GHA: Install benchmark collection only where necessary

... and get rid of the URLs in pyproject.toml that aren't allowed on PyPI

.github/workflows/deploy_release.yml

@@ -36,11 +36,6 @@ jobs:
 
     - run: echo "AMICI_DIR=$(pwd)" >> $GITHUB_ENV
 
-    - name: Remove direct dependencies from setup.cfg
-      # Remove any "git+https"-based dependencies that are not supported
-      #  by PyPI and are only required for testing.
-      run: sed -i '/git+https/d' python/sdist/pyproject.toml
-
     - name: sdist
       run: scripts/buildSdist.sh
 

.github/workflows/test_python_cplusplus.yml

@@ -338,6 +338,12 @@ jobs:
         path: ${{ env.pooch-cache }}
         key: ${{ runner.os }}-py${{ matrix.python-version }}-${{ github.job }}
 
+    - name: Install PEtab benchmark collection
+      run: |
+        git clone --depth 1 https://github.com/benchmarking-initiative/Benchmark-Models-PEtab.git \
+          && export BENCHMARK_COLLECTION="$(pwd)/Benchmark-Models-PEtab/Benchmark-Models/" \
+          && source venv/bin/activate && python -m pip install -e $BENCHMARK_COLLECTION/../src/python
+
     - name: Python tests
       run: |
         scripts/run-python-tests.sh \

python/sdist/pyproject.toml

@@ -61,7 +61,6 @@ classifiers = [
 petab = ["petab>=0.4.0"]
 pysb = ["pysb>=1.13.1"]
 test = [
-    "benchmark_models_petab @ git+https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab.git@master#subdirectory=src/python",
     "h5py",
     "pytest",
     "pytest-cov",