From fb0f2a9453c5a448f3e03871a531f617dcafbe8e Mon Sep 17 00:00:00 2001 From: Daniel Weindl Date: Mon, 20 Nov 2023 14:53:21 +0100 Subject: [PATCH] doc --- documentation/python_installation.rst | 14 ++++++++++---- 1 file changed, 10 insertions(+), 4 deletions(-) diff --git a/documentation/python_installation.rst b/documentation/python_installation.rst index a0fcf0908b..3c75aa410f 100644 --- a/documentation/python_installation.rst +++ b/documentation/python_installation.rst @@ -13,7 +13,7 @@ Installation of the AMICI Python package has the following prerequisites: * CBLAS compatible BLAS library (e.g., OpenBLAS, CBLAS, Atlas, Accelerate, Intel MKL) * a C++17 compatible C++ compiler and a C compiler - (e.g., g++, clang, Intel C++ compiler, mingw) + (e.g., g++>=9.1, clang>=12, Intel C++ compiler, mingw) If these requirements are fulfilled and all relevant paths are setup properly, AMICI can be installed using: @@ -44,6 +44,9 @@ Install the AMICI dependencies via ``apt`` # optionally for HDF5 support: sudo apt install libhdf5-serial-dev + # optionally for boost support (thread-specific CPU times, extended math functions, serialization) + libboost-chrono-dev libboost-math-dev libboost-serialization-dev + Install AMICI: .. code-block:: bash @@ -88,13 +91,13 @@ Alternatively: .. code-block:: bash - sudo pacman -Si python swig openblas gcc hdf5 boost-libs + sudo pacman -Si python swig openblas gcc hdf5 boost-libs 2. Upgrade installed packages if required mininum versions are not satisfied for AMICI installation. .. code-block:: bash - sudo pacman -Su python swig openblas gcc hdf5 boost-libs + sudo pacman -Su python swig openblas gcc hdf5 boost-libs 3. Install AMICI: @@ -116,7 +119,10 @@ Install the AMICI dependencies using homebrew: brew install hdf5 # optionally for parallel simulations: - brew install libomp + brew install libomp && export OpenMP_ROOT=$(brew --prefix)/opt/libomp" + + # optionally for boost support (thread-specific CPU times, extended math functions, serialization) + brew install boost && export BOOST_ROOT=$(brew --prefix)/opt/boost Install AMICI: