ${{ matrix.package }}
+        env:
+          GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+        run: |
+          remotes::install_dev("${{ matrix.package }}", "https://cloud.r-project.org", upgrade = "always")
+        shell: Rscript {0}
+
+      - name: Session info
+        run: |
+          options(width = 100)
+          if (!requireNamespace("sessioninfo", quietly = TRUE)) install.packages("sessioninfo")
+          pkgs <- installed.packages()[, "Package"]
+          sessioninfo::session_info(pkgs, include_base = TRUE)
+        shell: Rscript {0}
+
+      - uses: ./.github/workflows/custom/after-install
+        if: hashFiles('.github/workflows/custom/after-install/action.yml') != ''
+
+      - uses: ./.github/workflows/update-snapshots
+        if: github.event_name != 'pull_request' || github.event.pull_request.head.repo.full_name == github.repository
+
+      - uses: ./.github/workflows/check
+        with:
+          results: ${{ matrix.package }}

.github/workflows/R-CMD-check.yaml

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+# Workflow derived from https://github.com/r-lib/actions/tree/master/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+#
+# NOTE: This workflow is overkill for most R packages and
+# check-standard.yaml is likely a better choice.
+# usethis::use_github_action("check-standard") will install it.
+on:
+  push:
+    branches:
+      - main
+      - master
+  pull_request:
+    branches:
+      - main
+      - master
+  schedule:
+    - cron: "10 0 * * *"
+
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref }}-${{ github.head_ref || github.sha }}-${{ github.base_ref || '' }}
+  cancel-in-progress: true
+
+name: rcc
+
+jobs:
+  rcc-smoke:
+    runs-on: ubuntu-latest
+    outputs:
+      sha: ${{ steps.commit.outputs.sha }}
+
+    name: "Smoke test: stock R"
+
+    # Begin custom: services
+    # End custom: services
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - uses: ./.github/workflows/rate-limit
+        with:
+          token: ${{ secrets.GITHUB_TOKEN }}
+
+      - uses: ./.github/workflows/git-identity
+
+      - uses: ./.github/workflows/custom/before-install
+        if: hashFiles('.github/workflows/custom/before-install/action.yml') != ''
+
+      - uses: ./.github/workflows/install
+        with:
+          token: ${{ secrets.GITHUB_TOKEN }}
+          install-r: false
+          cache-version: rcc-smoke-1
+          needs: check
+          extra-packages: any::rcmdcheck any::roxygen2 r-lib/styler
+
+      - uses: ./.github/workflows/custom/after-install
+        if: hashFiles('.github/workflows/custom/after-install/action.yml') != ''
+
+      - uses: ./.github/workflows/update-snapshots
+        if: github.event_name != 'pull_request' || github.event.pull_request.head.repo.full_name == github.repository
+
+      - uses: ./.github/workflows/style
+        if: github.event_name != 'pull_request' || github.event.pull_request.head.repo.full_name == github.repository
+
+      - uses: ./.github/workflows/roxygenize
+        if: github.event_name != 'pull_request' || github.event.pull_request.head.repo.full_name == github.repository
+
+      - id: commit
+        if: github.event_name != 'pull_request' || github.event.pull_request.head.repo.full_name == github.repository
+        uses: ./.github/workflows/commit
+
+      - uses: ./.github/workflows/check
+        with:
+          results: ${{ runner.os }}-smoke-test
+
+  # Runs in a separate workflow, because it's using dev pkgdown
+  # which might bring in other dev dependencies
+  pkgdown:
+    needs: rcc-smoke
+
+    runs-on: ubuntu-latest
+
+    name: "pkgdown"
+
+    # Begin custom: services
+    # End custom: services
+
+    steps:
+      - uses: actions/checkout@v4
+        with:
+          ref: ${{ needs.rcc-smoke.outputs.sha }}
+
+      - uses: ./.github/workflows/rate-limit
+        with:
+          token: ${{ secrets.GITHUB_TOKEN }}
+
+      - uses: ./.github/workflows/git-identity
+        if: github.event_name == 'push'
+
+      - uses: ./.github/workflows/custom/before-install
+        if: hashFiles('.github/workflows/custom/before-install/action.yml') != ''
+
+      - uses: ./.github/workflows/install
+        with:
+          token: ${{ secrets.GITHUB_TOKEN }}
+          install-r: false
+          cache-version: pkgdown-1
+          needs: website
+          extra-packages: r-lib/pkgdown local::.
+
+      - uses: ./.github/workflows/custom/after-install
+        if: hashFiles('.github/workflows/custom/after-install/action.yml') != ''
+
+      - uses: ./.github/workflows/pkgdown-build
+        if: github.event_name != 'push'
+
+      - uses: ./.github/workflows/pkgdown-deploy
+        if: github.event_name == 'push'
+
+  # Windows checks can be run in parallel and independently
+  # when they alone take as long as the smoke and full tests combined.
+  # To achieve this, remove the "needs:" element below.
+  rcc-windows:
+    # Begin custom: early run
+    needs: rcc-smoke
+    # End custom: early run
+
+    runs-on: ${{ matrix.config.os }}
+
+    name: ${{ matrix.config.os }} (${{ matrix.config.r }}) ${{ matrix.config.desc }}
+
+    # Begin custom: services
+    # End custom: services
+
+    strategy:
+      fail-fast: false
+      matrix:
+        config:
+          - {os: windows-latest, r: 'release'}
+          # Use 3.6 to trigger usage of RTools35
+          - {os: windows-latest, r: '3.6'}
+
+    steps:
+      - uses: actions/checkout@v4
+        with:
+          ref: ${{ needs.rcc-smoke.outputs.sha }}
+
+      - uses: ./.github/workflows/custom/before-install
+        if: hashFiles('.github/workflows/custom/before-install/action.yml') != ''
+
+      - uses: ./.github/workflows/install
+        with:
+          r-version: ${{ matrix.config.r }}
+          cache-version: rcc-windows-1
+          token: ${{ secrets.GITHUB_TOKEN }}
+          needs: check
+
+      - uses: ./.github/workflows/custom/after-install
+        if: hashFiles('.github/workflows/custom/after-install/action.yml') != ''
+
+      - uses: ./.github/workflows/update-snapshots
+        if: github.event_name != 'pull_request' || github.event.pull_request.head.repo.full_name == github.repository
+
+      - uses: ./.github/workflows/check
+        with:
+          results: ${{ runner.os }}-r${{ matrix.config.r }}
+
+  rcc-full:
+    needs: rcc-smoke
+
+    runs-on: ${{ matrix.config.os }}
+
+    name: ${{ matrix.config.os }} (${{ matrix.config.r }}) ${{ matrix.config.desc }}
+
+    # Begin custom: services
+    # End custom: services
+
+    strategy:
+      fail-fast: false
+      matrix:
+        config:
+          - {os: macos-latest,   r: 'release'}
+
+          - {os: ubuntu-20.04,   r: 'release'}
+
+          # Use older ubuntu to maximise backward compatibility
+          - {os: ubuntu-22.04,   r: 'devel',     http-user-agent: 'release'}
+          - {os: ubuntu-22.04,   r: 'release',   covr: true,                  desc: 'with covr'}
+          - {os: ubuntu-22.04,   r: 'oldrel-1'}
+
+          # Begin custom: R 3.6
+          - {os: ubuntu-22.04,   r: 'oldrel-2'}
+          # End custom: R 3.6
+
+          # Begin custom: R 3.5
+          - {os: ubuntu-22.04,   r: 'oldrel-3'}
+          # End custom: R 3.5
+
+          # Begin custom: R 3.4
+          - {os: ubuntu-22.04,   r: 'oldrel-4'}
+          # End custom: R 3.4
+
+          # Begin custom: matrix elements
+          # End custom: matrix elements
+
+    steps:
+      - uses: actions/checkout@v4
+        with:
+          ref: ${{ needs.rcc-smoke.outputs.sha }}
+
+      - uses: ./.github/workflows/custom/before-install
+        if: hashFiles('.github/workflows/custom/before-install/action.yml') != ''
+
+      - uses: ./.github/workflows/install
+        with:
+          r-version: ${{ matrix.config.r }}
+          cache-version: rcc-full-1
+          token: ${{ secrets.GITHUB_TOKEN }}
+          needs: check
+
+      - uses: ./.github/workflows/custom/after-install
+        if: hashFiles('.github/workflows/custom/after-install/action.yml') != ''
+
+      - uses: ./.github/workflows/update-snapshots
+        if: github.event_name != 'pull_request' || github.event.pull_request.head.repo.full_name == github.repository
+
+      - uses: ./.github/workflows/check
+        with:
+          results: ${{ runner.os }}-r${{ matrix.config.r }}