From c89fe90ff3ec4ae192babcbb22152ae4c8006a12 Mon Sep 17 00:00:00 2001 From: Daniel Weindl Date: Mon, 9 Dec 2024 12:22:36 +0100 Subject: [PATCH] Bump version; release notes --- CHANGELOG.md | 42 ++++++++++++++++++++++++++++++++++++++++++ version.txt | 2 +- 2 files changed, 43 insertions(+), 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 3a46670e10..cba09d146c 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -4,6 +4,48 @@ See also our [versioning policy](https://amici.readthedocs.io/en/latest/versioni ## v0.X Series +### v0.30.0 (2024-12-10) + +*Please note that the amici JAX model generation introduced in v0.29.0 is +experimental, the API may substantially change in the future. +Use at your own risk and do not expect backward compatibility.* + +**Features** + +* Added serialisation for JAX models + + by @FFroehlich in https://github.com/AMICI-dev/AMICI/pull/2608 + +* Disabled building the C++ extension by default when generating a JAX model + + by @FFroehlich in https://github.com/AMICI-dev/AMICI/pull/2609 + +* Separate pre-equilibration and dynamic simulation in jax + + by @FFroehlich in https://github.com/AMICI-dev/AMICI/pull/2617 + +* State reinitialisation in JAX + + by @FFroehlich in https://github.com/AMICI-dev/AMICI/pull/2619 + +**Fixes** + +* Fixed ModelStateDerived copy ctor (fixes potential segfaults) + + by @dweindl in https://github.com/AMICI-dev/AMICI/pull/2612 + +* PEtab parameter mapping: fill in fixed parameter values for initial values + + by @dweindl in https://github.com/AMICI-dev/AMICI/pull/2613 + +* `nan`-safe log÷ for JAX models + + by @FFroehlich in https://github.com/AMICI-dev/AMICI/pull/2611 + + +**Full Changelog**: https://github.com/AMICI-dev/AMICI/compare/v0.29.0...v0.30.0 + + ### v0.29.0 (2024-11-28) **Fixes** diff --git a/version.txt b/version.txt index ae6dd4e203..c25c8e5b74 100644 --- a/version.txt +++ b/version.txt @@ -1 +1 @@ -0.29.0 +0.30.0