From 1f41b172812e9075419bc2637afd90aa454025ec Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 12 Sep 2024 22:10:24 +0200 Subject: [PATCH 1/2] auto-update docs for EasyBuild v4.9.3 --- docs/version-specific/easyblocks.md | 5 +- docs/version-specific/easyconfig-constants.md | 2 +- docs/version-specific/easyconfig-templates.md | 27 +++-- docs/version-specific/eb-help.md | 7 +- docs/version-specific/generic-easyblocks.md | 30 ++++- .../supported-software/a/AGAT.md | 1 + .../supported-software/a/ANTLR.md | 1 + .../supported-software/a/APOST3D.md | 17 +++ .../supported-software/a/APR-util.md | 1 + .../supported-software/a/APR.md | 1 + .../supported-software/a/ASE.md | 2 + .../supported-software/a/Abseil.md | 1 + .../supported-software/a/Albumentations.md | 1 + .../supported-software/a/AlphaPulldown.md | 10 +- .../supported-software/a/AmberTools.md | 1 + .../a/Arcade-Learning-Environment.md | 1 + .../supported-software/a/Arrow.md | 1 + .../supported-software/a/Autoconf-archive.md | 1 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.../supported-software/s/smithwaterman.md | 1 + .../supported-software/s/snpEff.md | 1 + .../supported-software/s/spaCy.md | 1 + .../supported-software/s/spektral.md | 1 + .../supported-software/s/spglib-python.md | 1 + .../supported-software/s/spglib.md | 1 + .../supported-software/s/spla.md | 17 +++ .../supported-software/s/spoa.md | 1 + .../supported-software/s/submitit.md | 17 +++ .../supported-software/s/svist4get.md | 1 + .../supported-software/t/TAMkin.md | 2 + .../supported-software/t/TELEMAC-MASCARET.md | 1 + .../supported-software/t/TF-COMB.md | 1 + .../supported-software/t/TOBIAS.md | 1 + .../supported-software/t/TensorFlow.md | 1 + .../supported-software/t/Tk.md | 1 + .../supported-software/t/Tkinter.md | 1 + .../supported-software/t/Transrate.md | 5 +- .../supported-software/t/Triangle.md | 3 +- .../supported-software/t/Trycycler.md | 1 + .../supported-software/t/index.md | 2 + .../supported-software/t/tabixpp.md | 1 + .../supported-software/t/tbb.md | 1 + .../{f/Fujitsu.md => t/tdlib.md} | 8 +- .../supported-software/t/tensorboard.md | 1 + .../supported-software/t/tiktoken.md | 1 + .../supported-software/t/timm.md | 1 + .../supported-software/t/torch-em.md | 17 +++ .../supported-software/u/UCX-CUDA.md | 2 + .../supported-software/u/Umpire.md | 17 +++ .../supported-software/u/Uni-Core.md | 18 +++ .../supported-software/u/index.md | 2 + .../supported-software/u/unixODBC.md | 1 + .../supported-software/u/utf8proc.md | 1 + .../supported-software/v/VBZ-Compression.md | 1 + .../supported-software/v/VSEARCH.md | 1 + .../supported-software/v/VTK.md | 1 + .../supported-software/v/Visit.md | 17 +++ .../supported-software/v/index.md | 2 + .../supported-software/v/vcflib.md | 1 + .../supported-software/v/velocyto.md | 1 + .../supported-software/v/vigra.md | 17 +++ .../supported-software/v/virtualenv.md | 1 + .../supported-software/w/WFA2.md | 1 + .../supported-software/w/WRF.md | 1 + .../supported-software/w/Wayland.md | 1 + .../supported-software/w/index.md | 2 + .../supported-software/w/weblogo.md | 17 +++ .../supported-software/w/wget.md | 1 + .../supported-software/w/wradlib.md | 18 +++ .../supported-software/x/X11.md | 1 + .../supported-software/x/XGBoost.md | 1 + .../supported-software/x/XML-LibXML.md | 1 + .../supported-software/x/index.md | 1 + .../supported-software/x/x264.md | 1 + .../supported-software/x/x265.md | 1 + .../supported-software/x/xarray.md | 1 + .../supported-software/x/xtb-IFF.md | 17 +++ .../supported-software/x/xtb.md | 1 + .../supported-software/x/xtensor.md | 1 + .../supported-software/y/YACS.md | 1 + .../supported-software/y/Yasm.md | 1 + .../supported-software/y/index.md | 3 + .../supported-software/y/yell.md | 17 +++ .../supported-software/y/yelp-tools.md | 17 +++ .../supported-software/y/yelp-xsl.md | 17 +++ .../supported-software/z/Z3.md | 1 + .../supported-software/z/ZeroMQ.md | 1 + .../supported-software/z/Zoltan.md | 17 +++ .../supported-software/z/index.md | 2 + .../supported-software/z/z5py.md | 17 +++ .../supported-software/z/zlib.md | 2 +- docs/version-specific/toolchain-opts.md | 66 ++++++++-- docs/version-specific/toolchains.md | 1 + 572 files changed, 2612 insertions(+), 90 deletions(-) create mode 100644 docs/version-specific/supported-software/a/APOST3D.md create mode 100644 docs/version-specific/supported-software/a/absl-py.md create mode 100644 docs/version-specific/supported-software/a/accelerate.md create mode 100644 docs/version-specific/supported-software/a/affogato.md create mode 100644 docs/version-specific/supported-software/b/BGEN-enkre.md create mode 100644 docs/version-specific/supported-software/b/BayesOpt.md create mode 100644 docs/version-specific/supported-software/b/bayesian-optimization.md create mode 100644 docs/version-specific/supported-software/b/bitsandbytes.md create mode 100644 docs/version-specific/supported-software/b/bliss.md create mode 100644 docs/version-specific/supported-software/c/CLANS.md create mode 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100644 docs/version-specific/supported-software/m/MAGIC.md create mode 100644 docs/version-specific/supported-software/m/MATES.md create mode 100644 docs/version-specific/supported-software/m/MBX.md rename docs/version-specific/supported-software/{f/ffmpi.md => m/MeshLab.md} (83%) create mode 100644 docs/version-specific/supported-software/m/mallard-ducktype.md create mode 100644 docs/version-specific/supported-software/m/mcqd.md create mode 100644 docs/version-specific/supported-software/m/meteogrid.md create mode 100644 docs/version-specific/supported-software/m/micro-sam.md create mode 100644 docs/version-specific/supported-software/m/miniprot.md create mode 100644 docs/version-specific/supported-software/n/NECAT.md create mode 100644 docs/version-specific/supported-software/n/NextPolish.md create mode 100644 docs/version-specific/supported-software/n/napari-denoiseg.md create mode 100644 docs/version-specific/supported-software/n/nellie.md create mode 100644 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docs/version-specific/supported-software/w/wradlib.md create mode 100644 docs/version-specific/supported-software/x/xtb-IFF.md create mode 100644 docs/version-specific/supported-software/y/yell.md create mode 100644 docs/version-specific/supported-software/y/yelp-tools.md create mode 100644 docs/version-specific/supported-software/y/yelp-xsl.md create mode 100644 docs/version-specific/supported-software/z/Zoltan.md create mode 100644 docs/version-specific/supported-software/z/z5py.md diff --git a/docs/version-specific/easyblocks.md b/docs/version-specific/easyblocks.md index cc341ef65..00b6b774f 100644 --- a/docs/version-specific/easyblocks.md +++ b/docs/version-specific/easyblocks.md @@ -172,7 +172,7 @@ - EB_Tkinter - EB_QScintilla - EB_Qt - - EB_QuantumESPRESSO + - EB_QuantumESPRESSOconfig - EB_R - EB_Ruby - EB_Rust @@ -232,6 +232,7 @@ - EB_OpenIFS - EB_PALM - EB_ParMETIS + - EB_QuantumESPRESSO - EB_Rosetta - EB_SAS - EB_SCOTCH @@ -250,6 +251,7 @@ - CargoPythonPackage - EB_Scipion - JuliaPackage + - JuliaBundle - OCamlPackage - OctavePackage - PerlModule @@ -369,6 +371,7 @@ - CargoPythonPackage - EB_Scipion - JuliaPackage + - JuliaBundle - OCamlPackage - OctavePackage - PerlModule diff --git a/docs/version-specific/easyconfig-constants.md b/docs/version-specific/easyconfig-constants.md index 961efad38..493467c14 100644 --- a/docs/version-specific/easyconfig-constants.md +++ b/docs/version-specific/easyconfig-constants.md @@ -14,6 +14,6 @@ Constant name |Constant value ``OS_TYPE`` |``Darwin`` |System type (e.g. 'Linux' or 'Darwin') ``OS_VERSION`` |``UNKNOWN`` |System version ``SYSTEM`` |``{'name': 'system', 'version': 'system'}`` |System toolchain -``SYS_PYTHON_VERSION``|``3.12.3`` |System Python version (platform.python_version()) +``SYS_PYTHON_VERSION``|``3.11.9`` |System Python version (platform.python_version()) *(see also* ``eb --avail-easyconfig-constants`` *)* diff --git a/docs/version-specific/easyconfig-templates.md b/docs/version-specific/easyconfig-templates.md index 9c57296e7..e007db8e2 100644 --- a/docs/version-specific/easyconfig-templates.md +++ b/docs/version-specific/easyconfig-templates.md @@ -62,17 +62,19 @@ Template name |Template value ## Template values which are defined dynamically -Template name |Template value ----------------------------------|-------------------------------------------------------------------------------------------------------------------------------------------------------------------------- -``%(arch)s`` |System architecture (e.g. x86_64, aarch64, ppc64le, ...) -``%(sysroot)s`` |Location root directory of system, prefix for standard paths like /usr/lib and /usr/includeas specify by the --sysroot configuration option -``%(mpi_cmd_prefix)s`` |Prefix command for running MPI programs (with default number of ranks) -``%(cuda_compute_capabilities)s``|Comma-separated list of CUDA compute capabilities, as specified via --cuda-compute-capabilities configuration option or via cuda_compute_capabilities easyconfig parameter -``%(cuda_cc_cmake)s`` |List of CUDA compute capabilities suitable for use with $CUDAARCHS in CMake 3.18+ -``%(cuda_cc_space_sep)s`` |Space-separated list of CUDA compute capabilities -``%(cuda_cc_semicolon_sep)s`` |Semicolon-separated list of CUDA compute capabilities -``%(cuda_sm_comma_sep)s`` |Comma-separated list of sm_* values that correspond with CUDA compute capabilities -``%(cuda_sm_space_sep)s`` |Space-separated list of sm_* values that correspond with CUDA compute capabilities +Template name |Template value +-----------------------------------|-------------------------------------------------------------------------------------------------------------------------------------------------------------------------- +``%(arch)s`` |System architecture (e.g. x86_64, aarch64, ppc64le, ...) +``%(cuda_compute_capabilities)s`` |Comma-separated list of CUDA compute capabilities, as specified via --cuda-compute-capabilities configuration option or via cuda_compute_capabilities easyconfig parameter +``%(cuda_cc_cmake)s`` |List of CUDA compute capabilities suitable for use with $CUDAARCHS in CMake 3.18+ +``%(cuda_cc_space_sep)s`` |Space-separated list of CUDA compute capabilities +``%(cuda_cc_space_sep_no_period)s``|Space-separated list of CUDA compute capabilities, without periods (e.g. '80 90'). +``%(cuda_cc_semicolon_sep)s`` |Semicolon-separated list of CUDA compute capabilities +``%(cuda_sm_comma_sep)s`` |Comma-separated list of sm_* values that correspond with CUDA compute capabilities +``%(cuda_sm_space_sep)s`` |Space-separated list of sm_* values that correspond with CUDA compute capabilities +``%(mpi_cmd_prefix)s`` |Prefix command for running MPI programs (with default number of ranks) +``%(software_commit)s`` |Git commit id to use for the software as specified by --software-commit command line option +``%(sysroot)s`` |Location root directory of system, prefix for standard paths like /usr/lib and /usr/includeas specified by the --sysroot configuration option ## Template constants that can be used in easyconfigs @@ -88,7 +90,8 @@ Constant |Template value ``GITHUB_RELEASE`` |GitHub release URL (if github_account easyconfig parameter is not specified, namelower is used in its place) |``https://github.com/%(github_account)s/%(name)s/releases/download/v%(version)s`` ``GITHUB_LOWER_RELEASE``|GitHub release URL with lowercase name (if github_account easyconfig parameter is not specified, namelower is used in its place)|``https://github.com/%(github_account)s/%(namelower)s/releases/download/v%(version)s`` ``GNU_SAVANNAH_SOURCE`` |download.savannah.gnu.org source url |``https://download-mirror.savannah.gnu.org/releases/%(namelower)s`` -``GNU_SOURCE`` |gnu.org source url |``https://ftpmirror.gnu.org/gnu/%(namelower)s`` +``GNU_SOURCE`` |gnu.org source url (ftp mirror) |``https://ftpmirror.gnu.org/gnu/%(namelower)s`` +``GNU_FTP_SOURCE`` |gnu.org source url (main ftp) |``https://ftp.gnu.org/gnu/%(namelower)s`` ``GOOGLECODE_SOURCE`` |googlecode.com source url |``http://%(namelower)s.googlecode.com/files`` ``LAUNCHPAD_SOURCE`` |launchpad.net source url |``https://launchpad.net/%(namelower)s/%(version_major_minor)s.x/%(version)s/+download/`` ``PYPI_SOURCE`` |pypi source url |``https://pypi.python.org/packages/source/%(nameletter)s/%(name)s`` diff --git a/docs/version-specific/eb-help.md b/docs/version-specific/eb-help.md index 65a4ac992..b0a6f5d29 100644 --- a/docs/version-specific/eb-help.md +++ b/docs/version-specific/eb-help.md @@ -183,7 +183,7 @@ Option flag |Option description ``--avail-toolchain-opts=AVAIL-TOOLCHAIN-OPTS`` |Show options for toolchain (type str) ``--check-conflicts`` |Check for version conflicts in dependency graphs (default: False) ``--check-eb-deps`` |Check presence and version of (required and optional) EasyBuild dependencies (default: False) -``--dep-graph=depgraph.`` |Create dependency graph +``--dep-graph=depgraph.`` |Create dependency graph. Output format depends on , e.g. 'dot', 'png', 'pdf', 'gv'. ``--dump-env-script`` |Dump source script to set up build environment based on toolchain/dependencies (default: False) ``--easystack=EASYSTACK`` |Path to easystack file in YAML format, specifying details of a software stack ``--last-log`` |Print location to EasyBuild log file of last (failed) session (default: False) @@ -253,6 +253,7 @@ Option flag |Option ``--env-for-shebang=ENV-FOR-SHEBANG`` |Define the env command to use when fixing shebangs (default: /usr/bin/env) ``--experimental`` |Allow experimental code (with behaviour that can be changed/removed at any given time). (default: False) ``--extra-modules=EXTRA-MODULES`` |List of extra modules to load after setting up the build environment (type comma-separated list) +``--extra-source-urls=URL[|URL]`` |Specify URLs to fetch sources from in addition to those in the easyconfig (type |-separated tuple; default: https://sources.easybuild.io) ``--fetch`` |Allow downloading sources ignoring OS and modules tool dependencies, implies --stop=fetch, --ignore-osdeps and ignore modules tool (default: False) ``--filter-deps=FILTER-DEPS`` |List of dependencies that you do *not* want to install with EasyBuild, because equivalent OS packages are installed. (e.g. --filter-deps=zlib,ncurses) (type comma-separated list) ``--filter-ecs=FILTER-ECS`` |List of easyconfigs (given as glob patterns) to *ignore* when given on command line or auto-selected when building with --from-pr. (e.g. --filter-ecs=*intel*) (type comma-separated list) @@ -266,7 +267,7 @@ Option flag |Option ``--hidden`` |Install 'hidden' module file(s) by prefixing their version with '.' (default: False) ``--hide-deps=HIDE-DEPS`` |Comma separated list of dependencies that you want automatically hidden, (e.g. --hide-deps=zlib,ncurses) (type comma-separated list) ``--hide-toolchains=HIDE-TOOLCHAINS`` |Comma separated list of toolchains that you want automatically hidden, (e.g. --hide-toolchains=GCCcore) (type comma-separated list) -``--http-header-fields-urlpat=[URLPAT::][HEADER:]FILE|FIELD`` |Set extra HTTP header FIELDs when downloading files from URL PATterns. To not log sensitive values, specify a file containing newline separated FIELDs. e.g. "^https://www.example.com::/path/to/headers.txt" or "client[A-z0-9]*.example.com': ['Authorization: Basic token']". +``--http-header-fields-urlpat=[URLPAT::][HEADER:]FIELDVALUE|FILE`` |Set extra HTTP header FIELD when downloading files from URL PATterns. Use FILE (to hide sensitive values) and newline separated FIELDs in the same format. e.g. "^https://www.example.com::path/to/headers.txt" or "client[A-z0-9]*.example.com:: Authorization: Basic token". ``--ignore-checksums`` |Ignore failing checksum verification (default: False) ``--ignore-osdeps`` |Ignore any listed OS dependencies (default: False) ``--ignore-test-failure`` |Ignore a failing test step (default: False) @@ -303,8 +304,10 @@ Option flag |Option ``--silence-deprecation-warnings=SILENCE-DEPRECATION-WARNINGS`` |Silence specified deprecation warnings out of (python2, Lmod6, easyconfig, toolchain) (type comma-separated list) ``--silence-hook-trigger`` |Suppress printing of debug message every time a hook is triggered (default: False) ``--skip-extensions`` |Skip installation of extensions (default: False) +``--skip-sanity-check`` |Skip running the sanity check step (e.g. testing for installed files or running basic commands) (default: False) ``-t, --skip-test-cases`` |Skip running test cases (default: False) ``--skip-test-step`` |Skip running the test step (e.g. unit tests) (default: False) +``--software-commit=SOFTWARE-COMMIT`` |Git commit to use for the target software build (robot capabilities are automatically disabled) ``--sticky-bit`` |Set sticky bit on newly created directories (default: False) ``--sysroot=SYSROOT`` |Location root directory of system, prefix for standard paths like /usr/lib and /usr/include ``-T, --trace`` |Provide more information in output to stdout on progress (default: False) diff --git a/docs/version-specific/generic-easyblocks.md b/docs/version-specific/generic-easyblocks.md index f8ac959de..3b1eccdf3 100644 --- a/docs/version-specific/generic-easyblocks.md +++ b/docs/version-specific/generic-easyblocks.md @@ -857,7 +857,7 @@ easyconfig parameter|description ## ``JuliaBundle`` -(derives from [``Bundle``](#bundle)) +(derives from [``Bundle``](#bundle), [``JuliaPackage``](#juliapackage)) Bundle of JuliaPackages: install Julia packages as extensions in a bundle @@ -878,12 +878,36 @@ easyconfig parameter |description ``sanity_check_all_components``|Enable sanity checks for all components |``False`` ``sanity_check_components`` |List of components for which to run sanity checks |``[]`` +### Customised steps in ``JuliaBundle`` easyblock + +* ``install_step`` - Prepare installation environment and dd all dependencies to project environment. + + ## ``JuliaPackage`` (derives from ``ExtensionEasyBlock``) + Builds and installs Julia Packages. +Julia environement setup during installation: +- initialize new Julia environment in 'environments' subdir in installation directory +- remove paths in user depot '~/.julia' from DEPOT_PATH and LOAD_PATH +- put installation directory as top DEPOT_PATH, the target depot for installations with Pkg +- put installation environment as top LOAD_PATH, needed to precompile installed packages +- add Julia packages found in dependencies of the easyconfig to installation environment, needed +for Pkg to be aware of those packages and not install them again +- add newly installed Julia packages to installation environment (automatically done by Pkg) + +Julia environment setup on module load: +User depot and its shared environment for this version of Julia are kept as top paths of DEPOT_PATH and +LOAD_PATH respectively. This ensures that the user can keep using its own environment after loading +JuliaPackage modules, installing additional software on its personal depot while still using packages +provided by the module. Effectively, this translates to: +- append installation directory to list of DEPOT_PATH, only really needed to load artifacts (JLL packages) +- append installation Project.toml file to list of LOAD_PATH, needed to load packages with `using` command + + ### Extra easyconfig parameters specific to ``JuliaPackage`` easyblock easyconfig parameter |description |default value @@ -897,7 +921,7 @@ easyconfig parameter |description * ``configure_step`` - No separate configuration for JuliaPackage. -* ``install_step`` - Install Julia package with Pkg +* ``install_step`` - Prepare installation environment and install Julia package. ## ``MakeCp`` @@ -1249,8 +1273,6 @@ easyconfig parameter|description |default value ### Customised steps in ``RubyGem`` easyblock -* ``build_step`` - No separate build procedure for Ruby Gems. - * ``configure_step`` - No separate configuration for Ruby Gems. * ``install_step`` - Install Ruby Gems using gem package manager diff --git a/docs/version-specific/supported-software/a/AGAT.md b/docs/version-specific/supported-software/a/AGAT.md index a494e1583..eff3655f6 100644 --- a/docs/version-specific/supported-software/a/AGAT.md +++ b/docs/version-specific/supported-software/a/AGAT.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``0.9.2`` | ``GCC/11.2.0`` ``1.1.0`` | ``GCC/12.2.0`` +``1.4.0`` | ``GCC/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/ANTLR.md b/docs/version-specific/supported-software/a/ANTLR.md index b1a7ef77b..75b24f1ef 100644 --- a/docs/version-specific/supported-software/a/ANTLR.md +++ b/docs/version-specific/supported-software/a/ANTLR.md @@ -14,6 +14,7 @@ version | versionsuffix | toolchain ``2.7.7`` | ``-Java-11`` | ``GCCcore/10.3.0`` ``2.7.7`` | ``-Java-11`` | ``GCCcore/11.2.0`` ``2.7.7`` | ``-Java-11`` | ``GCCcore/11.3.0`` +``2.7.7`` | ``-Java-11`` | ``GCCcore/12.3.0`` ``2.7.7`` | | ``GCCcore/7.3.0`` ``2.7.7`` | | ``GCCcore/8.2.0`` ``2.7.7`` | ``-Java-11`` | ``GCCcore/8.3.0`` diff --git a/docs/version-specific/supported-software/a/APOST3D.md b/docs/version-specific/supported-software/a/APOST3D.md new file mode 100644 index 000000000..6bc0aeb23 --- /dev/null +++ b/docs/version-specific/supported-software/a/APOST3D.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# APOST3D + +Open-source APOST-3D software features a large number of wavefunction analysis tools developed over the past 20 years, aiming at connecting classical chemical concepts with the electronic structure of molecules. APOST-3D relies on the identification of the atom in the molecule (AIM), and several analysis tools are implemented in the most general way so that they can be used in combination with any chosen AIM. A Fortran-based code developed at the Universitat de Girona (UdG) by P. Salvador and collaborators. + +*homepage*: + +version | toolchain +--------|---------- +``20240527`` | ``intel-compilers/2023.1.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/a/APR-util.md b/docs/version-specific/supported-software/a/APR-util.md index 6bf0b9a5b..49c9e8d52 100644 --- a/docs/version-specific/supported-software/a/APR-util.md +++ b/docs/version-specific/supported-software/a/APR-util.md @@ -20,6 +20,7 @@ version | toolchain ``1.6.1`` | ``GCCcore/9.3.0`` ``1.6.1`` | ``iomkl/2018a`` ``1.6.3`` | ``GCCcore/12.3.0`` +``1.6.3`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/APR.md b/docs/version-specific/supported-software/a/APR.md index c7b1b3898..6dde76b65 100644 --- a/docs/version-specific/supported-software/a/APR.md +++ b/docs/version-specific/supported-software/a/APR.md @@ -20,6 +20,7 @@ version | toolchain ``1.7.0`` | ``GCCcore/8.2.0`` ``1.7.0`` | ``GCCcore/9.3.0`` ``1.7.4`` | ``GCCcore/12.3.0`` +``1.7.4`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/ASE.md b/docs/version-specific/supported-software/a/ASE.md index 2c31b91c2..50acb4445 100644 --- a/docs/version-specific/supported-software/a/ASE.md +++ b/docs/version-specific/supported-software/a/ASE.md @@ -63,6 +63,8 @@ version | versionsuffix | toolchain ``3.22.1`` | | ``iimkl/2023a`` ``3.22.1`` | | ``intel/2021b`` ``3.22.1`` | | ``intel/2022a`` +``3.23.0`` | | ``gfbf/2023a`` +``3.23.0`` | | ``iimkl/2023a`` ``3.9.1.4567`` | ``-Python-2.7.11`` | ``intel/2016a`` diff --git a/docs/version-specific/supported-software/a/Abseil.md b/docs/version-specific/supported-software/a/Abseil.md index 6e52a1f22..fe60701e2 100644 --- a/docs/version-specific/supported-software/a/Abseil.md +++ b/docs/version-specific/supported-software/a/Abseil.md @@ -15,6 +15,7 @@ version | toolchain ``20230125.2`` | ``GCCcore/12.2.0`` ``20230125.3`` | ``GCCcore/12.3.0`` ``20240116.1`` | ``GCCcore/13.2.0`` +``20240722.0`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/Albumentations.md b/docs/version-specific/supported-software/a/Albumentations.md index f2f08e208..cb8cf62f9 100644 --- a/docs/version-specific/supported-software/a/Albumentations.md +++ b/docs/version-specific/supported-software/a/Albumentations.md @@ -14,6 +14,7 @@ version | versionsuffix | toolchain ``1.1.0`` | | ``foss/2021b`` ``1.3.0`` | ``-CUDA-11.7.0`` | ``foss/2022a`` ``1.3.0`` | | ``foss/2022a`` +``1.4.0`` | | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/AlphaPulldown.md b/docs/version-specific/supported-software/a/AlphaPulldown.md index 002de2df0..cf7ed04fe 100644 --- a/docs/version-specific/supported-software/a/AlphaPulldown.md +++ b/docs/version-specific/supported-software/a/AlphaPulldown.md @@ -8,10 +8,12 @@ AlphaPulldown is a Python package that streamlines protein-protein interaction s *homepage*: -version | toolchain ---------|---------- -``0.30.4`` | ``foss/2020b`` -``0.30.4`` | ``fosscuda/2020b`` +version | versionsuffix | toolchain +--------|---------------|---------- +``0.30.4`` | | ``foss/2020b`` +``0.30.4`` | | ``fosscuda/2020b`` +``2.0.0b4`` | ``-CUDA-11.7.0`` | ``foss/2022a`` +``2.0.0b4`` | | ``foss/2022a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/AmberTools.md b/docs/version-specific/supported-software/a/AmberTools.md index c44e5deca..8efaf6487 100644 --- a/docs/version-specific/supported-software/a/AmberTools.md +++ b/docs/version-specific/supported-software/a/AmberTools.md @@ -18,6 +18,7 @@ version | versionsuffix | toolchain ``21`` | | ``intel/2021b`` ``21.12`` | | ``foss/2021b`` ``22.3`` | | ``foss/2021b`` +``23.6`` | | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/Arcade-Learning-Environment.md b/docs/version-specific/supported-software/a/Arcade-Learning-Environment.md index 6e9c79da1..60de9979e 100644 --- a/docs/version-specific/supported-software/a/Arcade-Learning-Environment.md +++ b/docs/version-specific/supported-software/a/Arcade-Learning-Environment.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``0.7.3`` | ``foss/2021b`` ``0.8.1`` | ``foss/2022a`` +``0.8.1`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/Arrow.md b/docs/version-specific/supported-software/a/Arrow.md index cf7d79faa..e1658c421 100644 --- a/docs/version-specific/supported-software/a/Arrow.md +++ b/docs/version-specific/supported-software/a/Arrow.md @@ -23,6 +23,7 @@ version | versionsuffix | toolchain ``0.7.1`` | ``-Python-3.6.3`` | ``intel/2017b`` ``11.0.0`` | | ``gfbf/2022b`` ``14.0.1`` | | ``gfbf/2023a`` +``16.1.0`` | | ``gfbf/2023b`` ``6.0.0`` | | ``foss/2021a`` ``6.0.0`` | | ``foss/2021b`` ``6.0.1`` | | ``foss/2021a`` diff --git a/docs/version-specific/supported-software/a/Autoconf-archive.md b/docs/version-specific/supported-software/a/Autoconf-archive.md index 5f7acd2ef..35b75993b 100644 --- a/docs/version-specific/supported-software/a/Autoconf-archive.md +++ b/docs/version-specific/supported-software/a/Autoconf-archive.md @@ -13,6 +13,7 @@ version | toolchain ``2019.01.06`` | ``GCC/8.2.0-2.31.1`` ``2021.02.19`` | ``GCCcore/10.2.0`` ``2023.02.20`` | ``GCCcore/11.3.0`` +``2023.02.20`` | ``GCCcore/12.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/Autoconf.md b/docs/version-specific/supported-software/a/Autoconf.md index 79e6a3b9b..5298f2b3d 100644 --- a/docs/version-specific/supported-software/a/Autoconf.md +++ b/docs/version-specific/supported-software/a/Autoconf.md @@ -46,7 +46,6 @@ version | toolchain ``2.69`` | ``iomkl/2016.07`` ``2.69`` | ``iomkl/2016.09-GCC-4.9.3-2.25`` ``2.69`` | ``system`` -``2.71`` | ``FCC/4.5.0`` ``2.71`` | ``GCCcore/10.3.0`` ``2.71`` | ``GCCcore/11.2.0`` ``2.71`` | ``GCCcore/11.3.0`` diff --git a/docs/version-specific/supported-software/a/Automake.md b/docs/version-specific/supported-software/a/Automake.md index 94ce4cfa1..e14abe9b9 100644 --- a/docs/version-specific/supported-software/a/Automake.md +++ b/docs/version-specific/supported-software/a/Automake.md @@ -51,7 +51,6 @@ version | toolchain ``1.16.1`` | ``GCCcore/9.2.0`` ``1.16.1`` | ``GCCcore/9.3.0`` ``1.16.2`` | ``GCCcore/10.2.0`` -``1.16.3`` | ``FCC/4.5.0`` ``1.16.3`` | ``GCCcore/10.3.0`` ``1.16.4`` | ``GCCcore/11.2.0`` ``1.16.5`` | ``GCCcore/11.3.0`` diff --git a/docs/version-specific/supported-software/a/Autotools.md b/docs/version-specific/supported-software/a/Autotools.md index fd7a47d7f..19e8b3e50 100644 --- a/docs/version-specific/supported-software/a/Autotools.md +++ b/docs/version-specific/supported-software/a/Autotools.md @@ -46,7 +46,6 @@ version | toolchain ``20180311`` | ``GCCcore/9.2.0`` ``20180311`` | ``GCCcore/9.3.0`` ``20200321`` | ``GCCcore/10.2.0`` -``20210128`` | ``FCC/4.5.0`` ``20210128`` | ``GCCcore/10.3.0`` ``20210726`` | ``GCCcore/11.2.0`` ``20220317`` | ``GCCcore/11.3.0`` diff --git a/docs/version-specific/supported-software/a/absl-py.md b/docs/version-specific/supported-software/a/absl-py.md new file mode 100644 index 000000000..c23d6161f --- /dev/null +++ b/docs/version-specific/supported-software/a/absl-py.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# absl-py + +absl-py is a collection of Python library code for building Python applications. The code is collected from Google's own Python code base, and has been extensively tested and used in production. + +*homepage*: + +version | toolchain +--------|---------- +``2.1.0`` | ``GCCcore/12.3.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/a/accelerate.md b/docs/version-specific/supported-software/a/accelerate.md new file mode 100644 index 000000000..a1f6c13be --- /dev/null +++ b/docs/version-specific/supported-software/a/accelerate.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# accelerate + +A simple way to launch, train, and use PyTorch models on almost any device and distributed configuration, automatic mixed precision (including fp8), and easy-to-configure FSDP and DeepSpeed support. + +*homepage*: + +version | versionsuffix | toolchain +--------|---------------|---------- +``0.33.0`` | ``-CUDA-12.1.1`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/a/adjustText.md b/docs/version-specific/supported-software/a/adjustText.md index ef3ea0d86..fde59f5a9 100644 --- a/docs/version-specific/supported-software/a/adjustText.md +++ b/docs/version-specific/supported-software/a/adjustText.md @@ -12,6 +12,7 @@ version | versionsuffix | toolchain --------|---------------|---------- ``0.7.3`` | ``-Python-3.6.6`` | ``foss/2018b`` ``0.7.3`` | | ``foss/2021b`` +``0.7.3`` | | ``foss/2022b`` ``0.7.3`` | | ``foss/2023a`` ``0.7.3`` | ``-Python-3.7.2`` | ``intel/2019a`` ``1.1.1`` | | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/a/affogato.md b/docs/version-specific/supported-software/a/affogato.md new file mode 100644 index 000000000..beb7b42b7 --- /dev/null +++ b/docs/version-specific/supported-software/a/affogato.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# affogato + +Affinity based segmentation algorithms and tools. + +*homepage*: + +version | toolchain +--------|---------- +``0.3.3`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/a/alsa-lib.md b/docs/version-specific/supported-software/a/alsa-lib.md index fff60b407..7c9fd95bb 100644 --- a/docs/version-specific/supported-software/a/alsa-lib.md +++ b/docs/version-specific/supported-software/a/alsa-lib.md @@ -10,6 +10,8 @@ The Advanced Linux Sound Architecture (ALSA) provides audio and MIDI functionali version | toolchain --------|---------- +``1.2.11`` | ``GCCcore/13.2.0`` +``1.2.11`` | ``GCCcore/13.3.0`` ``1.2.4`` | ``GCCcore/9.3.0`` ``1.2.8`` | ``GCCcore/10.2.0`` ``1.2.8`` | ``GCCcore/11.2.0`` diff --git a/docs/version-specific/supported-software/a/archspec.md b/docs/version-specific/supported-software/a/archspec.md index 57afb896c..b039b2213 100644 --- a/docs/version-specific/supported-software/a/archspec.md +++ b/docs/version-specific/supported-software/a/archspec.md @@ -19,6 +19,7 @@ version | versionsuffix | toolchain ``0.2.0`` | | ``GCCcore/12.2.0`` ``0.2.1`` | | ``GCCcore/12.3.0`` ``0.2.2`` | | ``GCCcore/13.2.0`` +``0.2.4`` | | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/attr.md b/docs/version-specific/supported-software/a/attr.md index f28ab8710..d46708703 100644 --- a/docs/version-specific/supported-software/a/attr.md +++ b/docs/version-specific/supported-software/a/attr.md @@ -16,6 +16,7 @@ version | toolchain ``2.5.1`` | ``GCCcore/11.2.0`` ``2.5.1`` | ``GCCcore/11.3.0`` ``2.5.1`` | ``GCCcore/12.3.0`` +``2.5.2`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/index.md b/docs/version-specific/supported-software/a/index.md index d324eac13..06788a33e 100644 --- a/docs/version-specific/supported-software/a/index.md +++ b/docs/version-specific/supported-software/a/index.md @@ -13,8 +13,10 @@ search: * [ABRA2](ABRA2.md) * [ABRicate](ABRicate.md) * [Abseil](Abseil.md) + * [absl-py](absl-py.md) * [abTEM](abTEM.md) * [ABySS](ABySS.md) + * [accelerate](accelerate.md) * [ack](ack.md) * [ACTC](ACTC.md) * [ada](ada.md) @@ -28,6 +30,7 @@ search: * [Advisor](Advisor.md) * [AEDT](AEDT.md) * [affinity](affinity.md) + * [affogato](affogato.md) * [AFNI](AFNI.md) * [AGAT](AGAT.md) * [AGeNT](AGeNT.md) @@ -100,6 +103,7 @@ search: * [AOMP](AOMP.md) * [APBS](APBS.md) * [apex](apex.md) + * [APOST3D](APOST3D.md) * [APR](APR.md) * [APR-util](APR-util.md) * [AptaSUITE](AptaSUITE.md) diff --git a/docs/version-specific/supported-software/b/BGEN-enkre.md b/docs/version-specific/supported-software/b/BGEN-enkre.md new file mode 100644 index 000000000..004328479 --- /dev/null +++ b/docs/version-specific/supported-software/b/BGEN-enkre.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# BGEN-enkre + +This repository contains a reference implementation of the BGEN format, written in C++. The library can be used as the basis for BGEN support in other software, or as a reference for developers writing their own implementations of the BGEN format. Please cite: Band, G. and Marchini, J., "BGEN: a binary file format for imputed genotype and haplotype data", bioArxiv 308296; doi: https://doi.org/10.1101/308296 + +*homepage*: + +version | toolchain +--------|---------- +``1.1.7`` | ``GCC/11.2.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/b/BRiAl.md b/docs/version-specific/supported-software/b/BRiAl.md index 5556e8d8e..1a089edd9 100644 --- a/docs/version-specific/supported-software/b/BRiAl.md +++ b/docs/version-specific/supported-software/b/BRiAl.md @@ -11,6 +11,7 @@ BRiAl is the legacy version of PolyBoRi maintained by sagemath developers. version | toolchain --------|---------- ``1.2.12`` | ``GCC/11.3.0`` +``1.2.12`` | ``GCC/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/Bandage.md b/docs/version-specific/supported-software/b/Bandage.md index d97104c53..6819975f0 100644 --- a/docs/version-specific/supported-software/b/Bandage.md +++ b/docs/version-specific/supported-software/b/Bandage.md @@ -14,6 +14,7 @@ version | versionsuffix | toolchain ``0.8.1`` | ``_Ubuntu`` | ``system`` ``0.9.0`` | | ``GCCcore/11.2.0`` ``0.9.0`` | | ``GCCcore/11.3.0`` +``0.9.0`` | | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/BayesOpt.md b/docs/version-specific/supported-software/b/BayesOpt.md new file mode 100644 index 000000000..cf6d27cd2 --- /dev/null +++ b/docs/version-specific/supported-software/b/BayesOpt.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# BayesOpt + +BayesOpt is an efficient implementation of the Bayesian optimization methodology for nonlinear-optimization, experimental design, stochastic bandits and hyperparameter tunning + +*homepage*: + +version | toolchain +--------|---------- +``0.9`` | ``GCC/12.3.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/b/BayesTraits.md b/docs/version-specific/supported-software/b/BayesTraits.md index 9361ec10e..1fce2adc4 100644 --- a/docs/version-specific/supported-software/b/BayesTraits.md +++ b/docs/version-specific/supported-software/b/BayesTraits.md @@ -13,6 +13,7 @@ version | versionsuffix | toolchain ``1.0-linux32`` | | ``system`` ``2.0`` | ``-Beta-Linux64`` | ``system`` ``3.0.2`` | ``-Linux`` | ``system`` +``4.1.2`` | ``-Linux`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/BeautifulSoup.md b/docs/version-specific/supported-software/b/BeautifulSoup.md index 42d7dee09..e14fe7f2b 100644 --- a/docs/version-specific/supported-software/b/BeautifulSoup.md +++ b/docs/version-specific/supported-software/b/BeautifulSoup.md @@ -16,6 +16,7 @@ version | versionsuffix | toolchain ``4.11.1`` | | ``GCCcore/12.2.0`` ``4.12.2`` | | ``GCCcore/12.3.0`` ``4.12.2`` | | ``GCCcore/13.2.0`` +``4.12.3`` | | ``GCCcore/13.3.0`` ``4.6.0`` | ``-Python-3.6.3`` | ``intel/2017b`` ``4.6.3`` | ``-Python-3.6.4`` | ``intel/2018a`` ``4.7.1`` | ``-Python-3.6.6`` | ``intel/2018b`` diff --git a/docs/version-specific/supported-software/b/BioPerl.md b/docs/version-specific/supported-software/b/BioPerl.md index e426e3941..36deb48e6 100644 --- a/docs/version-specific/supported-software/b/BioPerl.md +++ b/docs/version-specific/supported-software/b/BioPerl.md @@ -29,6 +29,7 @@ version | versionsuffix | toolchain ``1.7.8`` | | ``GCCcore/11.3.0`` ``1.7.8`` | | ``GCCcore/12.2.0`` ``1.7.8`` | | ``GCCcore/12.3.0`` +``1.7.8`` | | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/Biopython.md b/docs/version-specific/supported-software/b/Biopython.md index 4fdeba25a..2c928136f 100644 --- a/docs/version-specific/supported-software/b/Biopython.md +++ b/docs/version-specific/supported-software/b/Biopython.md @@ -49,6 +49,7 @@ version | versionsuffix | toolchain ``1.79`` | | ``intel/2021b`` ``1.81`` | | ``foss/2022b`` ``1.83`` | | ``foss/2023a`` +``1.84`` | | ``foss/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/Bison.md b/docs/version-specific/supported-software/b/Bison.md index daf680353..805ec1720 100644 --- a/docs/version-specific/supported-software/b/Bison.md +++ b/docs/version-specific/supported-software/b/Bison.md @@ -72,7 +72,6 @@ version | toolchain ``3.6.1`` | ``GCCcore/10.1.0`` ``3.7.1`` | ``GCCcore/10.2.0`` ``3.7.1`` | ``system`` -``3.7.6`` | ``FCC/4.5.0`` ``3.7.6`` | ``GCCcore/10.3.0`` ``3.7.6`` | ``GCCcore/11.1.0`` ``3.7.6`` | ``GCCcore/11.2.0`` @@ -87,6 +86,7 @@ version | toolchain ``3.8.2`` | ``GCCcore/13.2.0`` ``3.8.2`` | ``GCCcore/13.3.0`` ``3.8.2`` | ``GCCcore/14.1.0`` +``3.8.2`` | ``GCCcore/14.2.0`` ``3.8.2`` | ``GCCcore/9.5.0`` ``3.8.2`` | ``system`` diff --git a/docs/version-specific/supported-software/b/Boost.MPI.md b/docs/version-specific/supported-software/b/Boost.MPI.md index 87dfffe2d..6d94386ac 100644 --- a/docs/version-specific/supported-software/b/Boost.MPI.md +++ b/docs/version-specific/supported-software/b/Boost.MPI.md @@ -16,6 +16,7 @@ version | toolchain ``1.79.0`` | ``gompi/2022b`` ``1.81.0`` | ``gompi/2022b`` ``1.82.0`` | ``gompi/2023a`` +``1.83.0`` | ``gompi/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/Boost.Python.md b/docs/version-specific/supported-software/b/Boost.Python.md index 7c3a74d3f..cd57bd67f 100644 --- a/docs/version-specific/supported-software/b/Boost.Python.md +++ b/docs/version-specific/supported-software/b/Boost.Python.md @@ -37,6 +37,7 @@ version | versionsuffix | toolchain ``1.76.0`` | | ``GCC/10.3.0`` ``1.77.0`` | | ``GCC/11.2.0`` ``1.79.0`` | | ``GCC/11.3.0`` +``1.82.0`` | | ``GCC/12.3.0`` ``1.83.0`` | | ``GCC/13.2.0`` diff --git a/docs/version-specific/supported-software/b/Boost.md b/docs/version-specific/supported-software/b/Boost.md index d7093033f..dc74102d4 100644 --- a/docs/version-specific/supported-software/b/Boost.md +++ b/docs/version-specific/supported-software/b/Boost.md @@ -11,6 +11,7 @@ Boost provides free peer-reviewed portable C++ source libraries. version | versionsuffix | toolchain --------|---------------|---------- ``1.54.0`` | ``-Python-2.7.12`` | ``foss/2016b`` +``1.55.0`` | | ``GCC/11.2.0`` ``1.55.0`` | ``-Python-2.7.11`` | ``foss/2016a`` ``1.55.0`` | | ``system`` ``1.57.0`` | ``-Python-2.7.10`` | ``gimkl/2.11.5`` diff --git a/docs/version-specific/supported-software/b/Bowtie.md b/docs/version-specific/supported-software/b/Bowtie.md index 8621ec7b0..3300aa340 100644 --- a/docs/version-specific/supported-software/b/Bowtie.md +++ b/docs/version-specific/supported-software/b/Bowtie.md @@ -32,6 +32,8 @@ version | toolchain ``1.3.1`` | ``GCC/10.3.0`` ``1.3.1`` | ``GCC/11.2.0`` ``1.3.1`` | ``GCC/11.3.0`` +``1.3.1`` | ``GCC/12.2.0`` +``1.3.1`` | ``GCC/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/Brunsli.md b/docs/version-specific/supported-software/b/Brunsli.md index 741eae19f..327abaf62 100644 --- a/docs/version-specific/supported-software/b/Brunsli.md +++ b/docs/version-specific/supported-software/b/Brunsli.md @@ -15,6 +15,8 @@ version | toolchain ``0.1`` | ``GCCcore/11.3.0`` ``0.1`` | ``GCCcore/12.2.0`` ``0.1`` | ``GCCcore/12.3.0`` +``0.1`` | ``GCCcore/13.2.0`` +``0.1`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/bayesian-optimization.md b/docs/version-specific/supported-software/b/bayesian-optimization.md new file mode 100644 index 000000000..58b07fc06 --- /dev/null +++ b/docs/version-specific/supported-software/b/bayesian-optimization.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# bayesian-optimization + +Pure Python implementation of bayesian global optimization with gaussian processes. + +*homepage*: + +version | toolchain +--------|---------- +``1.5.1`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/b/bcl-convert.md b/docs/version-specific/supported-software/b/bcl-convert.md index 442ff10ad..30d093ad1 100644 --- a/docs/version-specific/supported-software/b/bcl-convert.md +++ b/docs/version-specific/supported-software/b/bcl-convert.md @@ -11,6 +11,7 @@ The Illumina BCL Convert v4.0 is a standalone local software app that converts t version | versionsuffix | toolchain --------|---------------|---------- ``4.0.3-2`` | ``el7.x86_64`` | ``system`` +``4.2.7-2`` | ``el7.x86_64`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/beagle-lib.md b/docs/version-specific/supported-software/b/beagle-lib.md index 25227ffbc..eb21e3fdb 100644 --- a/docs/version-specific/supported-software/b/beagle-lib.md +++ b/docs/version-specific/supported-software/b/beagle-lib.md @@ -23,6 +23,7 @@ version | versionsuffix | toolchain ``3.1.2`` | | ``gcccuda/2019b`` ``3.1.2`` | | ``iccifort/2019.1.144-GCC-8.2.0-2.31.1`` ``4.0.0`` | | ``GCC/11.3.0`` +``4.0.1`` | ``-CUDA-12.1.1`` | ``GCC/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/binutils.md b/docs/version-specific/supported-software/b/binutils.md index fe1c98eb4..cde65a8c5 100644 --- a/docs/version-specific/supported-software/b/binutils.md +++ b/docs/version-specific/supported-software/b/binutils.md @@ -51,7 +51,6 @@ version | toolchain ``2.34`` | ``system`` ``2.35`` | ``GCCcore/10.2.0`` ``2.35`` | ``system`` -``2.36.1`` | ``FCC/4.5.0`` ``2.36.1`` | ``GCCcore/10.3.0`` ``2.36.1`` | ``GCCcore/11.1.0`` ``2.36.1`` | ``GCCcore/8.4.0`` @@ -72,6 +71,7 @@ version | toolchain ``2.40`` | ``system`` ``2.42`` | ``GCCcore/13.3.0`` ``2.42`` | ``GCCcore/14.1.0`` +``2.42`` | ``GCCcore/14.2.0`` ``2.42`` | ``system`` diff --git a/docs/version-specific/supported-software/b/biom-format.md b/docs/version-specific/supported-software/b/biom-format.md index 43242b1b2..f5875d1d9 100644 --- a/docs/version-specific/supported-software/b/biom-format.md +++ b/docs/version-specific/supported-software/b/biom-format.md @@ -15,6 +15,7 @@ version | versionsuffix | toolchain ``2.1.14`` | | ``foss/2022a`` ``2.1.15`` | | ``foss/2022b`` ``2.1.15`` | | ``foss/2023a`` +``2.1.16`` | | ``foss/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/bitsandbytes.md b/docs/version-specific/supported-software/b/bitsandbytes.md new file mode 100644 index 000000000..939c2215d --- /dev/null +++ b/docs/version-specific/supported-software/b/bitsandbytes.md @@ -0,0 +1,18 @@ +--- +search: + boost: 0.5 +--- +# bitsandbytes + +bitsandbytes enables accessible large language models via k-bit quantization for PyTorch. + +*homepage*: + +version | versionsuffix | toolchain +--------|---------------|---------- +``0.43.3`` | ``-CUDA-12.1.1`` | ``foss/2023a`` +``0.43.3`` | | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/b/bliss.md b/docs/version-specific/supported-software/b/bliss.md new file mode 100644 index 000000000..446f178a1 --- /dev/null +++ b/docs/version-specific/supported-software/b/bliss.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# bliss + +Bliss is an open-source tool for computing canonical labelings and automorphism groups of graphs. + +*homepage*: + +version | toolchain +--------|---------- +``0.77`` | ``GCC/13.2.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/b/buildenv.md b/docs/version-specific/supported-software/b/buildenv.md index c898545bd..908b507c1 100644 --- a/docs/version-specific/supported-software/b/buildenv.md +++ b/docs/version-specific/supported-software/b/buildenv.md @@ -10,8 +10,6 @@ This module sets a group of environment variables for compilers, linkers, maths version | versionsuffix | toolchain --------|---------------|---------- -``default`` | | ``FCC/4.5.0`` -``default`` | | ``Fujitsu/21.05`` ``default`` | | ``foss/2017b`` ``default`` | | ``foss/2018b`` ``default`` | | ``foss/2019b`` diff --git a/docs/version-specific/supported-software/b/byacc.md b/docs/version-specific/supported-software/b/byacc.md index 5891a6a73..689bd5562 100644 --- a/docs/version-specific/supported-software/b/byacc.md +++ b/docs/version-specific/supported-software/b/byacc.md @@ -10,6 +10,7 @@ Berkeley Yacc (byacc) is generally conceded to be the best yacc variant availabl version | toolchain --------|---------- +``2.0.20240109`` | ``GCCcore/13.3.0`` ``20160324`` | ``intel/2016a`` ``20160606`` | ``foss/2016b`` ``20160606`` | ``intel/2016b`` diff --git a/docs/version-specific/supported-software/b/index.md b/docs/version-specific/supported-software/b/index.md index ed88dc249..a9474aba4 100644 --- a/docs/version-specific/supported-software/b/index.md +++ b/docs/version-specific/supported-software/b/index.md @@ -35,6 +35,8 @@ search: * [BayesAss3-SNPs](BayesAss3-SNPs.md) * [BayeScan](BayeScan.md) * [BayeScEnv](BayeScEnv.md) + * [bayesian-optimization](bayesian-optimization.md) + * [BayesOpt](BayesOpt.md) * [BayesPrism](BayesPrism.md) * [BayesTraits](BayesTraits.md) * [Bazel](Bazel.md) @@ -68,6 +70,7 @@ search: * [BgeeCall](BgeeCall.md) * [BgeeDB](BgeeDB.md) * [bgen](bgen.md) + * [BGEN-enkre](BGEN-enkre.md) * [bgen-reader](bgen-reader.md) * [BiasAdjustCXX](BiasAdjustCXX.md) * [bibtexparser](bibtexparser.md) @@ -95,6 +98,7 @@ search: * [Bismark](Bismark.md) * [Bison](Bison.md) * [bitarray](bitarray.md) + * [bitsandbytes](bitsandbytes.md) * [bitshuffle](bitshuffle.md) * [BLACS](BLACS.md) * [BLASR](BLASR.md) @@ -104,6 +108,7 @@ search: * [BLAT](BLAT.md) * [Blender](Blender.md) * [BLIS](BLIS.md) + * [bliss](bliss.md) * [Blitz++](Blitz++.md) * [BlobTools](BlobTools.md) * [Block](Block.md) diff --git a/docs/version-specific/supported-software/c/CD-HIT.md b/docs/version-specific/supported-software/c/CD-HIT.md index acb41c735..6b722e59d 100644 --- a/docs/version-specific/supported-software/c/CD-HIT.md +++ b/docs/version-specific/supported-software/c/CD-HIT.md @@ -20,6 +20,7 @@ version | versionsuffix | toolchain ``4.8.1`` | | ``GCC/11.2.0`` ``4.8.1`` | | ``GCC/11.3.0`` ``4.8.1`` | | ``GCC/12.2.0`` +``4.8.1`` | | ``GCC/12.3.0`` ``4.8.1`` | | ``GCC/8.3.0`` ``4.8.1`` | | ``GCC/9.3.0`` ``4.8.1`` | | ``foss/2018b`` diff --git a/docs/version-specific/supported-software/c/CDO.md b/docs/version-specific/supported-software/c/CDO.md index 255d9dcf6..8e4ae13cd 100644 --- a/docs/version-specific/supported-software/c/CDO.md +++ b/docs/version-specific/supported-software/c/CDO.md @@ -27,6 +27,7 @@ version | toolchain ``2.1.1`` | ``gompi/2021a`` ``2.2.2`` | ``gompi/2023a`` ``2.2.2`` | ``gompi/2023b`` +``2.3.0`` | ``iimpi/2022a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/CESM-deps.md b/docs/version-specific/supported-software/c/CESM-deps.md index ca2bd1727..d72995619 100644 --- a/docs/version-specific/supported-software/c/CESM-deps.md +++ b/docs/version-specific/supported-software/c/CESM-deps.md @@ -13,6 +13,7 @@ version | toolchain ``2`` | ``foss/2018b`` ``2`` | ``foss/2021b`` ``2`` | ``foss/2022a`` +``2`` | ``foss/2023a`` ``2`` | ``intel/2018b`` ``2`` | ``iomkl/2018b`` diff --git a/docs/version-specific/supported-software/c/CFITSIO.md b/docs/version-specific/supported-software/c/CFITSIO.md index 590bddfd8..af8dd4b7e 100644 --- a/docs/version-specific/supported-software/c/CFITSIO.md +++ b/docs/version-specific/supported-software/c/CFITSIO.md @@ -29,6 +29,7 @@ version | toolchain ``4.2.0`` | ``GCCcore/12.2.0`` ``4.3.0`` | ``GCCcore/12.3.0`` ``4.3.1`` | ``GCCcore/13.2.0`` +``4.4.1`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/CGAL.md b/docs/version-specific/supported-software/c/CGAL.md index 92a8dff8f..5888dc857 100644 --- a/docs/version-specific/supported-software/c/CGAL.md +++ b/docs/version-specific/supported-software/c/CGAL.md @@ -44,6 +44,7 @@ version | versionsuffix | toolchain ``5.5.2`` | | ``GCCcore/12.2.0`` ``5.6`` | | ``GCCcore/12.3.0`` ``5.6.1`` | | ``GCCcore/13.2.0`` +``5.6.1`` | | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/CLANS.md b/docs/version-specific/supported-software/c/CLANS.md new file mode 100644 index 000000000..20be0eda7 --- /dev/null +++ b/docs/version-specific/supported-software/c/CLANS.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# CLANS + +CLANS 2.0 is a Python-based program for clustering sequences in the 2D or 3D space, based on their sequence similarities. CLANS visualizes the dynamic clustering process and enables the user to interactively control it and explore the cluster map in various ways. + +*homepage*: + +version | toolchain +--------|---------- +``2.0.8`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/c/CORSIKA.md b/docs/version-specific/supported-software/c/CORSIKA.md new file mode 100644 index 000000000..4e24b7e8a --- /dev/null +++ b/docs/version-specific/supported-software/c/CORSIKA.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# CORSIKA + +CORSIKA (COsmic Ray SImulations for KAscade) is a program for detailed simulation of extensive air showers initiated by high energy cosmic ray particles. Protons, light nuclei up to iron, photons, and many other particles may be treated as primaries. + +*homepage*: + +version | toolchain +--------|---------- +``77550`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/c/COSTA.md b/docs/version-specific/supported-software/c/COSTA.md new file mode 100644 index 000000000..f614fa85e --- /dev/null +++ b/docs/version-specific/supported-software/c/COSTA.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# COSTA + +OSTA is a communication-optimal, highly-optimised algorithm for data redistribution accross multiple processors, using MPI and OpenMP and offering the possibility to transpose and scale some or all data. + +*homepage*: + +version | toolchain +--------|---------- +``2.2.2`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/c/CSBDeep.md b/docs/version-specific/supported-software/c/CSBDeep.md index 575f39e9e..b77fdb73b 100644 --- a/docs/version-specific/supported-software/c/CSBDeep.md +++ b/docs/version-specific/supported-software/c/CSBDeep.md @@ -14,6 +14,7 @@ version | versionsuffix | toolchain ``0.4.1`` | ``-Python-3.7.2`` | ``fosscuda/2019a`` ``0.7.4`` | ``-CUDA-11.7.0`` | ``foss/2022a`` ``0.7.4`` | | ``foss/2022a`` +``0.7.4`` | | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/CUDA-Samples.md b/docs/version-specific/supported-software/c/CUDA-Samples.md index d4122844a..2bb982756 100644 --- a/docs/version-specific/supported-software/c/CUDA-Samples.md +++ b/docs/version-specific/supported-software/c/CUDA-Samples.md @@ -12,7 +12,9 @@ version | versionsuffix | toolchain --------|---------------|---------- ``11.3`` | ``-CUDA-11.3.1`` | ``GCC/10.3.0`` ``11.6`` | ``-CUDA-11.7.0`` | ``GCC/11.3.0`` +``11.8`` | ``-CUDA-11.7.0`` | ``GCC/11.3.0`` ``12.1`` | ``-CUDA-12.1.1`` | ``GCC/12.3.0`` +``12.2`` | ``-CUDA-12.2.0`` | ``GCC/11.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/CUDA.md b/docs/version-specific/supported-software/c/CUDA.md index 65db18289..60f630885 100644 --- a/docs/version-specific/supported-software/c/CUDA.md +++ b/docs/version-specific/supported-software/c/CUDA.md @@ -40,6 +40,8 @@ version | toolchain ``12.3.0`` | ``system`` ``12.3.2`` | ``system`` ``12.4.0`` | ``system`` +``12.5.0`` | ``system`` +``12.6.0`` | ``system`` ``5.5.22`` | ``GCC/4.8.2`` ``5.5.22`` | ``system`` ``6.0.37`` | ``system`` diff --git a/docs/version-specific/supported-software/c/CUDD.md b/docs/version-specific/supported-software/c/CUDD.md index 7ea48740f..b4ddee1d7 100644 --- a/docs/version-specific/supported-software/c/CUDD.md +++ b/docs/version-specific/supported-software/c/CUDD.md @@ -11,6 +11,7 @@ The CUDD package is a package written in C for the manipulation of decision dia version | toolchain --------|---------- ``3.0.0`` | ``GCC/11.3.0`` +``3.0.0`` | ``GCC/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/CUTLASS.md b/docs/version-specific/supported-software/c/CUTLASS.md index 55afd663a..bdba1ec04 100644 --- a/docs/version-specific/supported-software/c/CUTLASS.md +++ b/docs/version-specific/supported-software/c/CUTLASS.md @@ -11,6 +11,7 @@ CUTLASS is a collection of CUDA C++ template abstractions for implementing high- version | versionsuffix | toolchain --------|---------------|---------- ``2.11.0`` | ``-CUDA-11.7.0`` | ``foss/2022a`` +``3.4.0`` | ``-CUDA-12.1.1`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/Catch2.md b/docs/version-specific/supported-software/c/Catch2.md index bac6b59fd..022b3ba63 100644 --- a/docs/version-specific/supported-software/c/Catch2.md +++ b/docs/version-specific/supported-software/c/Catch2.md @@ -11,6 +11,7 @@ A modern, C++-native, header-only, test framework for unit-tests, TDD and BDD version | toolchain --------|---------- ``2.11.0`` | ``system`` +``2.13.10`` | ``GCCcore/13.3.0`` ``2.13.4`` | ``system`` ``2.13.9`` | ``GCCcore/12.2.0`` ``2.13.9`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/c/CellOracle.md b/docs/version-specific/supported-software/c/CellOracle.md index 452beff6d..f0b391aa3 100644 --- a/docs/version-specific/supported-software/c/CellOracle.md +++ b/docs/version-specific/supported-software/c/CellOracle.md @@ -11,6 +11,7 @@ CellOracle is a Python library for in silico gene perturbation analyses using si version | toolchain --------|---------- ``0.12.0`` | ``foss/2022a`` +``0.18.0`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/Clang.md b/docs/version-specific/supported-software/c/Clang.md index b39e643f2..40b368a32 100644 --- a/docs/version-specific/supported-software/c/Clang.md +++ b/docs/version-specific/supported-software/c/Clang.md @@ -28,6 +28,7 @@ version | versionsuffix | toolchain ``16.0.6`` | ``-CUDA-12.1.1`` | ``GCCcore/12.3.0`` ``16.0.6`` | | ``GCCcore/12.3.0`` ``17.0.6`` | | ``GCCcore/13.2.0`` +``18.1.8`` | | ``GCCcore/13.3.0`` ``3.3`` | | ``GCC/4.8.1`` ``3.4`` | | ``GCC/4.8.2`` ``3.4.1`` | | ``GCC/4.8.2`` diff --git a/docs/version-specific/supported-software/c/ConcurrentVersionsSystem.md b/docs/version-specific/supported-software/c/ConcurrentVersionsSystem.md index bfd283786..10ac175f9 100644 --- a/docs/version-specific/supported-software/c/ConcurrentVersionsSystem.md +++ b/docs/version-specific/supported-software/c/ConcurrentVersionsSystem.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``1.11.23`` | ``GCC/4.8.2`` ``1.11.23`` | ``GCCcore/11.2.0`` +``1.11.23`` | ``GCCcore/13.3.0`` ``1.11.23`` | ``GCCcore/4.9.3`` ``1.11.23`` | ``GCCcore/6.4.0`` diff --git a/docs/version-specific/supported-software/c/Coreutils.md b/docs/version-specific/supported-software/c/Coreutils.md index 39e9803ec..8de68209f 100644 --- a/docs/version-specific/supported-software/c/Coreutils.md +++ b/docs/version-specific/supported-software/c/Coreutils.md @@ -18,6 +18,7 @@ version | toolchain ``9.0`` | ``GCCcore/11.2.0`` ``9.1`` | ``GCCcore/11.3.0`` ``9.1`` | ``GCCcore/12.2.0`` +``9.5`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/Critic2.md b/docs/version-specific/supported-software/c/Critic2.md new file mode 100644 index 000000000..0a9c3f494 --- /dev/null +++ b/docs/version-specific/supported-software/c/Critic2.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# Critic2 + +Critic2 is a program for the analysis of quantum mechanical calculation results in molecules and periodic solids. + +*homepage*: + +version | toolchain +--------|---------- +``1.2`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/c/CubeLib.md b/docs/version-specific/supported-software/c/CubeLib.md index 2d7f17f48..1e01610d1 100644 --- a/docs/version-specific/supported-software/c/CubeLib.md +++ b/docs/version-specific/supported-software/c/CubeLib.md @@ -21,6 +21,7 @@ version | toolchain ``4.8.1`` | ``GCCcore/12.3.0`` ``4.8.2`` | ``GCCcore/12.2.0`` ``4.8.2`` | ``GCCcore/13.2.0`` +``4.8.2`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/CubeWriter.md b/docs/version-specific/supported-software/c/CubeWriter.md index 347a6097e..b036cfbc5 100644 --- a/docs/version-specific/supported-software/c/CubeWriter.md +++ b/docs/version-specific/supported-software/c/CubeWriter.md @@ -22,6 +22,7 @@ version | toolchain ``4.8.1`` | ``GCCcore/12.3.0`` ``4.8.2`` | ``GCCcore/12.2.0`` ``4.8.2`` | ``GCCcore/13.2.0`` +``4.8.2`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/Cython.md b/docs/version-specific/supported-software/c/Cython.md index 820a9cccc..344c0b173 100644 --- a/docs/version-specific/supported-software/c/Cython.md +++ b/docs/version-specific/supported-software/c/Cython.md @@ -22,6 +22,7 @@ version | versionsuffix | toolchain ``0.29.22`` | | ``GCCcore/10.2.0`` ``0.29.33`` | | ``GCCcore/11.3.0`` ``3.0.10`` | | ``GCCcore/13.2.0`` +``3.0.10`` | | ``GCCcore/13.3.0`` ``3.0.7`` | | ``GCCcore/12.3.0`` ``3.0.8`` | | ``GCCcore/11.3.0`` ``3.0.8`` | | ``GCCcore/12.2.0`` diff --git a/docs/version-specific/supported-software/c/cairo.md b/docs/version-specific/supported-software/c/cairo.md index 6d810f4ba..4bee7976b 100644 --- a/docs/version-specific/supported-software/c/cairo.md +++ b/docs/version-specific/supported-software/c/cairo.md @@ -32,6 +32,7 @@ version | versionsuffix | toolchain ``1.17.4`` | | ``GCCcore/12.2.0`` ``1.17.8`` | | ``GCCcore/12.3.0`` ``1.18.0`` | | ``GCCcore/13.2.0`` +``1.18.0`` | | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/cairomm.md b/docs/version-specific/supported-software/c/cairomm.md index 9d899f114..057567bd0 100644 --- a/docs/version-specific/supported-software/c/cairomm.md +++ b/docs/version-specific/supported-software/c/cairomm.md @@ -13,6 +13,7 @@ version | toolchain ``1.12.2`` | ``GCCcore/6.4.0`` ``1.12.2`` | ``GCCcore/7.3.0`` ``1.16.2`` | ``GCC/11.3.0`` +``1.16.2`` | ``GCC/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/cfgrib.md b/docs/version-specific/supported-software/c/cfgrib.md new file mode 100644 index 000000000..184128014 --- /dev/null +++ b/docs/version-specific/supported-software/c/cfgrib.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# cfgrib + +A Python interface to map GRIB files to the NetCDF Common Data Model following the CF Convention using ecCodes. + +*homepage*: + +version | toolchain +--------|---------- +``0.9.14.0`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/c/chewBBACA.md b/docs/version-specific/supported-software/c/chewBBACA.md index c1bee4d93..552634bab 100644 --- a/docs/version-specific/supported-software/c/chewBBACA.md +++ b/docs/version-specific/supported-software/c/chewBBACA.md @@ -11,6 +11,7 @@ chewBBACA stands for "BSR-Based Allele Calling Algorithm". chewBBACA is a compre version | versionsuffix | toolchain --------|---------------|---------- ``2.5.5`` | ``-Python-3.8.2`` | ``intel/2020a`` +``3.3.9`` | | ``foss/2022b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/code-server.md b/docs/version-specific/supported-software/c/code-server.md index 41aef0160..27b682357 100644 --- a/docs/version-specific/supported-software/c/code-server.md +++ b/docs/version-specific/supported-software/c/code-server.md @@ -16,6 +16,7 @@ version | toolchain ``4.22.1`` | ``system`` ``4.89.1`` | ``system`` ``4.9.1`` | ``system`` +``4.90.2`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/colorize.md b/docs/version-specific/supported-software/c/colorize.md new file mode 100644 index 000000000..945b4b529 --- /dev/null +++ b/docs/version-specific/supported-software/c/colorize.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# colorize + +Ruby gem for colorizing text using ANSI escape sequences. Extends String class or add a ColorizedString with methods to set the text color, background color and text effects. + +*homepage*: + +version | toolchain +--------|---------- +``0.7.7`` | ``GCC/12.3.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/c/connected-components-3d.md b/docs/version-specific/supported-software/c/connected-components-3d.md index 89db19cc3..35f407aa0 100644 --- a/docs/version-specific/supported-software/c/connected-components-3d.md +++ b/docs/version-specific/supported-software/c/connected-components-3d.md @@ -11,6 +11,7 @@ cc3d is an implementation of connected components in three dimensions using a 26 version | toolchain --------|---------- ``3.12.1`` | ``foss/2022b`` +``3.14.1`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/cooler.md b/docs/version-specific/supported-software/c/cooler.md index 9f30ab8f8..5c454eb7c 100644 --- a/docs/version-specific/supported-software/c/cooler.md +++ b/docs/version-specific/supported-software/c/cooler.md @@ -10,6 +10,7 @@ Cooler is a support library for a storage format, also called cooler, used to st version | toolchain --------|---------- +``0.10.2`` | ``foss/2023a`` ``0.9.1`` | ``foss/2022a`` diff --git a/docs/version-specific/supported-software/c/coxeter.md b/docs/version-specific/supported-software/c/coxeter.md new file mode 100644 index 000000000..76bbd4cac --- /dev/null +++ b/docs/version-specific/supported-software/c/coxeter.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# coxeter + +A library for the study of combinatorial aspects of Coxeter group theory + +*homepage*: + +version | toolchain +--------|---------- +``20180226`` | ``GCCcore/13.2.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/c/cppy.md b/docs/version-specific/supported-software/c/cppy.md index cb786a3b6..94fe54a73 100644 --- a/docs/version-specific/supported-software/c/cppy.md +++ b/docs/version-specific/supported-software/c/cppy.md @@ -16,6 +16,7 @@ version | toolchain ``1.2.1`` | ``GCCcore/12.2.0`` ``1.2.1`` | ``GCCcore/12.3.0`` ``1.2.1`` | ``GCCcore/13.2.0`` +``1.2.1`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/crb-blast.md b/docs/version-specific/supported-software/c/crb-blast.md index 270ab7da7..9f0f204e8 100644 --- a/docs/version-specific/supported-software/c/crb-blast.md +++ b/docs/version-specific/supported-software/c/crb-blast.md @@ -4,12 +4,13 @@ search: --- # crb-blast -Conditional Reciprocal Best BLAST - high confidence ortholog assignment. CRB-BLAST is a novel method for finding orthologs between one set of sequences and another. This is particularly useful in genome and transcriptome annotation. +Conditional Reciprocal Best BLAST - high confidence ortholog assignment. *homepage*: version | versionsuffix | toolchain --------|---------------|---------- +``0.6.9`` | | ``GCC/12.3.0`` ``0.6.9`` | ``-Ruby-2.6.1`` | ``foss/2018b`` ``0.6.9`` | | ``gompi/2021a`` ``0.6.9`` | | ``gompi/2021b`` diff --git a/docs/version-specific/supported-software/c/crypt4gh.md b/docs/version-specific/supported-software/c/crypt4gh.md new file mode 100644 index 000000000..61a76c688 --- /dev/null +++ b/docs/version-specific/supported-software/c/crypt4gh.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# crypt4gh + +crypt4gh is a Python tool to encrypt, decrypt or re-encrypt files, according to the GA4GH encryption file format. + +*homepage*: + +version | toolchain +--------|---------- +``1.7`` | ``GCC/12.3.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/c/cryptography.md b/docs/version-specific/supported-software/c/cryptography.md index a04e1b542..9e2b77b78 100644 --- a/docs/version-specific/supported-software/c/cryptography.md +++ b/docs/version-specific/supported-software/c/cryptography.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``41.0.1`` | ``GCCcore/12.3.0`` ``41.0.5`` | ``GCCcore/13.2.0`` +``42.0.8`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/cutadapt.md b/docs/version-specific/supported-software/c/cutadapt.md index 5b32f22de..0a55f64d7 100644 --- a/docs/version-specific/supported-software/c/cutadapt.md +++ b/docs/version-specific/supported-software/c/cutadapt.md @@ -39,6 +39,7 @@ version | versionsuffix | toolchain ``3.5`` | | ``GCCcore/11.2.0`` ``4.2`` | | ``GCCcore/11.3.0`` ``4.4`` | | ``GCCcore/12.2.0`` +``4.9`` | | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/cyvcf2.md b/docs/version-specific/supported-software/c/cyvcf2.md index c80627b4c..1657d8fd0 100644 --- a/docs/version-specific/supported-software/c/cyvcf2.md +++ b/docs/version-specific/supported-software/c/cyvcf2.md @@ -13,6 +13,7 @@ version | versionsuffix | toolchain ``0.10.10`` | ``-Python-3.6.6`` | ``foss/2018b`` ``0.11.5`` | | ``foss/2019a`` ``0.11.5`` | | ``intel/2019a`` +``0.31.1`` | | ``gfbf/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/index.md b/docs/version-specific/supported-software/c/index.md index e442d705d..e24808e37 100644 --- a/docs/version-specific/supported-software/c/index.md +++ b/docs/version-specific/supported-software/c/index.md @@ -87,6 +87,7 @@ search: * [CESM-deps](CESM-deps.md) * [CFDEMcoupling](CFDEMcoupling.md) * [cffi](cffi.md) + * [cfgrib](cfgrib.md) * [CFITSIO](CFITSIO.md) * [cftime](cftime.md) * [CGAL](CGAL.md) @@ -130,6 +131,7 @@ search: * [Clang](Clang.md) * [Clang-AOMP](Clang-AOMP.md) * [Clang-Python-bindings](Clang-Python-bindings.md) + * [CLANS](CLANS.md) * [CLAPACK](CLAPACK.md) * [Clarabel.rs](Clarabel.rs.md) * [CLEAR](CLEAR.md) @@ -168,6 +170,7 @@ search: * [Coin](Coin.md) * [CoinUtils](CoinUtils.md) * [ColabFold](ColabFold.md) + * [colorize](colorize.md) * [colossalai](colossalai.md) * [COMEBin](COMEBin.md) * [Commet](Commet.md) @@ -194,9 +197,12 @@ search: * [core-counter](core-counter.md) * [Coreutils](Coreutils.md) * [corner](corner.md) + * [CORSIKA](CORSIKA.md) + * [COSTA](COSTA.md) * [CoSymLib](CoSymLib.md) * [coverage](coverage.md) * [cowsay](cowsay.md) + * [coxeter](coxeter.md) * [CP2K](CP2K.md) * [CPB](CPB.md) * [CPC2](CPC2.md) @@ -221,6 +227,7 @@ search: * [CRF++](CRF++.md) * [CRISPR-DAV](CRISPR-DAV.md) * [CRISPResso2](CRISPResso2.md) + * [Critic2](Critic2.md) * [cromwell](cromwell.md) * [crossguid](crossguid.md) * [CrossMap](CrossMap.md) @@ -229,6 +236,7 @@ search: * [Crumble](Crumble.md) * [cryoCARE](cryoCARE.md) * [cryoDRGN](cryoDRGN.md) + * [crypt4gh](crypt4gh.md) * [cryptography](cryptography.md) * [CryptoMiniSat](CryptoMiniSat.md) * [CrystFEL](CrystFEL.md) diff --git a/docs/version-specific/supported-software/d/DB.md b/docs/version-specific/supported-software/d/DB.md index 70535d433..ba5196a5d 100644 --- a/docs/version-specific/supported-software/d/DB.md +++ b/docs/version-specific/supported-software/d/DB.md @@ -14,7 +14,6 @@ version | toolchain ``18.1.32`` | ``GCCcore/8.2.0`` ``18.1.32`` | ``GCCcore/8.3.0`` ``18.1.32`` | ``GCCcore/9.3.0`` -``18.1.40`` | ``FCC/4.5.0`` ``18.1.40`` | ``GCCcore/10.2.0`` ``18.1.40`` | ``GCCcore/10.3.0`` ``18.1.40`` | ``GCCcore/11.2.0`` @@ -22,6 +21,7 @@ version | toolchain ``18.1.40`` | ``GCCcore/12.1.0`` ``18.1.40`` | ``GCCcore/12.2.0`` ``18.1.40`` | ``GCCcore/12.3.0`` +``18.1.40`` | ``GCCcore/13.3.0`` ``18.1.40`` | ``GCCcore/8.2.0`` ``18.1.40`` | ``GCCcore/8.3.0`` ``4.8.30`` | ``intel/2016a`` diff --git a/docs/version-specific/supported-software/d/DB_File.md b/docs/version-specific/supported-software/d/DB_File.md index 9b1335729..832e1d819 100644 --- a/docs/version-specific/supported-software/d/DB_File.md +++ b/docs/version-specific/supported-software/d/DB_File.md @@ -18,6 +18,7 @@ version | versionsuffix | toolchain ``1.857`` | | ``GCCcore/11.2.0`` ``1.858`` | | ``GCCcore/11.3.0`` ``1.859`` | | ``GCCcore/12.3.0`` +``1.859`` | | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/d/DBus.md b/docs/version-specific/supported-software/d/DBus.md index 5cbda6803..69c1c656d 100644 --- a/docs/version-specific/supported-software/d/DBus.md +++ b/docs/version-specific/supported-software/d/DBus.md @@ -28,6 +28,7 @@ version | toolchain ``1.15.2`` | ``GCCcore/12.2.0`` ``1.15.4`` | ``GCCcore/12.3.0`` ``1.15.8`` | ``GCCcore/13.2.0`` +``1.15.8`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/d/DL_POLY_4.md b/docs/version-specific/supported-software/d/DL_POLY_4.md index 02664124c..871aa62c9 100644 --- a/docs/version-specific/supported-software/d/DL_POLY_4.md +++ b/docs/version-specific/supported-software/d/DL_POLY_4.md @@ -13,6 +13,7 @@ version | toolchain ``5.0.0`` | ``foss/2020b`` ``5.0.0`` | ``intel/2020b`` ``5.1.0`` | ``foss/2022b`` +``5.1.0`` | ``foss/2023a`` ``5.1.0`` | ``intel/2022b`` diff --git a/docs/version-specific/supported-software/d/DL_POLY_Classic_GUI.md b/docs/version-specific/supported-software/d/DL_POLY_Classic_GUI.md new file mode 100644 index 000000000..768b08a64 --- /dev/null +++ b/docs/version-specific/supported-software/d/DL_POLY_Classic_GUI.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# DL_POLY_Classic_GUI + +The DL_POLY Graphical User Interface (or GUI) is a program written in the Java language and is intended for use with the DL_POLY molecular simulation program. This is the GUI for DL_POLY Classic, it can also be used for DL_POLY_4. + +*homepage*: + +version | toolchain +--------|---------- +``1.10`` | ``system`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/d/DMTCP.md b/docs/version-specific/supported-software/d/DMTCP.md index 4f822af79..952af2a7c 100644 --- a/docs/version-specific/supported-software/d/DMTCP.md +++ b/docs/version-specific/supported-software/d/DMTCP.md @@ -19,6 +19,9 @@ version | toolchain ``2.6.0`` | ``GCCcore/8.2.0`` ``2.6.0`` | ``GCCcore/9.3.0`` ``3.0.0`` | ``GCCcore/11.3.0`` +``3.0.0`` | ``GCCcore/12.2.0`` +``3.0.0`` | ``GCCcore/12.3.0`` +``3.0.0`` | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/d/dblatex.md b/docs/version-specific/supported-software/d/dblatex.md new file mode 100644 index 000000000..86629c7a1 --- /dev/null +++ b/docs/version-specific/supported-software/d/dblatex.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# dblatex + +dblatex is a program that transforms your SGML/XML DocBook documents to DVI, PostScript or PDF by translating them into pure LaTeX as a first process. MathML 2.0 markups are supported, too. It started as a clone of DB2LaTeX. + +*homepage*: + +version | toolchain +--------|---------- +``0.3.12`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/d/dictys.md b/docs/version-specific/supported-software/d/dictys.md new file mode 100644 index 000000000..2fc04964b --- /dev/null +++ b/docs/version-specific/supported-software/d/dictys.md @@ -0,0 +1,18 @@ +--- +search: + boost: 0.5 +--- +# dictys + +Context specific and dynamic gene regulatory network reconstruction and analysis. + +*homepage*: + +version | versionsuffix | toolchain +--------|---------------|---------- +``1.1.0`` | ``-CUDA-12.1.1`` | ``foss/2023a`` +``1.1.0`` | | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/d/dorado.md b/docs/version-specific/supported-software/d/dorado.md index f3d3d8093..cc02c216a 100644 --- a/docs/version-specific/supported-software/d/dorado.md +++ b/docs/version-specific/supported-software/d/dorado.md @@ -15,6 +15,8 @@ version | versionsuffix | toolchain ``0.3.1`` | ``-CUDA-11.7.0`` | ``foss/2022a`` ``0.5.1`` | ``-CUDA-11.7.0`` | ``foss/2022a`` ``0.5.3`` | ``-CUDA-11.7.0`` | ``foss/2022a`` +``0.6.1`` | ``-CUDA-12.1.1`` | ``foss/2023a`` +``0.7.3`` | ``-CUDA-12.1.1`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/d/dtcmp.md b/docs/version-specific/supported-software/d/dtcmp.md index 06439934c..35827dd43 100644 --- a/docs/version-specific/supported-software/d/dtcmp.md +++ b/docs/version-specific/supported-software/d/dtcmp.md @@ -17,6 +17,7 @@ version | toolchain ``1.1.2`` | ``gompi/2020b`` ``1.1.4`` | ``gompi/2022a`` ``1.1.4`` | ``gompi/2023a`` +``1.1.5`` | ``gompi/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/d/duplex-tools.md b/docs/version-specific/supported-software/d/duplex-tools.md index e3083eee9..97489c759 100644 --- a/docs/version-specific/supported-software/d/duplex-tools.md +++ b/docs/version-specific/supported-software/d/duplex-tools.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``0.3.1`` | ``foss/2022a`` ``0.3.3`` | ``foss/2022a`` +``0.3.3`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/d/index.md b/docs/version-specific/supported-software/d/index.md index 2131aaeeb..79e340930 100644 --- a/docs/version-specific/supported-software/d/index.md +++ b/docs/version-specific/supported-software/d/index.md @@ -28,6 +28,7 @@ search: * [DBCSR](DBCSR.md) * [DBD-mysql](DBD-mysql.md) * [DBG2OLC](DBG2OLC.md) + * [dblatex](dblatex.md) * [DBus](DBus.md) * [dbus-glib](dbus-glib.md) * [dclone](dclone.md) @@ -79,6 +80,7 @@ search: * [DiCE-ML](DiCE-ML.md) * [dicom2nifti](dicom2nifti.md) * [DicomBrowser](DicomBrowser.md) + * [dictys](dictys.md) * [DiffBind](DiffBind.md) * [Diffutils](Diffutils.md) * [dijitso](dijitso.md) @@ -89,6 +91,7 @@ search: * [DjVuLibre](DjVuLibre.md) * [DL_POLY_4](DL_POLY_4.md) * [DL_POLY_Classic](DL_POLY_Classic.md) + * [DL_POLY_Classic_GUI](DL_POLY_Classic_GUI.md) * [dlb](dlb.md) * [dlib](dlib.md) * [DLPack](DLPack.md) diff --git a/docs/version-specific/supported-software/e/EGA-QuickView.md b/docs/version-specific/supported-software/e/EGA-QuickView.md new file mode 100644 index 000000000..1cac73787 --- /dev/null +++ b/docs/version-specific/supported-software/e/EGA-QuickView.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# EGA-QuickView + +EGA-QuickView is a FUSE file system to access EGA files remotely. + +*homepage*: + +version | toolchain +--------|---------- +``20240620`` | ``GCC/12.3.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/e/EMMAX.md b/docs/version-specific/supported-software/e/EMMAX.md new file mode 100644 index 000000000..58b2d4533 --- /dev/null +++ b/docs/version-specific/supported-software/e/EMMAX.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# EMMAX + +EMMAX is a statistical test for large scale human or model organism association mapping accounting for the sample structure + +*homepage*: + +version | toolchain +--------|---------- +``20100310`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/e/ESIpy.md b/docs/version-specific/supported-software/e/ESIpy.md new file mode 100644 index 000000000..122ee5f3e --- /dev/null +++ b/docs/version-specific/supported-software/e/ESIpy.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# ESIpy + +Program aimed at the calculation of population analysis and aromaticity indicators from different Hilbert space partitions. + +*homepage*: + +version | toolchain +--------|---------- +``20240709`` | ``foss/2022a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/e/ESMF.md b/docs/version-specific/supported-software/e/ESMF.md index 70648616d..3167d041d 100644 --- a/docs/version-specific/supported-software/e/ESMF.md +++ b/docs/version-specific/supported-software/e/ESMF.md @@ -32,6 +32,8 @@ version | versionsuffix | toolchain ``8.3.0`` | | ``foss/2022a`` ``8.3.0`` | | ``intel/2022a`` ``8.4.2`` | | ``foss/2022a`` +``8.6.0`` | | ``foss/2023a`` +``8.6.1`` | | ``foss/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/e/ESPResSo.md b/docs/version-specific/supported-software/e/ESPResSo.md index e4c7d0ace..06198b30f 100644 --- a/docs/version-specific/supported-software/e/ESPResSo.md +++ b/docs/version-specific/supported-software/e/ESPResSo.md @@ -16,6 +16,7 @@ version | versionsuffix | toolchain ``4.2.1`` | | ``foss/2022a`` ``4.2.1`` | | ``foss/2023a`` ``4.2.2`` | | ``foss/2023a`` +``4.2.2`` | | ``foss/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/e/EasyBuild.md b/docs/version-specific/supported-software/e/EasyBuild.md index e71ff68c3..c5e930f5f 100644 --- a/docs/version-specific/supported-software/e/EasyBuild.md +++ b/docs/version-specific/supported-software/e/EasyBuild.md @@ -111,6 +111,7 @@ version | toolchain ``4.8.2`` | ``system`` ``4.9.0`` | ``system`` ``4.9.1`` | ``system`` +``4.9.2`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/e/EvidentialGene.md b/docs/version-specific/supported-software/e/EvidentialGene.md index 896109a16..f123949c7 100644 --- a/docs/version-specific/supported-software/e/EvidentialGene.md +++ b/docs/version-specific/supported-software/e/EvidentialGene.md @@ -12,6 +12,7 @@ version | versionsuffix | toolchain --------|---------------|---------- ``2018.01.01`` | ``-Perl-5.24.1`` | ``intel/2017a`` ``2022.01.14`` | | ``gompi/2021b`` +``2023.07.15`` | | ``gompi/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/e/Exonerate.md b/docs/version-specific/supported-software/e/Exonerate.md index 379d4ba98..a4daa93ee 100644 --- a/docs/version-specific/supported-software/e/Exonerate.md +++ b/docs/version-specific/supported-software/e/Exonerate.md @@ -15,6 +15,7 @@ version | toolchain ``2.4.0`` | ``GCC/11.2.0`` ``2.4.0`` | ``GCC/11.3.0`` ``2.4.0`` | ``GCC/12.2.0`` +``2.4.0`` | ``GCC/12.3.0`` ``2.4.0`` | ``GCC/6.4.0-2.28`` ``2.4.0`` | ``GCC/8.3.0`` ``2.4.0`` | ``foss/2016a`` diff --git a/docs/version-specific/supported-software/e/Extrae.md b/docs/version-specific/supported-software/e/Extrae.md index dc3c75ba5..2f492127f 100644 --- a/docs/version-specific/supported-software/e/Extrae.md +++ b/docs/version-specific/supported-software/e/Extrae.md @@ -15,6 +15,7 @@ version | toolchain ``3.8.0`` | ``gompi/2020b`` ``3.8.3`` | ``gompi/2021a`` ``4.0.4`` | ``gompi/2022a`` +``4.2.0`` | ``gompi/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/e/ecBuild.md b/docs/version-specific/supported-software/e/ecBuild.md index 82b395e16..ad41ef6b7 100644 --- a/docs/version-specific/supported-software/e/ecBuild.md +++ b/docs/version-specific/supported-software/e/ecBuild.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``3.7.0`` | ``system`` ``3.8.0`` | ``system`` +``3.8.5`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/e/ecCodes.md b/docs/version-specific/supported-software/e/ecCodes.md index f8f91897a..d31c19f3d 100644 --- a/docs/version-specific/supported-software/e/ecCodes.md +++ b/docs/version-specific/supported-software/e/ecCodes.md @@ -21,6 +21,7 @@ version | versionsuffix | toolchain ``2.24.2`` | | ``gompi/2021b`` ``2.24.2`` | | ``iimpi/2021b`` ``2.27.0`` | | ``gompi/2022a`` +``2.27.0`` | | ``iimpi/2022a`` ``2.31.0`` | | ``gompi/2022b`` ``2.31.0`` | | ``gompi/2023a`` ``2.31.0`` | | ``gompi/2023b`` diff --git a/docs/version-specific/supported-software/e/einops.md b/docs/version-specific/supported-software/e/einops.md index 53258e847..1372679d2 100644 --- a/docs/version-specific/supported-software/e/einops.md +++ b/docs/version-specific/supported-software/e/einops.md @@ -13,6 +13,7 @@ version | toolchain ``0.3.2`` | ``GCCcore/10.2.0`` ``0.4.1`` | ``GCCcore/10.3.0`` ``0.4.1`` | ``GCCcore/11.3.0`` +``0.7.0`` | ``GCCcore/12.2.0`` ``0.7.0`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/e/elfutils.md b/docs/version-specific/supported-software/e/elfutils.md index 0435c357d..79377681c 100644 --- a/docs/version-specific/supported-software/e/elfutils.md +++ b/docs/version-specific/supported-software/e/elfutils.md @@ -20,6 +20,7 @@ version | toolchain ``0.189`` | ``GCCcore/12.2.0`` ``0.189`` | ``GCCcore/12.3.0`` ``0.190`` | ``GCCcore/13.2.0`` +``0.191`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/e/empanada-dl.md b/docs/version-specific/supported-software/e/empanada-dl.md new file mode 100644 index 000000000..359573586 --- /dev/null +++ b/docs/version-specific/supported-software/e/empanada-dl.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# empanada-dl + +Tool for panoptic segmentation of organelles in 2D and 3D electron microscopy (EM) images. + +*homepage*: + +version | toolchain +--------|---------- +``0.1.7`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/e/empanada-napari.md b/docs/version-specific/supported-software/e/empanada-napari.md new file mode 100644 index 000000000..68243603c --- /dev/null +++ b/docs/version-specific/supported-software/e/empanada-napari.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# empanada-napari + +Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari. + +*homepage*: + +version | toolchain +--------|---------- +``1.1.0`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/e/expat.md b/docs/version-specific/supported-software/e/expat.md index 653e0bf63..1914892a6 100644 --- a/docs/version-specific/supported-software/e/expat.md +++ b/docs/version-specific/supported-software/e/expat.md @@ -27,7 +27,6 @@ version | toolchain ``2.2.5`` | ``GCCcore/7.3.0`` ``2.2.6`` | ``GCCcore/8.2.0`` ``2.2.7`` | ``GCCcore/8.3.0`` -``2.2.9`` | ``FCC/4.5.0`` ``2.2.9`` | ``GCCcore/10.2.0`` ``2.2.9`` | ``GCCcore/10.3.0`` ``2.2.9`` | ``GCCcore/9.3.0`` diff --git a/docs/version-specific/supported-software/e/expecttest.md b/docs/version-specific/supported-software/e/expecttest.md index 6a8439b38..5b780b72b 100644 --- a/docs/version-specific/supported-software/e/expecttest.md +++ b/docs/version-specific/supported-software/e/expecttest.md @@ -17,6 +17,7 @@ version | toolchain ``0.1.3`` | ``GCCcore/12.2.0`` ``0.1.5`` | ``GCCcore/12.3.0`` ``0.2.1`` | ``GCCcore/13.2.0`` +``0.2.1`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/e/index.md b/docs/version-specific/supported-software/e/index.md index 447f1c36c..6ee528c80 100644 --- a/docs/version-specific/supported-software/e/index.md +++ b/docs/version-specific/supported-software/e/index.md @@ -26,6 +26,7 @@ search: * [ED2](ED2.md) * [EDirect](EDirect.md) * [edlib](edlib.md) + * [EGA-QuickView](EGA-QuickView.md) * [EggLib](EggLib.md) * [eggnog-mapper](eggnog-mapper.md) * [EGTtools](EGTtools.md) @@ -50,6 +51,9 @@ search: * [EMBOSS](EMBOSS.md) * [Embree](Embree.md) * [emcee](emcee.md) + * [EMMAX](EMMAX.md) + * [empanada-dl](empanada-dl.md) + * [empanada-napari](empanada-napari.md) * [EMU](EMU.md) * [enaBrowserTool](enaBrowserTool.md) * [enchant](enchant.md) @@ -65,6 +69,7 @@ search: * [EpiSCORE](EpiSCORE.md) * [eQuilibrator](eQuilibrator.md) * [EricScript](EricScript.md) + * [ESIpy](ESIpy.md) * [ESL-Bundle](ESL-Bundle.md) * [ESM-2](ESM-2.md) * [ESMF](ESMF.md) diff --git a/docs/version-specific/supported-software/f/FFTW.MPI.md b/docs/version-specific/supported-software/f/FFTW.MPI.md index b4f754c75..fc2330ce2 100644 --- a/docs/version-specific/supported-software/f/FFTW.MPI.md +++ b/docs/version-specific/supported-software/f/FFTW.MPI.md @@ -10,6 +10,7 @@ FFTW is a C subroutine library for computing the discrete Fourier transform (DFT version | toolchain --------|---------- +``3.3.10`` | ``gmpich/2024.06`` ``3.3.10`` | ``gompi/2022.05`` ``3.3.10`` | ``gompi/2022.10`` ``3.3.10`` | ``gompi/2022a`` @@ -18,6 +19,7 @@ version | toolchain ``3.3.10`` | ``gompi/2023a`` ``3.3.10`` | ``gompi/2023b`` ``3.3.10`` | ``gompi/2024.05`` +``3.3.10`` | ``gompi/2024a`` ``3.3.10`` | ``nvompi/2022.07`` diff --git a/docs/version-specific/supported-software/f/FFTW.md b/docs/version-specific/supported-software/f/FFTW.md index a2f787810..3c5906247 100644 --- a/docs/version-specific/supported-software/f/FFTW.md +++ b/docs/version-specific/supported-software/f/FFTW.md @@ -4,13 +4,12 @@ search: --- # FFTW -This is a fork of FFTW3 for the Armv8-A 64-bit architecture (AArch64) with 512-bit Scalable Vector Extension (SVE) support. +FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``1.0.0`` | ``-fujitsu`` | ``FCC/4.5.0`` ``2.1.5`` | | ``intel/2016b`` ``2.1.5`` | | ``intel/2017a`` ``2.1.5`` | | ``intel/2018b`` diff --git a/docs/version-specific/supported-software/f/FFmpeg.md b/docs/version-specific/supported-software/f/FFmpeg.md index 7d32bf76e..3cba9d755 100644 --- a/docs/version-specific/supported-software/f/FFmpeg.md +++ b/docs/version-specific/supported-software/f/FFmpeg.md @@ -45,6 +45,7 @@ version | toolchain ``5.1.2`` | ``GCCcore/12.2.0`` ``6.0`` | ``GCCcore/12.3.0`` ``6.0`` | ``GCCcore/13.2.0`` +``7.0.2`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/FLAC.md b/docs/version-specific/supported-software/f/FLAC.md index 00e397549..107489a6f 100644 --- a/docs/version-specific/supported-software/f/FLAC.md +++ b/docs/version-specific/supported-software/f/FLAC.md @@ -16,6 +16,8 @@ version | toolchain ``1.3.4`` | ``GCCcore/11.3.0`` ``1.4.2`` | ``GCCcore/12.2.0`` ``1.4.2`` | ``GCCcore/12.3.0`` +``1.4.3`` | ``GCCcore/13.2.0`` +``1.4.3`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/FUSE.md b/docs/version-specific/supported-software/f/FUSE.md index cf4f49905..23280f482 100644 --- a/docs/version-specific/supported-software/f/FUSE.md +++ b/docs/version-specific/supported-software/f/FUSE.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``3.14.1`` | ``GCCcore/11.3.0`` ``3.14.1`` | ``GCCcore/12.2.0`` +``3.16.2`` | ``GCCcore/12.3.0`` ``3.2.6`` | ``intel/2018a`` ``3.4.1`` | ``foss/2018a`` diff --git a/docs/version-specific/supported-software/f/FastTree.md b/docs/version-specific/supported-software/f/FastTree.md index d77c72bbe..665a36919 100644 --- a/docs/version-specific/supported-software/f/FastTree.md +++ b/docs/version-specific/supported-software/f/FastTree.md @@ -18,6 +18,7 @@ version | toolchain ``2.1.11`` | ``GCCcore/10.3.0`` ``2.1.11`` | ``GCCcore/11.2.0`` ``2.1.11`` | ``GCCcore/11.3.0`` +``2.1.11`` | ``GCCcore/12.2.0`` ``2.1.11`` | ``GCCcore/12.3.0`` ``2.1.11`` | ``GCCcore/8.2.0`` ``2.1.11`` | ``GCCcore/8.3.0`` diff --git a/docs/version-specific/supported-software/f/Filtlong.md b/docs/version-specific/supported-software/f/Filtlong.md index e428bacca..b0c0acb12 100644 --- a/docs/version-specific/supported-software/f/Filtlong.md +++ b/docs/version-specific/supported-software/f/Filtlong.md @@ -13,6 +13,7 @@ version | toolchain ``0.2.0`` | ``GCC/10.2.0`` ``0.2.0`` | ``foss/2016b`` ``0.2.1`` | ``GCC/10.3.0`` +``0.2.1`` | ``GCC/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/Flask.md b/docs/version-specific/supported-software/f/Flask.md index c49b05b59..b9e35d650 100644 --- a/docs/version-specific/supported-software/f/Flask.md +++ b/docs/version-specific/supported-software/f/Flask.md @@ -20,6 +20,7 @@ version | versionsuffix | toolchain ``2.2.3`` | | ``GCCcore/12.2.0`` ``2.3.3`` | | ``GCCcore/12.3.0`` ``3.0.0`` | | ``GCCcore/13.2.0`` +``3.0.3`` | | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/Flax.md b/docs/version-specific/supported-software/f/Flax.md new file mode 100644 index 000000000..0d38f5aa2 --- /dev/null +++ b/docs/version-specific/supported-software/f/Flax.md @@ -0,0 +1,18 @@ +--- +search: + boost: 0.5 +--- +# Flax + +Flax is a high-performance neural network library and ecosystem for JAX that is designed for flexibility: Try new forms of training by forking an example and by modifying the training loop, not by adding features to a framework. + +*homepage*: + +version | versionsuffix | toolchain +--------|---------------|---------- +``0.8.4`` | ``-CUDA-12.1.1`` | ``gfbf/2023a`` +``0.8.4`` | | ``gfbf/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/f/Flye.md b/docs/version-specific/supported-software/f/Flye.md index a50961677..6f9231138 100644 --- a/docs/version-specific/supported-software/f/Flye.md +++ b/docs/version-specific/supported-software/f/Flye.md @@ -23,6 +23,7 @@ version | versionsuffix | toolchain ``2.9.2`` | | ``GCC/11.3.0`` ``2.9.3`` | | ``GCC/10.3.0`` ``2.9.3`` | | ``GCC/12.3.0`` +``2.9.4`` | | ``GCC/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/FragGeneScan.md b/docs/version-specific/supported-software/f/FragGeneScan.md index ac07a25d1..a36accdec 100644 --- a/docs/version-specific/supported-software/f/FragGeneScan.md +++ b/docs/version-specific/supported-software/f/FragGeneScan.md @@ -14,6 +14,7 @@ version | toolchain ``1.31`` | ``GCCcore/10.3.0`` ``1.31`` | ``GCCcore/11.2.0`` ``1.31`` | ``GCCcore/11.3.0`` +``1.31`` | ``GCCcore/12.3.0`` ``1.31`` | ``GCCcore/8.2.0`` ``1.31`` | ``foss/2018b`` diff --git a/docs/version-specific/supported-software/f/FriBidi.md b/docs/version-specific/supported-software/f/FriBidi.md index c6ff68c92..9357cb33e 100644 --- a/docs/version-specific/supported-software/f/FriBidi.md +++ b/docs/version-specific/supported-software/f/FriBidi.md @@ -19,6 +19,7 @@ version | toolchain ``1.0.12`` | ``GCCcore/12.2.0`` ``1.0.12`` | ``GCCcore/12.3.0`` ``1.0.13`` | ``GCCcore/13.2.0`` +``1.0.15`` | ``GCCcore/13.3.0`` ``1.0.2`` | ``GCCcore/6.4.0`` ``1.0.5`` | ``GCCcore/7.3.0`` ``1.0.5`` | ``GCCcore/8.2.0`` diff --git a/docs/version-specific/supported-software/f/fastahack.md b/docs/version-specific/supported-software/f/fastahack.md index c9d78413e..9cf9c2c08 100644 --- a/docs/version-specific/supported-software/f/fastahack.md +++ b/docs/version-specific/supported-software/f/fastahack.md @@ -14,6 +14,7 @@ version | toolchain ``1.0.0`` | ``GCCcore/10.3.0`` ``1.0.0`` | ``GCCcore/11.2.0`` ``1.0.0`` | ``GCCcore/11.3.0`` +``1.0.0`` | ``GCCcore/12.2.0`` ``1.0.0`` | ``GCCcore/12.3.0`` ``1.0.0`` | ``GCCcore/9.3.0`` diff --git a/docs/version-specific/supported-software/f/fastfilters.md b/docs/version-specific/supported-software/f/fastfilters.md new file mode 100644 index 000000000..72974e024 --- /dev/null +++ b/docs/version-specific/supported-software/f/fastfilters.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# fastfilters + +Fast gaussian and derivative convolutional filters. + +*homepage*: + +version | toolchain +--------|---------- +``0.3`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/f/fastp.md b/docs/version-specific/supported-software/f/fastp.md index c1217d55e..afd4750c6 100644 --- a/docs/version-specific/supported-software/f/fastp.md +++ b/docs/version-specific/supported-software/f/fastp.md @@ -20,6 +20,7 @@ version | toolchain ``0.23.2`` | ``GCC/11.3.0`` ``0.23.4`` | ``GCC/12.2.0`` ``0.23.4`` | ``GCC/12.3.0`` +``0.23.4`` | ``GCC/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/ffnvcodec.md b/docs/version-specific/supported-software/f/ffnvcodec.md index 3acdd2b9b..e39577a89 100644 --- a/docs/version-specific/supported-software/f/ffnvcodec.md +++ b/docs/version-specific/supported-software/f/ffnvcodec.md @@ -13,6 +13,7 @@ version | toolchain ``11.1.5.2`` | ``system`` ``12.0.16.0`` | ``system`` ``12.1.14.0`` | ``system`` +``12.2.72.0`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/file.md b/docs/version-specific/supported-software/f/file.md index 42a7b7139..766417b8d 100644 --- a/docs/version-specific/supported-software/f/file.md +++ b/docs/version-specific/supported-software/f/file.md @@ -24,6 +24,7 @@ version | toolchain ``5.43`` | ``GCCcore/11.3.0`` ``5.43`` | ``GCCcore/12.2.0`` ``5.43`` | ``GCCcore/12.3.0`` +``5.43`` | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/filevercmp.md b/docs/version-specific/supported-software/f/filevercmp.md index 6bb959431..322a84cc0 100644 --- a/docs/version-specific/supported-software/f/filevercmp.md +++ b/docs/version-specific/supported-software/f/filevercmp.md @@ -15,6 +15,7 @@ version | toolchain ``20191210`` | ``GCCcore/10.3.0`` ``20191210`` | ``GCCcore/11.2.0`` ``20191210`` | ``GCCcore/11.3.0`` +``20191210`` | ``GCCcore/12.2.0`` ``20191210`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/f/fish.md b/docs/version-specific/supported-software/f/fish.md new file mode 100644 index 000000000..1499eb8d6 --- /dev/null +++ b/docs/version-specific/supported-software/f/fish.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# fish + +fish is a smart and user-friendly command line shell for Linux, macOS, and the rest of the family. + +*homepage*: + +version | toolchain +--------|---------- +``3.7.1`` | ``GCCcore/13.3.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/f/flash-attention.md b/docs/version-specific/supported-software/f/flash-attention.md new file mode 100644 index 000000000..ef3716b35 --- /dev/null +++ b/docs/version-specific/supported-software/f/flash-attention.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# flash-attention + +Fast and memory-efficient exact attention. + +*homepage*: + +version | versionsuffix | toolchain +--------|---------------|---------- +``2.6.3`` | ``-CUDA-12.1.1`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/f/flatbuffers-python.md b/docs/version-specific/supported-software/f/flatbuffers-python.md index 55e6fe35c..9e17e40a9 100644 --- a/docs/version-specific/supported-software/f/flatbuffers-python.md +++ b/docs/version-specific/supported-software/f/flatbuffers-python.md @@ -17,6 +17,7 @@ version | versionsuffix | toolchain ``2.0`` | | ``GCCcore/11.3.0`` ``23.1.4`` | | ``GCCcore/12.2.0`` ``23.5.26`` | | ``GCCcore/12.3.0`` +``24.3.25`` | | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/flatbuffers.md b/docs/version-specific/supported-software/f/flatbuffers.md index 1c5a02296..27d8e6095 100644 --- a/docs/version-specific/supported-software/f/flatbuffers.md +++ b/docs/version-specific/supported-software/f/flatbuffers.md @@ -20,6 +20,7 @@ version | toolchain ``23.1.4`` | ``GCCcore/12.2.0`` ``23.5.26`` | ``GCCcore/12.3.0`` ``23.5.26`` | ``GCCcore/13.2.0`` +``24.3.25`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/flex.md b/docs/version-specific/supported-software/f/flex.md index 98e97819e..1081edcd0 100644 --- a/docs/version-specific/supported-software/f/flex.md +++ b/docs/version-specific/supported-software/f/flex.md @@ -52,7 +52,6 @@ version | toolchain ``2.6.3`` | ``GCCcore/7.1.0`` ``2.6.3`` | ``gimkl/2017a`` ``2.6.3`` | ``system`` -``2.6.4`` | ``FCC/4.5.0`` ``2.6.4`` | ``GCCcore/10.1.0`` ``2.6.4`` | ``GCCcore/10.2.0`` ``2.6.4`` | ``GCCcore/10.3.0`` @@ -67,6 +66,7 @@ version | toolchain ``2.6.4`` | ``GCCcore/13.2.0`` ``2.6.4`` | ``GCCcore/13.3.0`` ``2.6.4`` | ``GCCcore/14.1.0`` +``2.6.4`` | ``GCCcore/14.2.0`` ``2.6.4`` | ``GCCcore/5.5.0`` ``2.6.4`` | ``GCCcore/6.3.0`` ``2.6.4`` | ``GCCcore/6.4.0`` diff --git a/docs/version-specific/supported-software/f/flit.md b/docs/version-specific/supported-software/f/flit.md index 442e3276e..1d7407f07 100644 --- a/docs/version-specific/supported-software/f/flit.md +++ b/docs/version-specific/supported-software/f/flit.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``3.9.0`` | ``GCCcore/12.3.0`` ``3.9.0`` | ``GCCcore/13.2.0`` +``3.9.0`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/fmt.md b/docs/version-specific/supported-software/f/fmt.md index 05904c1fc..0b629950b 100644 --- a/docs/version-specific/supported-software/f/fmt.md +++ b/docs/version-specific/supported-software/f/fmt.md @@ -13,6 +13,7 @@ version | toolchain ``10.0.0`` | ``GCCcore/12.3.0`` ``10.1.0`` | ``GCCcore/12.3.0`` ``10.2.0`` | ``GCCcore/13.2.0`` +``10.2.1`` | ``GCCcore/13.2.0`` ``3.0.1`` | ``foss/2016b`` ``3.0.1`` | ``intel/2016b`` ``3.0.2`` | ``GCCcore/6.4.0`` diff --git a/docs/version-specific/supported-software/f/fonttools.md b/docs/version-specific/supported-software/f/fonttools.md new file mode 100644 index 000000000..bd464203c --- /dev/null +++ b/docs/version-specific/supported-software/f/fonttools.md @@ -0,0 +1,21 @@ +--- +search: + boost: 0.5 +--- +# fonttools + +fontTools is a library for manipulating fonts, written in Python. The project includes the TTX tool, that can convert TrueType and OpenType fonts to and from an XML text format, which is also called TTX. It supports TrueType, OpenType, AFM and to an extent Type 1 and some Mac-specific formats. + +*homepage*: + +version | toolchain +--------|---------- +``4.53.1`` | ``GCCcore/11.3.0`` +``4.53.1`` | ``GCCcore/12.2.0`` +``4.53.1`` | ``GCCcore/12.3.0`` +``4.53.1`` | ``GCCcore/13.2.0`` +``4.53.1`` | ``GCCcore/13.3.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/f/foss.md b/docs/version-specific/supported-software/f/foss.md index bb16faf3f..68dcbdeaf 100644 --- a/docs/version-specific/supported-software/f/foss.md +++ b/docs/version-specific/supported-software/f/foss.md @@ -35,6 +35,7 @@ version | toolchain ``2023a`` | ``system`` ``2023b`` | ``system`` ``2024.05`` | ``system`` +``2024a`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/fplll.md b/docs/version-specific/supported-software/f/fplll.md index 7063d9079..853b21900 100644 --- a/docs/version-specific/supported-software/f/fplll.md +++ b/docs/version-specific/supported-software/f/fplll.md @@ -11,6 +11,7 @@ fplll contains implementations of several lattice algorithms. The implementatio version | toolchain --------|---------- ``5.4.5`` | ``GCCcore/11.3.0`` +``5.4.5`` | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/fpylll.md b/docs/version-specific/supported-software/f/fpylll.md index 874b181e7..b2d384ada 100644 --- a/docs/version-specific/supported-software/f/fpylll.md +++ b/docs/version-specific/supported-software/f/fpylll.md @@ -11,6 +11,7 @@ A Python wrapper for fplll. version | toolchain --------|---------- ``0.5.9`` | ``foss/2022a`` +``0.6.1`` | ``foss/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/fsm-lite.md b/docs/version-specific/supported-software/f/fsm-lite.md new file mode 100644 index 000000000..bab286ca3 --- /dev/null +++ b/docs/version-specific/supported-software/f/fsm-lite.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# fsm-lite + +A singe-core implemetation of frequency-based substring mining. + +*homepage*: + +version | toolchain +--------|---------- +``1.0`` | ``GCCcore/12.2.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/f/fsom.md b/docs/version-specific/supported-software/f/fsom.md index dad950c0d..f1728ab36 100644 --- a/docs/version-specific/supported-software/f/fsom.md +++ b/docs/version-specific/supported-software/f/fsom.md @@ -15,6 +15,7 @@ version | toolchain ``20141119`` | ``GCCcore/11.2.0`` ``20141119`` | ``GCCcore/9.3.0`` ``20151117`` | ``GCCcore/11.3.0`` +``20151117`` | ``GCCcore/12.2.0`` ``20151117`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/f/index.md b/docs/version-specific/supported-software/f/index.md index 33c7bcd9d..00fb6b77e 100644 --- a/docs/version-specific/supported-software/f/index.md +++ b/docs/version-specific/supported-software/f/index.md @@ -26,6 +26,7 @@ search: * [FastaIndex](FastaIndex.md) * [FastANI](FastANI.md) * [Fastaq](Fastaq.md) + * [fastfilters](fastfilters.md) * [FastFold](FastFold.md) * [fastjet](fastjet.md) * [fastjet-contrib](fastjet-contrib.md) @@ -49,7 +50,6 @@ search: * [fatslim](fatslim.md) * [fbm](fbm.md) * [FBPIC](FBPIC.md) - * [FCC](FCC.md) * [FCM](FCM.md) * [fdict](fdict.md) * [FDMNES](FDMNES.md) @@ -66,7 +66,6 @@ search: * [FFC](FFC.md) * [FFLAS-FFPACK](FFLAS-FFPACK.md) * [FFmpeg](FFmpeg.md) - * [ffmpi](ffmpi.md) * [ffnet](ffnet.md) * [ffnvcodec](ffnvcodec.md) * [fftlib](fftlib.md) @@ -93,6 +92,7 @@ search: * [Firefox](Firefox.md) * [FIRESTARTER](FIRESTARTER.md) * [FireWorks](FireWorks.md) + * [fish](fish.md) * [FIt-SNE](FIt-SNE.md) * [FIX](FIX.md) * [fixesproto](fixesproto.md) @@ -101,9 +101,11 @@ search: * [flair-NLP](flair-NLP.md) * [FLANN](FLANN.md) * [FLASH](FLASH.md) + * [flash-attention](flash-attention.md) * [Flask](Flask.md) * [flatbuffers](flatbuffers.md) * [flatbuffers-python](flatbuffers-python.md) + * [Flax](Flax.md) * [FLEUR](FLEUR.md) * [flex](flex.md) * [Flexbar](Flexbar.md) @@ -127,6 +129,7 @@ search: * [FoldX](FoldX.md) * [fontconfig](fontconfig.md) * [fontsproto](fontsproto.md) + * [fonttools](fonttools.md) * [forbear](forbear.md) * [FORD](FORD.md) * [foss](foss.md) @@ -160,12 +163,12 @@ search: * [FRUIT_processor](FRUIT_processor.md) * [FSL](FSL.md) * [FSLeyes](FSLeyes.md) + * [fsm-lite](fsm-lite.md) * [fsom](fsom.md) * [FSON](FSON.md) * [ftfy](ftfy.md) * [FTGL](FTGL.md) * [fugue](fugue.md) - * [Fujitsu](Fujitsu.md) * [fullrmc](fullrmc.md) * [fumi_tools](fumi_tools.md) * [funannotate](funannotate.md) diff --git a/docs/version-specific/supported-software/g/GCC.md b/docs/version-specific/supported-software/g/GCC.md index 556bf1d68..c5a2ee41a 100644 --- a/docs/version-specific/supported-software/g/GCC.md +++ b/docs/version-specific/supported-software/g/GCC.md @@ -24,6 +24,7 @@ version | versionsuffix | toolchain ``13.2.0`` | | ``system`` ``13.3.0`` | | ``system`` ``14.1.0`` | | ``system`` +``14.2.0`` | | ``system`` ``4.8.1`` | ``-CLooG`` | ``system`` ``4.8.1`` | | ``system`` ``4.8.2`` | ``-CLooG-multilib`` | ``system`` diff --git a/docs/version-specific/supported-software/g/GCCcore.md b/docs/version-specific/supported-software/g/GCCcore.md index 162355f55..783e35ce0 100644 --- a/docs/version-specific/supported-software/g/GCCcore.md +++ b/docs/version-specific/supported-software/g/GCCcore.md @@ -24,6 +24,7 @@ version | toolchain ``13.2.0`` | ``system`` ``13.3.0`` | ``system`` ``14.1.0`` | ``system`` +``14.2.0`` | ``system`` ``4.9.2`` | ``system`` ``4.9.3`` | ``system`` ``4.9.4`` | ``system`` diff --git a/docs/version-specific/supported-software/g/GDAL.md b/docs/version-specific/supported-software/g/GDAL.md index 4e0e75271..b94fae3d7 100644 --- a/docs/version-specific/supported-software/g/GDAL.md +++ b/docs/version-specific/supported-software/g/GDAL.md @@ -57,6 +57,7 @@ version | versionsuffix | toolchain ``3.5.0`` | | ``foss/2022a`` ``3.6.2`` | | ``foss/2022b`` ``3.7.1`` | | ``foss/2023a`` +``3.9.0`` | | ``foss/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/GDMA.md b/docs/version-specific/supported-software/g/GDMA.md new file mode 100644 index 000000000..6295cf9fe --- /dev/null +++ b/docs/version-specific/supported-software/g/GDMA.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# GDMA + +The GDMA program carries out Distributed Multipole Analysis of wavefunctions calculated by the Gaussian system of programs or the Psi4 package, using the formatted checkpoint files that they can produce. The result is a set of multipole moments at sites defined by the user (usually at the positions of the atomic nuclei) which, given an accurate wavefunction, provide an accurate description of the electrostatic field of the molecule. + +*homepage*: + +version | toolchain +--------|---------- +``2.3.3_20230603`` | ``GCC/12.3.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/g/GEOS.md b/docs/version-specific/supported-software/g/GEOS.md index d3a96d63f..fcec7d5ed 100644 --- a/docs/version-specific/supported-software/g/GEOS.md +++ b/docs/version-specific/supported-software/g/GEOS.md @@ -13,6 +13,7 @@ version | versionsuffix | toolchain ``3.10.3`` | | ``GCC/11.3.0`` ``3.11.1`` | | ``GCC/12.2.0`` ``3.12.0`` | | ``GCC/12.3.0`` +``3.12.1`` | | ``GCC/13.2.0`` ``3.5.0`` | ``-Python-2.7.11`` | ``intel/2016a`` ``3.5.0`` | ``-Python-2.7.12`` | ``intel/2016b`` ``3.6.1`` | ``-Python-2.7.12`` | ``foss/2016b`` diff --git a/docs/version-specific/supported-software/g/GHC.md b/docs/version-specific/supported-software/g/GHC.md index 494468562..4fab17d70 100644 --- a/docs/version-specific/supported-software/g/GHC.md +++ b/docs/version-specific/supported-software/g/GHC.md @@ -12,6 +12,7 @@ version | versionsuffix | toolchain --------|---------------|---------- ``6.12.3`` | | ``system`` ``8.6.5`` | ``-x86_64`` | ``system`` +``9.10.1`` | ``-x86_64`` | ``system`` ``9.2.2`` | ``-x86_64`` | ``system`` ``9.4.6`` | ``-x86_64`` | ``system`` diff --git a/docs/version-specific/supported-software/g/GLM.md b/docs/version-specific/supported-software/g/GLM.md index 3e1ca7c43..ec0bbe6b6 100644 --- a/docs/version-specific/supported-software/g/GLM.md +++ b/docs/version-specific/supported-software/g/GLM.md @@ -21,6 +21,7 @@ version | toolchain ``0.9.9.8`` | ``GCCcore/12.2.0`` ``0.9.9.8`` | ``GCCcore/12.3.0`` ``0.9.9.8`` | ``GCCcore/8.3.0`` +``1.0.1`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/GLib.md b/docs/version-specific/supported-software/g/GLib.md index 06361d03a..c4d9ae9a5 100644 --- a/docs/version-specific/supported-software/g/GLib.md +++ b/docs/version-specific/supported-software/g/GLib.md @@ -36,6 +36,7 @@ version | toolchain ``2.75.0`` | ``GCCcore/12.2.0`` ``2.77.1`` | ``GCCcore/12.3.0`` ``2.78.1`` | ``GCCcore/13.2.0`` +``2.80.4`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/GLibmm.md b/docs/version-specific/supported-software/g/GLibmm.md index 0d2ee25f9..df77f14f1 100644 --- a/docs/version-specific/supported-software/g/GLibmm.md +++ b/docs/version-specific/supported-software/g/GLibmm.md @@ -14,6 +14,10 @@ version | toolchain ``2.49.7`` | ``GCCcore/8.2.0`` ``2.49.7`` | ``GCCcore/8.3.0`` ``2.66.4`` | ``GCCcore/10.3.0`` +``2.72.1`` | ``GCCcore/11.3.0`` +``2.75.0`` | ``GCCcore/12.2.0`` +``2.77.0`` | ``GCCcore/12.3.0`` +``2.78.1`` | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/GOATOOLS.md b/docs/version-specific/supported-software/g/GOATOOLS.md index 49539f594..3f5d09d53 100644 --- a/docs/version-specific/supported-software/g/GOATOOLS.md +++ b/docs/version-specific/supported-software/g/GOATOOLS.md @@ -13,6 +13,7 @@ version | toolchain ``1.1.6`` | ``foss/2020b`` ``1.3.1`` | ``foss/2021b`` ``1.3.1`` | ``foss/2022a`` +``1.4.5`` | ``foss/2022b`` ``1.4.5`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/g/GPAW.md b/docs/version-specific/supported-software/g/GPAW.md index e8464f1e0..ff080c835 100644 --- a/docs/version-specific/supported-software/g/GPAW.md +++ b/docs/version-specific/supported-software/g/GPAW.md @@ -38,6 +38,8 @@ version | versionsuffix | toolchain ``24.1.0`` | | ``foss/2023a`` ``24.1.0`` | | ``intel/2022a`` ``24.1.0`` | | ``intel/2023a`` +``24.6.0`` | ``-ASE-3.23.0`` | ``foss/2023a`` +``24.6.0`` | ``-ASE-3.23.0`` | ``intel/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/GPflow.md b/docs/version-specific/supported-software/g/GPflow.md new file mode 100644 index 000000000..1ca36d0a1 --- /dev/null +++ b/docs/version-specific/supported-software/g/GPflow.md @@ -0,0 +1,19 @@ +--- +search: + boost: 0.5 +--- +# GPflow + +GPflow is a package for building Gaussian process models in Python. It implements modern Gaussian process inference for composable kernels and likelihoods. + +*homepage*: + +version | versionsuffix | toolchain +--------|---------------|---------- +``2.9.2`` | ``-CUDA-11.7.0`` | ``foss/2022a`` +``2.9.2`` | | ``foss/2022a`` +``2.9.2`` | | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/g/GPyOpt.md b/docs/version-specific/supported-software/g/GPyOpt.md index 2d4c9cc9c..115339c6e 100644 --- a/docs/version-specific/supported-software/g/GPyOpt.md +++ b/docs/version-specific/supported-software/g/GPyOpt.md @@ -10,6 +10,7 @@ GPyOpt is a Python open-source library for Bayesian Optimization version | toolchain --------|---------- +``1.2.6`` | ``foss/2023a`` ``1.2.6`` | ``intel/2020b`` diff --git a/docs/version-specific/supported-software/g/GROMACS.md b/docs/version-specific/supported-software/g/GROMACS.md index 77ab6c7c9..8805e774e 100644 --- a/docs/version-specific/supported-software/g/GROMACS.md +++ b/docs/version-specific/supported-software/g/GROMACS.md @@ -70,6 +70,7 @@ version | versionsuffix | toolchain ``2023.3`` | ``-CUDA-11.7.0`` | ``foss/2022a`` ``2023.3`` | | ``foss/2022a`` ``2023.3`` | ``-CUDA-12.1.1-PLUMED-2.9.0`` | ``foss/2023a`` +``2023.3`` | ``-PLUMED-2.9.0`` | ``foss/2023a`` ``2023.3`` | | ``foss/2023a`` ``2024.1`` | | ``foss/2023b`` ``5.1.2`` | ``-hybrid`` | ``foss/2016a`` diff --git a/docs/version-specific/supported-software/g/GTS.md b/docs/version-specific/supported-software/g/GTS.md index bb7b99bc0..bd2f4c5fc 100644 --- a/docs/version-specific/supported-software/g/GTS.md +++ b/docs/version-specific/supported-software/g/GTS.md @@ -16,6 +16,7 @@ version | toolchain ``0.7.6`` | ``GCCcore/11.3.0`` ``0.7.6`` | ``GCCcore/12.2.0`` ``0.7.6`` | ``GCCcore/12.3.0`` +``0.7.6`` | ``GCCcore/13.3.0`` ``0.7.6`` | ``GCCcore/8.3.0`` ``0.7.6`` | ``GCCcore/9.3.0`` ``0.7.6`` | ``foss/2016a`` diff --git a/docs/version-specific/supported-software/g/GeoDict.md b/docs/version-specific/supported-software/g/GeoDict.md new file mode 100644 index 000000000..51ab7c86a --- /dev/null +++ b/docs/version-specific/supported-software/g/GeoDict.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# GeoDict + +The innovative and easy-to-use material simulator GeoDict is the most complete software solution for multi-scale 3D image processing, modeling of materials, visualization, material property characterization, simulation-based material development, and optimization of processes. + +*homepage*: + +version | toolchain +--------|---------- +``2024.SP2`` | ``gmpich/2024.06`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/g/GetOrganelle.md b/docs/version-specific/supported-software/g/GetOrganelle.md index e8668b477..661e2da18 100644 --- a/docs/version-specific/supported-software/g/GetOrganelle.md +++ b/docs/version-specific/supported-software/g/GetOrganelle.md @@ -15,6 +15,7 @@ version | versionsuffix | toolchain ``1.7.5.3`` | | ``foss/2021b`` ``1.7.6.1`` | | ``foss/2021b`` ``1.7.7.0`` | | ``foss/2022a`` +``1.7.7.1`` | | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/GimmeMotifs.md b/docs/version-specific/supported-software/g/GimmeMotifs.md index 5e2e0dff4..31c486e2e 100644 --- a/docs/version-specific/supported-software/g/GimmeMotifs.md +++ b/docs/version-specific/supported-software/g/GimmeMotifs.md @@ -11,6 +11,7 @@ Suite of motif tools, including a motif prediction pipeline for ChIP-seq experim version | toolchain --------|---------- ``0.17.2`` | ``foss/2022a`` +``0.17.2`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/gubbins.md b/docs/version-specific/supported-software/g/Gubbins.md similarity index 97% rename from docs/version-specific/supported-software/g/gubbins.md rename to docs/version-specific/supported-software/g/Gubbins.md index 7bb810ecb..185b3483f 100644 --- a/docs/version-specific/supported-software/g/gubbins.md +++ b/docs/version-specific/supported-software/g/Gubbins.md @@ -2,7 +2,7 @@ search: boost: 0.5 --- -# gubbins +# Gubbins Gubbins (Genealogies Unbiased By recomBinations In Nucleotide Sequences) is an algorithm that iteratively identifies loci containing elevated densities of base substitutions while concurrently constructing a phylogeny based on the putative point mutations outside of these regions. Simulations demonstrate the algorithm generates highly accurate reconstructions under realistic models of short-term bacterial evolution, and can be run in only a few hours on alignments of hundreds of bacterial genome sequences. @@ -11,6 +11,7 @@ Gubbins (Genealogies Unbiased By recomBinations In Nucleotide Sequences) is an a version | toolchain --------|---------- ``2.4.0`` | ``system`` +``3.3.5`` | ``foss/2022b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/Guile.md b/docs/version-specific/supported-software/g/Guile.md index 0515398a6..b674d6289 100644 --- a/docs/version-specific/supported-software/g/Guile.md +++ b/docs/version-specific/supported-software/g/Guile.md @@ -24,10 +24,12 @@ version | toolchain ``1.8.8`` | ``intel/2016b`` ``2.0.11`` | ``GCC/4.9.3-2.25`` ``2.0.11`` | ``foss/2016a`` +``2.0.14`` | ``GCCcore/13.3.0`` ``2.2.2`` | ``GCCcore/6.4.0`` ``2.2.4`` | ``GCCcore/7.3.0`` ``2.2.4`` | ``GCCcore/9.3.0`` ``2.2.7`` | ``GCCcore/10.3.0`` +``3.0.10`` | ``GCCcore/13.3.0`` ``3.0.7`` | ``GCCcore/11.2.0`` ``3.0.8`` | ``GCCcore/11.3.0`` ``3.0.9`` | ``GCCcore/10.2.0`` diff --git a/docs/version-specific/supported-software/g/Gurobi.md b/docs/version-specific/supported-software/g/Gurobi.md index 90701614e..2217e5b6e 100644 --- a/docs/version-specific/supported-software/g/Gurobi.md +++ b/docs/version-specific/supported-software/g/Gurobi.md @@ -13,6 +13,7 @@ version | versionsuffix | toolchain ``10.0.1`` | | ``GCCcore/11.3.0`` ``10.0.1`` | | ``GCCcore/12.2.0`` ``11.0.0`` | | ``GCCcore/12.3.0`` +``11.0.2`` | | ``GCCcore/12.3.0`` ``6.5.1`` | | ``system`` ``6.5.2`` | | ``system`` ``7.0.1`` | | ``system`` diff --git a/docs/version-specific/supported-software/g/Gymnasium.md b/docs/version-specific/supported-software/g/Gymnasium.md new file mode 100644 index 000000000..0601d5af2 --- /dev/null +++ b/docs/version-specific/supported-software/g/Gymnasium.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# Gymnasium + +Gymnasium is an open source Python library for developing and comparing reinforcement learning algorithms by providing a standard API to communicate between learning algorithms and environments, as well as a standard set of environments compliant with that API. + +*homepage*: + +version | toolchain +--------|---------- +``0.29.1`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/g/g2lib.md b/docs/version-specific/supported-software/g/g2lib.md index 164d02ec2..11d50411d 100644 --- a/docs/version-specific/supported-software/g/g2lib.md +++ b/docs/version-specific/supported-software/g/g2lib.md @@ -19,6 +19,7 @@ version | toolchain ``3.1.0`` | ``intel/2018b`` ``3.2.0`` | ``GCCcore/10.2.0`` ``3.2.0`` | ``GCCcore/10.3.0`` +``3.2.0`` | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/gap.md b/docs/version-specific/supported-software/g/gap.md index 18e1dc58f..5abc91ed7 100644 --- a/docs/version-specific/supported-software/g/gap.md +++ b/docs/version-specific/supported-software/g/gap.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``4.11.0`` | ``foss/2019a`` ``4.12.2`` | ``foss/2022a`` +``4.13.0`` | ``foss/2023b`` ``4.9.3`` | ``intel/2018b`` diff --git a/docs/version-specific/supported-software/g/gawk.md b/docs/version-specific/supported-software/g/gawk.md index ac50b5e19..0386a4a81 100644 --- a/docs/version-specific/supported-software/g/gawk.md +++ b/docs/version-specific/supported-software/g/gawk.md @@ -15,6 +15,7 @@ version | toolchain ``5.1.1`` | ``GCC/11.2.0`` ``5.1.1`` | ``GCC/11.3.0`` ``5.3.0`` | ``GCC/12.2.0`` +``5.3.0`` | ``GCC/12.3.0`` ``5.3.0`` | ``GCC/13.2.0`` diff --git a/docs/version-specific/supported-software/g/gc.md b/docs/version-specific/supported-software/g/gc.md index 523a19180..e32b97aff 100644 --- a/docs/version-specific/supported-software/g/gc.md +++ b/docs/version-specific/supported-software/g/gc.md @@ -23,6 +23,7 @@ version | toolchain ``8.2.2`` | ``GCCcore/11.3.0`` ``8.2.4`` | ``GCCcore/12.3.0`` ``8.2.6`` | ``GCCcore/13.2.0`` +``8.2.6`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/genomepy.md b/docs/version-specific/supported-software/g/genomepy.md index 0f4cec0ee..9632f0ecb 100644 --- a/docs/version-specific/supported-software/g/genomepy.md +++ b/docs/version-specific/supported-software/g/genomepy.md @@ -11,6 +11,7 @@ genomepy is designed to provide a simple and straightforward way to download and version | toolchain --------|---------- ``0.15.0`` | ``foss/2022a`` +``0.16.1`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/gensim.md b/docs/version-specific/supported-software/g/gensim.md index 04fdd7818..ada3d950f 100644 --- a/docs/version-specific/supported-software/g/gensim.md +++ b/docs/version-specific/supported-software/g/gensim.md @@ -14,6 +14,7 @@ version | versionsuffix | toolchain ``3.8.3`` | | ``foss/2020b`` ``3.8.3`` | | ``intel/2020b`` ``4.2.0`` | | ``foss/2021a`` +``4.3.2`` | | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/gfbf.md b/docs/version-specific/supported-software/g/gfbf.md index 78f20d818..0092918e3 100644 --- a/docs/version-specific/supported-software/g/gfbf.md +++ b/docs/version-specific/supported-software/g/gfbf.md @@ -16,6 +16,7 @@ version | toolchain ``2023a`` | ``system`` ``2023b`` | ``system`` ``2024.05`` | ``system`` +``2024a`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/gffutils.md b/docs/version-specific/supported-software/g/gffutils.md index c68e98e0f..b7f300ab7 100644 --- a/docs/version-specific/supported-software/g/gffutils.md +++ b/docs/version-specific/supported-software/g/gffutils.md @@ -11,6 +11,7 @@ Gffutils is a Python package for working with and manipulating the GFF and GTF version | toolchain --------|---------- ``0.12`` | ``foss/2022b`` +``0.13`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/gflags.md b/docs/version-specific/supported-software/g/gflags.md index 79766c137..221b777f0 100644 --- a/docs/version-specific/supported-software/g/gflags.md +++ b/docs/version-specific/supported-software/g/gflags.md @@ -19,6 +19,7 @@ version | toolchain ``2.2.2`` | ``GCCcore/11.2.0`` ``2.2.2`` | ``GCCcore/11.3.0`` ``2.2.2`` | ``GCCcore/12.3.0`` +``2.2.2`` | ``GCCcore/13.3.0`` ``2.2.2`` | ``GCCcore/8.2.0`` ``2.2.2`` | ``GCCcore/8.3.0`` ``2.2.2`` | ``GCCcore/9.3.0`` diff --git a/docs/version-specific/supported-software/g/gh.md b/docs/version-specific/supported-software/g/gh.md index 25965960f..5a76ed624 100644 --- a/docs/version-specific/supported-software/g/gh.md +++ b/docs/version-specific/supported-software/g/gh.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``1.3.1`` | ``system`` ``2.20.2`` | ``system`` +``2.52.0`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/giflib.md b/docs/version-specific/supported-software/g/giflib.md index 6a3cc0fac..69e45676d 100644 --- a/docs/version-specific/supported-software/g/giflib.md +++ b/docs/version-specific/supported-software/g/giflib.md @@ -19,6 +19,7 @@ version | toolchain ``5.2.1`` | ``GCCcore/12.2.0`` ``5.2.1`` | ``GCCcore/12.3.0`` ``5.2.1`` | ``GCCcore/13.2.0`` +``5.2.1`` | ``GCCcore/13.3.0`` ``5.2.1`` | ``GCCcore/8.3.0`` ``5.2.1`` | ``GCCcore/9.3.0`` diff --git a/docs/version-specific/supported-software/g/git-annex.md b/docs/version-specific/supported-software/g/git-annex.md index d5bf6f6f9..0940ff948 100644 --- a/docs/version-specific/supported-software/g/git-annex.md +++ b/docs/version-specific/supported-software/g/git-annex.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``10.20230802`` | ``GCCcore/12.2.0`` ``10.20230802`` | ``GCCcore/12.3.0`` +``10.20240731`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/gmpflf.md b/docs/version-specific/supported-software/g/gmpflf.md new file mode 100644 index 000000000..a9cef7635 --- /dev/null +++ b/docs/version-specific/supported-software/g/gmpflf.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# gmpflf + +GNU Compiler Collection (GCC) based compiler toolchain, including MPICH for MPI support, FlexiBLAS (OpenBLAS and LAPACK), FFTW and ScaLAPACK. + +*homepage*: <(none)> + +version | toolchain +--------|---------- +``2024.06`` | ``system`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/g/gmpich.md b/docs/version-specific/supported-software/g/gmpich.md index 4e9cad37e..21b1f8e39 100644 --- a/docs/version-specific/supported-software/g/gmpich.md +++ b/docs/version-specific/supported-software/g/gmpich.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``2016a`` | ``system`` ``2017.08`` | ``system`` +``2024.06`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/gmpy2.md b/docs/version-specific/supported-software/g/gmpy2.md index 8f256352e..415d37c0a 100644 --- a/docs/version-specific/supported-software/g/gmpy2.md +++ b/docs/version-specific/supported-software/g/gmpy2.md @@ -31,6 +31,7 @@ version | versionsuffix | toolchain ``2.1.5`` | | ``GCC/12.2.0`` ``2.1.5`` | | ``GCC/12.3.0`` ``2.1.5`` | | ``GCC/13.2.0`` +``2.2.0`` | | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/gompi.md b/docs/version-specific/supported-software/g/gompi.md index 61cac0fa2..3c89aef49 100644 --- a/docs/version-specific/supported-software/g/gompi.md +++ b/docs/version-specific/supported-software/g/gompi.md @@ -35,6 +35,7 @@ version | versionsuffix | toolchain ``2023a`` | | ``system`` ``2023b`` | | ``system`` ``2024.05`` | | ``system`` +``2024a`` | | ``system`` ``system`` | ``-2.29`` | ``system`` diff --git a/docs/version-specific/supported-software/g/googletest.md b/docs/version-specific/supported-software/g/googletest.md index cbb798ebf..afee00c37 100644 --- a/docs/version-specific/supported-software/g/googletest.md +++ b/docs/version-specific/supported-software/g/googletest.md @@ -19,6 +19,7 @@ version | toolchain ``1.12.1`` | ``GCCcore/12.2.0`` ``1.13.0`` | ``GCCcore/12.3.0`` ``1.14.0`` | ``GCCcore/13.2.0`` +``1.15.2`` | ``GCCcore/13.3.0`` ``1.8.0`` | ``GCCcore/6.3.0`` ``1.8.0`` | ``GCCcore/6.4.0`` ``1.8.0`` | ``foss/2016b`` diff --git a/docs/version-specific/supported-software/g/graph-tool.md b/docs/version-specific/supported-software/g/graph-tool.md index 6604801d7..2649c5520 100644 --- a/docs/version-specific/supported-software/g/graph-tool.md +++ b/docs/version-specific/supported-software/g/graph-tool.md @@ -13,6 +13,7 @@ version | versionsuffix | toolchain ``2.26`` | ``-Python-3.6.3`` | ``foss/2017b`` ``2.27`` | ``-Python-3.6.6`` | ``foss/2018b`` ``2.55`` | | ``foss/2022a`` +``2.59`` | | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/graphite2.md b/docs/version-specific/supported-software/g/graphite2.md index fc4bded4d..b64e5c514 100644 --- a/docs/version-specific/supported-software/g/graphite2.md +++ b/docs/version-specific/supported-software/g/graphite2.md @@ -17,6 +17,7 @@ version | toolchain ``1.3.14`` | ``GCCcore/12.2.0`` ``1.3.14`` | ``GCCcore/12.3.0`` ``1.3.14`` | ``GCCcore/13.2.0`` +``1.3.14`` | ``GCCcore/13.3.0`` ``1.3.14`` | ``GCCcore/8.3.0`` diff --git a/docs/version-specific/supported-software/g/groff.md b/docs/version-specific/supported-software/g/groff.md index 8608c5666..c22d3dda2 100644 --- a/docs/version-specific/supported-software/g/groff.md +++ b/docs/version-specific/supported-software/g/groff.md @@ -10,7 +10,6 @@ Groff (GNU troff) is a typesetting system that reads plain text mixed with forma version | toolchain --------|---------- -``1.22.4`` | ``FCC/4.5.0`` ``1.22.4`` | ``GCCcore/10.2.0`` ``1.22.4`` | ``GCCcore/10.3.0`` ``1.22.4`` | ``GCCcore/11.2.0`` @@ -21,6 +20,7 @@ version | toolchain ``1.22.4`` | ``GCCcore/8.3.0`` ``1.22.4`` | ``GCCcore/9.3.0`` ``1.23.0`` | ``GCCcore/13.2.0`` +``1.23.0`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/grpcio.md b/docs/version-specific/supported-software/g/grpcio.md index 8f8837a63..1a9901b22 100644 --- a/docs/version-specific/supported-software/g/grpcio.md +++ b/docs/version-specific/supported-software/g/grpcio.md @@ -10,6 +10,7 @@ gRPC is a modern, open source, high-performance remote procedure call (RPC) fram version | toolchain --------|---------- +``1.57.0`` | ``GCCcore/12.2.0`` ``1.57.0`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/g/gtk-doc.md b/docs/version-specific/supported-software/g/gtk-doc.md new file mode 100644 index 000000000..6d8d5d2b9 --- /dev/null +++ b/docs/version-specific/supported-software/g/gtk-doc.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# gtk-doc + +Documentation tool for public library API + +*homepage*: + +version | toolchain +--------|---------- +``1.34.0`` | ``GCCcore/12.3.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/g/index.md b/docs/version-specific/supported-software/g/index.md index fecca6604..fdd80c671 100644 --- a/docs/version-specific/supported-software/g/index.md +++ b/docs/version-specific/supported-software/g/index.md @@ -52,6 +52,7 @@ search: * [GDGraph](GDGraph.md) * [gdist](gdist.md) * [Gdk-Pixbuf](Gdk-Pixbuf.md) + * [GDMA](GDMA.md) * [GDRCopy](GDRCopy.md) * [Gdspy](Gdspy.md) * [Geant4](Geant4.md) @@ -80,6 +81,7 @@ search: * [genozip](genozip.md) * [gensim](gensim.md) * [geocube](geocube.md) + * [GeoDict](GeoDict.md) * [geopandas](geopandas.md) * [geopy](geopy.md) * [georges](georges.md) @@ -149,6 +151,7 @@ search: * [GMAP-GSNAP](GMAP-GSNAP.md) * [GMP](GMP.md) * [GMP-ECM](GMP-ECM.md) + * [gmpflf](gmpflf.md) * [gmpich](gmpich.md) * [gmpolf](gmpolf.md) * [gmpy2](gmpy2.md) @@ -181,6 +184,7 @@ search: * [GPAW-setups](GPAW-setups.md) * [gperf](gperf.md) * [gperftools](gperftools.md) + * [GPflow](GPflow.md) * [gpustat](gpustat.md) * [GPy](GPy.md) * [GPyOpt](GPyOpt.md) @@ -230,19 +234,21 @@ search: * [gsw](gsw.md) * [GTDB-Tk](GTDB-Tk.md) * [GTK+](GTK+.md) + * [gtk-doc](gtk-doc.md) * [GTK2](GTK2.md) * [GTK3](GTK3.md) * [GTK4](GTK4.md) * [GtkSourceView](GtkSourceView.md) * [GTOOL](GTOOL.md) * [GTS](GTS.md) - * [gubbins](gubbins.md) + * [Gubbins](Gubbins.md) * [guenomu](guenomu.md) * [GUIDANCE](GUIDANCE.md) * [Guile](Guile.md) * [GULP](GULP.md) * [Gurobi](Gurobi.md) * [GUSHR](GUSHR.md) + * [Gymnasium](Gymnasium.md) * [gzip](gzip.md) diff --git a/docs/version-specific/supported-software/h/HDBSCAN.md b/docs/version-specific/supported-software/h/HDBSCAN.md index e8bd6a2a3..a8b7e81f8 100644 --- a/docs/version-specific/supported-software/h/HDBSCAN.md +++ b/docs/version-specific/supported-software/h/HDBSCAN.md @@ -13,6 +13,7 @@ version | versionsuffix | toolchain ``0.8.24`` | ``-Python-3.7.4`` | ``foss/2019b`` ``0.8.27`` | | ``foss/2021a`` ``0.8.29`` | | ``foss/2022a`` +``0.8.38.post1`` | | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/h/HDF.md b/docs/version-specific/supported-software/h/HDF.md index ac28def39..721d291bf 100644 --- a/docs/version-specific/supported-software/h/HDF.md +++ b/docs/version-specific/supported-software/h/HDF.md @@ -6,7 +6,7 @@ search: HDF (also known as HDF4) is a library and multi-object file format for storing and managing data between machines. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- diff --git a/docs/version-specific/supported-software/h/HERRO.md b/docs/version-specific/supported-software/h/HERRO.md new file mode 100644 index 000000000..be6fc579a --- /dev/null +++ b/docs/version-specific/supported-software/h/HERRO.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# HERRO + +HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of >= 10 kbps is recommended). + +*homepage*: + +version | toolchain +--------|---------- +``0.1.0_20240808`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/h/HOMER.md b/docs/version-specific/supported-software/h/HOMER.md index c41293a03..2684701fb 100644 --- a/docs/version-specific/supported-software/h/HOMER.md +++ b/docs/version-specific/supported-software/h/HOMER.md @@ -11,6 +11,7 @@ HOMER (Hypergeometric Optimization of Motif EnRichment) is a suite of tools for version | versionsuffix | toolchain --------|---------------|---------- ``4.11`` | ``-R-4.3.2`` | ``foss/2023a`` +``4.11.1`` | | ``foss/2022b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/h/HPL.md b/docs/version-specific/supported-software/h/HPL.md index 68dd2c0a7..39424d244 100644 --- a/docs/version-specific/supported-software/h/HPL.md +++ b/docs/version-specific/supported-software/h/HPL.md @@ -77,7 +77,6 @@ version | versionsuffix | toolchain ``2.3`` | | ``CrayCCE/19.06`` ``2.3`` | | ``CrayGNU/19.06`` ``2.3`` | | ``CrayIntel/19.06`` -``2.3`` | | ``Fujitsu/21.05`` ``2.3`` | | ``foss/2019a`` ``2.3`` | | ``foss/2019b`` ``2.3`` | | ``foss/2020a`` @@ -92,8 +91,10 @@ version | versionsuffix | toolchain ``2.3`` | | ``foss/2023a`` ``2.3`` | | ``foss/2023b`` ``2.3`` | | ``foss/2024.05`` +``2.3`` | | ``foss/2024a`` ``2.3`` | | ``fosscuda/2019b`` ``2.3`` | | ``fosscuda/2020a`` +``2.3`` | | ``gmpflf/2024.06`` ``2.3`` | | ``gobff/2020.06-amd`` ``2.3`` | | ``gobff/2020.11`` ``2.3`` | | ``gobff/2020b`` @@ -125,6 +126,7 @@ version | versionsuffix | toolchain ``2.3`` | | ``intel/2023.07`` ``2.3`` | | ``intel/2023a`` ``2.3`` | | ``intel/2023b`` +``2.3`` | | ``intel/2024a`` ``2.3`` | | ``intelcuda/2019b`` ``2.3`` | | ``intelcuda/2020a`` ``2.3`` | | ``iomkl/2019.01`` diff --git a/docs/version-specific/supported-software/h/HTSeq.md b/docs/version-specific/supported-software/h/HTSeq.md index 3897da2e2..b00a935cf 100644 --- a/docs/version-specific/supported-software/h/HTSeq.md +++ b/docs/version-specific/supported-software/h/HTSeq.md @@ -29,6 +29,7 @@ version | versionsuffix | toolchain ``0.9.1`` | ``-Python-3.6.3`` | ``intel/2017b`` ``0.9.1`` | ``-Python-2.7.14`` | ``intel/2018a`` ``2.0.2`` | | ``foss/2022a`` +``2.0.7`` | | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/h/HiCMatrix.md b/docs/version-specific/supported-software/h/HiCMatrix.md index 492e0f9b3..81edb021e 100644 --- a/docs/version-specific/supported-software/h/HiCMatrix.md +++ b/docs/version-specific/supported-software/h/HiCMatrix.md @@ -11,6 +11,7 @@ This library implements the central class of HiCExplorer to manage Hi-C interact version | toolchain --------|---------- ``17`` | ``foss/2022a`` +``17.2`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/h/Highway.md b/docs/version-specific/supported-software/h/Highway.md index 32426bf3c..2682e86cd 100644 --- a/docs/version-specific/supported-software/h/Highway.md +++ b/docs/version-specific/supported-software/h/Highway.md @@ -17,6 +17,7 @@ version | toolchain ``1.0.4`` | ``GCCcore/11.3.0`` ``1.0.4`` | ``GCCcore/12.3.0`` ``1.0.7`` | ``GCCcore/13.2.0`` +``1.2.0`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/h/Hypre.md b/docs/version-specific/supported-software/h/Hypre.md index 51c5c2ede..a486593bf 100644 --- a/docs/version-specific/supported-software/h/Hypre.md +++ b/docs/version-specific/supported-software/h/Hypre.md @@ -29,6 +29,7 @@ version | toolchain ``2.25.0`` | ``foss/2022a`` ``2.27.0`` | ``foss/2022b`` ``2.29.0`` | ``foss/2023a`` +``2.31.0`` | ``foss/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/h/hatchling.md b/docs/version-specific/supported-software/h/hatchling.md index dd5bdfce5..e82aac42f 100644 --- a/docs/version-specific/supported-software/h/hatchling.md +++ b/docs/version-specific/supported-software/h/hatchling.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``1.18.0`` | ``GCCcore/12.3.0`` ``1.18.0`` | ``GCCcore/13.2.0`` +``1.24.2`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/h/help2man.md b/docs/version-specific/supported-software/h/help2man.md index a25608b23..f1db7cacd 100644 --- a/docs/version-specific/supported-software/h/help2man.md +++ b/docs/version-specific/supported-software/h/help2man.md @@ -31,7 +31,6 @@ version | toolchain ``1.47.8`` | ``GCCcore/7.4.0`` ``1.47.8`` | ``GCCcore/8.3.0`` ``1.47.8`` | ``GCCcore/8.4.0`` -``1.48.3`` | ``FCC/4.5.0`` ``1.48.3`` | ``GCCcore/10.3.0`` ``1.48.3`` | ``GCCcore/11.1.0`` ``1.48.3`` | ``GCCcore/11.2.0`` @@ -46,6 +45,7 @@ version | toolchain ``1.49.3`` | ``GCCcore/13.2.0`` ``1.49.3`` | ``GCCcore/13.3.0`` ``1.49.3`` | ``GCCcore/14.1.0`` +``1.49.3`` | ``GCCcore/14.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/h/hiredis.md b/docs/version-specific/supported-software/h/hiredis.md index addc111e4..25078eebe 100644 --- a/docs/version-specific/supported-software/h/hiredis.md +++ b/docs/version-specific/supported-software/h/hiredis.md @@ -15,6 +15,7 @@ version | toolchain ``1.2.0`` | ``GCCcore/12.2.0`` ``1.2.0`` | ``GCCcore/12.3.0`` ``1.2.0`` | ``GCCcore/13.2.0`` +``1.2.0`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/h/histolab.md b/docs/version-specific/supported-software/h/histolab.md index d085733df..120e697cb 100644 --- a/docs/version-specific/supported-software/h/histolab.md +++ b/docs/version-specific/supported-software/h/histolab.md @@ -12,6 +12,8 @@ version | toolchain --------|---------- ``0.4.1`` | ``foss/2021a`` ``0.4.1`` | ``foss/2021b`` +``0.6.0`` | ``foss/2022a`` +``0.7.0`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/h/hypothesis.md b/docs/version-specific/supported-software/h/hypothesis.md index 9bcda71a8..fe3f0e277 100644 --- a/docs/version-specific/supported-software/h/hypothesis.md +++ b/docs/version-specific/supported-software/h/hypothesis.md @@ -20,6 +20,7 @@ version | versionsuffix | toolchain ``5.41.2`` | | ``GCCcore/10.2.0`` ``5.41.5`` | | ``GCCcore/10.2.0`` ``5.6.0`` | ``-Python-3.8.2`` | ``GCCcore/9.3.0`` +``6.103.1`` | | ``GCCcore/13.3.0`` ``6.13.1`` | | ``GCCcore/10.3.0`` ``6.14.6`` | | ``GCCcore/11.2.0`` ``6.46.7`` | | ``GCCcore/11.3.0`` diff --git a/docs/version-specific/supported-software/h/index.md b/docs/version-specific/supported-software/h/index.md index a27c4c816..409994a01 100644 --- a/docs/version-specific/supported-software/h/index.md +++ b/docs/version-specific/supported-software/h/index.md @@ -43,6 +43,7 @@ search: * [help2man](help2man.md) * [HepMC](HepMC.md) * [HepMC3](HepMC3.md) + * [HERRO](HERRO.md) * [hevea](hevea.md) * [HF-Datasets](HF-Datasets.md) * [HH-suite](HH-suite.md) diff --git a/docs/version-specific/supported-software/i/IEntropy.md b/docs/version-specific/supported-software/i/IEntropy.md new file mode 100644 index 000000000..2e92c2453 --- /dev/null +++ b/docs/version-specific/supported-software/i/IEntropy.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# IEntropy + +Here, by deriving entropy decomposition formula, we proposed a feature selection method, intrinsic entropy (IE) model, to identify the informative genes for accurately clustering analysis. + +*homepage*: + +version | versionsuffix | toolchain +--------|---------------|---------- +``2024.06.12`` | ``-R-4.3.2`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/i/IGV.md b/docs/version-specific/supported-software/i/IGV.md index 338237db6..79870493c 100644 --- a/docs/version-specific/supported-software/i/IGV.md +++ b/docs/version-specific/supported-software/i/IGV.md @@ -12,6 +12,7 @@ version | versionsuffix | toolchain --------|---------------|---------- ``2.12.3`` | ``-Java-11`` | ``system`` ``2.16.0`` | ``-Java-11`` | ``system`` +``2.17.4`` | ``-Java-17`` | ``system`` ``2.3.68`` | ``-Java-1.7.0_80`` | ``system`` ``2.3.80`` | ``-Java-1.7.0_80`` | ``system`` ``2.5.0`` | ``-Java-11`` | ``system`` diff --git a/docs/version-specific/supported-software/i/IMAGE.md b/docs/version-specific/supported-software/i/IMAGE.md new file mode 100644 index 000000000..968e51667 --- /dev/null +++ b/docs/version-specific/supported-software/i/IMAGE.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# IMAGE + +IMAGE (Motif Activity and Gene Expression changes of transcription factors) is software for integrated analysis of motif activity and gene expression changes of transcription factors. IMAGE makes prediction of causal transcription factors based on transcriptome profiling and genome-wide maps of enhancer activity. + +*homepage*: + +version | toolchain +--------|---------- +``1.1`` | ``foss/2022b`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/i/IQ-TREE.md b/docs/version-specific/supported-software/i/IQ-TREE.md index b6be6b17a..16e90e89a 100644 --- a/docs/version-specific/supported-software/i/IQ-TREE.md +++ b/docs/version-specific/supported-software/i/IQ-TREE.md @@ -23,6 +23,7 @@ version | versionsuffix | toolchain ``2.2.2.6`` | | ``gompi/2022a`` ``2.2.2.6`` | | ``gompi/2022b`` ``2.2.2.7`` | | ``gompi/2023a`` +``2.3.5`` | | ``gompi/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/i/ITK.md b/docs/version-specific/supported-software/i/ITK.md index 2dfbf7ada..2a619f5dc 100644 --- a/docs/version-specific/supported-software/i/ITK.md +++ b/docs/version-specific/supported-software/i/ITK.md @@ -30,6 +30,7 @@ version | versionsuffix | toolchain ``5.2.1`` | | ``foss/2021b`` ``5.2.1`` | | ``foss/2022a`` ``5.2.1`` | | ``fosscuda/2020b`` +``5.3.0`` | | ``foss/2022b`` ``5.3.0`` | | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/i/ImageMagick.md b/docs/version-specific/supported-software/i/ImageMagick.md index 5eb38a6d5..e4f7c20d4 100644 --- a/docs/version-specific/supported-software/i/ImageMagick.md +++ b/docs/version-specific/supported-software/i/ImageMagick.md @@ -35,6 +35,7 @@ version | versionsuffix | toolchain ``7.1.0-4`` | | ``GCCcore/11.2.0`` ``7.1.0-53`` | | ``GCCcore/12.2.0`` ``7.1.1-15`` | | ``GCCcore/12.3.0`` +``7.1.1-34`` | | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/i/Imath.md b/docs/version-specific/supported-software/i/Imath.md index 9d84e9629..0e683c941 100644 --- a/docs/version-specific/supported-software/i/Imath.md +++ b/docs/version-specific/supported-software/i/Imath.md @@ -10,6 +10,7 @@ Imath is a C++ and python library of 2D and 3D vector, matrix, and math operatio version | toolchain --------|---------- +``3.1.11`` | ``GCCcore/13.3.0`` ``3.1.5`` | ``GCCcore/11.3.0`` ``3.1.6`` | ``GCCcore/12.2.0`` ``3.1.7`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/i/IsoQuant.md b/docs/version-specific/supported-software/i/IsoQuant.md index 1032eb156..e73221c98 100644 --- a/docs/version-specific/supported-software/i/IsoQuant.md +++ b/docs/version-specific/supported-software/i/IsoQuant.md @@ -11,6 +11,7 @@ IsoQuant is a tool for the genome-based analysis of long RNA reads, such as Pac version | toolchain --------|---------- ``3.3.0`` | ``foss/2022b`` +``3.5.0`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/i/igraph.md b/docs/version-specific/supported-software/i/igraph.md index 00d665e4d..c14c6d1ab 100644 --- a/docs/version-specific/supported-software/i/igraph.md +++ b/docs/version-specific/supported-software/i/igraph.md @@ -11,6 +11,7 @@ igraph is a collection of network analysis tools with the emphasis on efficiency version | toolchain --------|---------- ``0.10.10`` | ``foss/2023a`` +``0.10.12`` | ``foss/2023b`` ``0.10.3`` | ``foss/2022a`` ``0.10.6`` | ``foss/2022b`` ``0.7.1`` | ``foss/2018b`` diff --git a/docs/version-specific/supported-software/i/iimpi.md b/docs/version-specific/supported-software/i/iimpi.md index cbad95f47..8ffff367e 100644 --- a/docs/version-specific/supported-software/i/iimpi.md +++ b/docs/version-specific/supported-software/i/iimpi.md @@ -55,6 +55,7 @@ version | versionsuffix | toolchain ``2023.11`` | | ``system`` ``2023a`` | | ``system`` ``2023b`` | | ``system`` +``2024a`` | | ``system`` ``8.1.5`` | ``-GCC-4.9.3-2.25`` | ``system`` ``system`` | ``-GCC-system-2.29`` | ``system`` diff --git a/docs/version-specific/supported-software/i/ilastik-napari.md b/docs/version-specific/supported-software/i/ilastik-napari.md new file mode 100644 index 000000000..101ed6ea6 --- /dev/null +++ b/docs/version-specific/supported-software/i/ilastik-napari.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# ilastik-napari + +Napari plugin for interactive pixel classification. + +*homepage*: + +version | toolchain +--------|---------- +``0.2.4`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/i/imageio.md b/docs/version-specific/supported-software/i/imageio.md index 140cea17f..f95a73c75 100644 --- a/docs/version-specific/supported-software/i/imageio.md +++ b/docs/version-specific/supported-software/i/imageio.md @@ -16,6 +16,7 @@ version | versionsuffix | toolchain ``2.3.0`` | ``-Python-3.6.4`` | ``intel/2018a`` ``2.31.1`` | | ``foss/2022b`` ``2.33.1`` | | ``gfbf/2023a`` +``2.34.1`` | | ``gfbf/2023b`` ``2.5.0`` | | ``foss/2019a`` ``2.9.0`` | ``-Python-3.7.4`` | ``foss/2019b`` ``2.9.0`` | | ``foss/2020b`` diff --git a/docs/version-specific/supported-software/i/imbalanced-learn.md b/docs/version-specific/supported-software/i/imbalanced-learn.md index 260953a7e..ad78d743c 100644 --- a/docs/version-specific/supported-software/i/imbalanced-learn.md +++ b/docs/version-specific/supported-software/i/imbalanced-learn.md @@ -11,6 +11,7 @@ imbalanced-learn is a Python package offering a number of re-sampling techniques version | versionsuffix | toolchain --------|---------------|---------- ``0.10.1`` | | ``foss/2022a`` +``0.12.3`` | | ``gfbf/2023a`` ``0.2.1`` | ``-Python-2.7.12`` | ``intel/2016b`` ``0.2.1`` | ``-Python-3.5.2`` | ``intel/2016b`` ``0.3.3`` | ``-Python-3.6.4`` | ``foss/2018a`` diff --git a/docs/version-specific/supported-software/i/imkl-FFTW.md b/docs/version-specific/supported-software/i/imkl-FFTW.md index 9bc465fbf..db42ce2cb 100644 --- a/docs/version-specific/supported-software/i/imkl-FFTW.md +++ b/docs/version-specific/supported-software/i/imkl-FFTW.md @@ -24,6 +24,7 @@ version | toolchain ``2023.2.0`` | ``iimpi/2023.07`` ``2023.2.0`` | ``iimpi/2023b`` ``2024.0.0`` | ``iimpi/2023.11`` +``2024.2.0`` | ``iimpi/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/i/imkl.md b/docs/version-specific/supported-software/i/imkl.md index ea4deda7f..8adda3c3b 100644 --- a/docs/version-specific/supported-software/i/imkl.md +++ b/docs/version-specific/supported-software/i/imkl.md @@ -93,6 +93,7 @@ version | versionsuffix | toolchain ``2023.1.0`` | | ``system`` ``2023.2.0`` | | ``system`` ``2024.0.0`` | | ``system`` +``2024.2.0`` | | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/i/impi.md b/docs/version-specific/supported-software/i/impi.md index caa9cb15b..45aa9f44f 100644 --- a/docs/version-specific/supported-software/i/impi.md +++ b/docs/version-specific/supported-software/i/impi.md @@ -45,6 +45,7 @@ version | versionsuffix | toolchain ``2021.1.1`` | | ``intel-compilers/2021.1.2`` ``2021.10.0`` | | ``intel-compilers/2023.2.1`` ``2021.11.0`` | | ``intel-compilers/2024.0.0`` +``2021.13.0`` | | ``intel-compilers/2024.2.0`` ``2021.2.0`` | | ``intel-compilers/2021.2.0`` ``2021.3.0`` | | ``intel-compilers/2021.3.0`` ``2021.4.0`` | | ``intel-compilers/2021.4.0`` diff --git a/docs/version-specific/supported-software/i/index.md b/docs/version-specific/supported-software/i/index.md index 81df5bdb0..71f810dbc 100644 --- a/docs/version-specific/supported-software/i/index.md +++ b/docs/version-specific/supported-software/i/index.md @@ -26,6 +26,7 @@ search: * [idemux](idemux.md) * [IDG](IDG.md) * [ieeg-cli](ieeg-cli.md) + * [IEntropy](IEntropy.md) * [ifort](ifort.md) * [IgBLAST](IgBLAST.md) * [IGMPlot](IGMPlot.md) @@ -40,8 +41,10 @@ search: * [iimpic](iimpic.md) * [IJulia](IJulia.md) * [ILAMB](ILAMB.md) + * [ilastik-napari](ilastik-napari.md) * [IMa2](IMa2.md) * [IMa2p](IMa2p.md) + * [IMAGE](IMAGE.md) * [imagecodecs](imagecodecs.md) * [imageio](imageio.md) * [ImageJ](ImageJ.md) diff --git a/docs/version-specific/supported-software/i/inferCNV.md b/docs/version-specific/supported-software/i/inferCNV.md index 1a07b1285..9c6ef63ab 100644 --- a/docs/version-specific/supported-software/i/inferCNV.md +++ b/docs/version-specific/supported-software/i/inferCNV.md @@ -15,6 +15,7 @@ version | versionsuffix | toolchain ``1.12.0`` | ``-R-4.2.1`` | ``foss/2022a`` ``1.14.2`` | ``-R-4.2.2`` | ``foss/2022b`` ``1.2.1`` | ``-Python-3.7.4`` | ``foss/2019b`` +``1.21.0`` | ``-R-4.3.2`` | ``foss/2023a`` ``1.3.3`` | ``-Python-3.8.2`` | ``foss/2020a`` ``1.3.3`` | | ``foss/2020b`` ``1.3.3`` | | ``foss/2021a`` diff --git a/docs/version-specific/supported-software/i/intel-compilers.md b/docs/version-specific/supported-software/i/intel-compilers.md index 2435eda7d..2b0b88c24 100644 --- a/docs/version-specific/supported-software/i/intel-compilers.md +++ b/docs/version-specific/supported-software/i/intel-compilers.md @@ -23,6 +23,7 @@ version | toolchain ``2023.1.0`` | ``system`` ``2023.2.1`` | ``system`` ``2024.0.0`` | ``system`` +``2024.2.0`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/i/intel.md b/docs/version-specific/supported-software/i/intel.md index 49dd42902..040dbd558 100644 --- a/docs/version-specific/supported-software/i/intel.md +++ b/docs/version-specific/supported-software/i/intel.md @@ -56,6 +56,7 @@ version | versionsuffix | toolchain ``2023.11`` | | ``system`` ``2023a`` | | ``system`` ``2023b`` | | ``system`` +``2024a`` | | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/i/intervaltree.md b/docs/version-specific/supported-software/i/intervaltree.md index c5404b0e0..5f1110754 100644 --- a/docs/version-specific/supported-software/i/intervaltree.md +++ b/docs/version-specific/supported-software/i/intervaltree.md @@ -14,6 +14,7 @@ version | toolchain ``0.1`` | ``GCCcore/10.3.0`` ``0.1`` | ``GCCcore/11.2.0`` ``0.1`` | ``GCCcore/11.3.0`` +``0.1`` | ``GCCcore/12.2.0`` ``0.1`` | ``GCCcore/12.3.0`` ``0.1`` | ``GCCcore/9.3.0`` diff --git a/docs/version-specific/supported-software/i/intltool.md b/docs/version-specific/supported-software/i/intltool.md index f698eb8a0..d67d2613a 100644 --- a/docs/version-specific/supported-software/i/intltool.md +++ b/docs/version-specific/supported-software/i/intltool.md @@ -17,6 +17,7 @@ version | versionsuffix | toolchain ``0.51.0`` | | ``GCCcore/12.2.0`` ``0.51.0`` | | ``GCCcore/12.3.0`` ``0.51.0`` | | ``GCCcore/13.2.0`` +``0.51.0`` | | ``GCCcore/13.3.0`` ``0.51.0`` | ``-Perl-5.24.0`` | ``GCCcore/4.9.3`` ``0.51.0`` | ``-Perl-5.24.0`` | ``GCCcore/5.4.0`` ``0.51.0`` | ``-Perl-5.24.1`` | ``GCCcore/6.3.0`` diff --git a/docs/version-specific/supported-software/index.md b/docs/version-specific/supported-software/index.md index 2faa7d997..b7f574138 100644 --- a/docs/version-specific/supported-software/index.md +++ b/docs/version-specific/supported-software/index.md @@ -6,7 +6,7 @@ search: *(quick links: [0](./0/index.md) - [a](./a/index.md) - [b](./b/index.md) - [c](./c/index.md) - [d](./d/index.md) - [e](./e/index.md) - [f](./f/index.md) - [g](./g/index.md) - [h](./h/index.md) - [i](./i/index.md) - [j](./j/index.md) - [k](./k/index.md) - [l](./l/index.md) - [m](./m/index.md) - [n](./n/index.md) - [o](./o/index.md) - [p](./p/index.md) - [q](./q/index.md) - [r](./r/index.md) - [s](./s/index.md) - [t](./t/index.md) - [u](./u/index.md) - [v](./v/index.md) - [w](./w/index.md) - [x](./x/index.md) - [y](./y/index.md) - [z](./z/index.md))* -EasyBuild supports 3552 different software packages (incl. toolchains, bundles): +EasyBuild supports 3656 different software packages (incl. toolchains, bundles): * [0](0/index.md) * [3d-dna](0/3d-dna.md) @@ -18,8 +18,10 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [ABRA2](a/ABRA2.md) * [ABRicate](a/ABRicate.md) * [Abseil](a/Abseil.md) + * [absl-py](a/absl-py.md) * [abTEM](a/abTEM.md) * [ABySS](a/ABySS.md) + * [accelerate](a/accelerate.md) * [ack](a/ack.md) * [ACTC](a/ACTC.md) * [ada](a/ada.md) @@ -33,6 +35,7 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [Advisor](a/Advisor.md) * [AEDT](a/AEDT.md) * [affinity](a/affinity.md) + * [affogato](a/affogato.md) * [AFNI](a/AFNI.md) * [AGAT](a/AGAT.md) * [AGeNT](a/AGeNT.md) @@ -105,6 +108,7 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [AOMP](a/AOMP.md) * [APBS](a/APBS.md) * [apex](a/apex.md) + * [APOST3D](a/APOST3D.md) * [APR](a/APR.md) * [APR-util](a/APR-util.md) * [AptaSUITE](a/AptaSUITE.md) @@ -211,6 +215,8 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [BayesAss3-SNPs](b/BayesAss3-SNPs.md) * [BayeScan](b/BayeScan.md) * [BayeScEnv](b/BayeScEnv.md) + * [bayesian-optimization](b/bayesian-optimization.md) + * [BayesOpt](b/BayesOpt.md) * [BayesPrism](b/BayesPrism.md) * [BayesTraits](b/BayesTraits.md) * [Bazel](b/Bazel.md) @@ -244,6 +250,7 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [BgeeCall](b/BgeeCall.md) * [BgeeDB](b/BgeeDB.md) * [bgen](b/bgen.md) + * [BGEN-enkre](b/BGEN-enkre.md) * [bgen-reader](b/bgen-reader.md) * [BiasAdjustCXX](b/BiasAdjustCXX.md) * [bibtexparser](b/bibtexparser.md) @@ -271,6 +278,7 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [Bismark](b/Bismark.md) * [Bison](b/Bison.md) * [bitarray](b/bitarray.md) + * [bitsandbytes](b/bitsandbytes.md) * [bitshuffle](b/bitshuffle.md) * [BLACS](b/BLACS.md) * [BLASR](b/BLASR.md) @@ -280,6 +288,7 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [BLAT](b/BLAT.md) * [Blender](b/Blender.md) * [BLIS](b/BLIS.md) + * [bliss](b/bliss.md) * [Blitz++](b/Blitz++.md) * [BlobTools](b/BlobTools.md) * [Block](b/Block.md) @@ -422,6 +431,7 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [CESM-deps](c/CESM-deps.md) * [CFDEMcoupling](c/CFDEMcoupling.md) * [cffi](c/cffi.md) + * [cfgrib](c/cfgrib.md) * [CFITSIO](c/CFITSIO.md) * [cftime](c/cftime.md) * [CGAL](c/CGAL.md) @@ -465,6 +475,7 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [Clang](c/Clang.md) * [Clang-AOMP](c/Clang-AOMP.md) * [Clang-Python-bindings](c/Clang-Python-bindings.md) + * [CLANS](c/CLANS.md) * [CLAPACK](c/CLAPACK.md) * [Clarabel.rs](c/Clarabel.rs.md) * [CLEAR](c/CLEAR.md) @@ -503,6 +514,7 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [Coin](c/Coin.md) * [CoinUtils](c/CoinUtils.md) * [ColabFold](c/ColabFold.md) + * [colorize](c/colorize.md) * [colossalai](c/colossalai.md) * [COMEBin](c/COMEBin.md) * [Commet](c/Commet.md) @@ -529,9 +541,12 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [core-counter](c/core-counter.md) * [Coreutils](c/Coreutils.md) * [corner](c/corner.md) + * [CORSIKA](c/CORSIKA.md) + * [COSTA](c/COSTA.md) * [CoSymLib](c/CoSymLib.md) * [coverage](c/coverage.md) * [cowsay](c/cowsay.md) + * [coxeter](c/coxeter.md) * [CP2K](c/CP2K.md) * [CPB](c/CPB.md) * [CPC2](c/CPC2.md) @@ -556,6 +571,7 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [CRF++](c/CRF++.md) * [CRISPR-DAV](c/CRISPR-DAV.md) * [CRISPResso2](c/CRISPResso2.md) + * [Critic2](c/Critic2.md) * [cromwell](c/cromwell.md) * [crossguid](c/crossguid.md) * [CrossMap](c/CrossMap.md) @@ -564,6 +580,7 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [Crumble](c/Crumble.md) * [cryoCARE](c/cryoCARE.md) * [cryoDRGN](c/cryoDRGN.md) + * [crypt4gh](c/crypt4gh.md) * [cryptography](c/cryptography.md) * [CryptoMiniSat](c/CryptoMiniSat.md) * [CrystFEL](c/CrystFEL.md) @@ -633,6 +650,7 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [DBCSR](d/DBCSR.md) * [DBD-mysql](d/DBD-mysql.md) * [DBG2OLC](d/DBG2OLC.md) + * [dblatex](d/dblatex.md) * [DBus](d/DBus.md) * [dbus-glib](d/dbus-glib.md) * [dclone](d/dclone.md) @@ -684,6 +702,7 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [DiCE-ML](d/DiCE-ML.md) * [dicom2nifti](d/dicom2nifti.md) * [DicomBrowser](d/DicomBrowser.md) + * [dictys](d/dictys.md) * [DiffBind](d/DiffBind.md) * [Diffutils](d/Diffutils.md) * [dijitso](d/dijitso.md) @@ -694,6 +713,7 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [DjVuLibre](d/DjVuLibre.md) * [DL_POLY_4](d/DL_POLY_4.md) * [DL_POLY_Classic](d/DL_POLY_Classic.md) + * [DL_POLY_Classic_GUI](d/DL_POLY_Classic_GUI.md) * [dlb](d/dlb.md) * [dlib](d/dlib.md) * [DLPack](d/DLPack.md) @@ -755,6 +775,7 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [ED2](e/ED2.md) * [EDirect](e/EDirect.md) * [edlib](e/edlib.md) + * [EGA-QuickView](e/EGA-QuickView.md) * [EggLib](e/EggLib.md) * [eggnog-mapper](e/eggnog-mapper.md) * [EGTtools](e/EGTtools.md) @@ -779,6 +800,9 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [EMBOSS](e/EMBOSS.md) * [Embree](e/Embree.md) * [emcee](e/emcee.md) + * [EMMAX](e/EMMAX.md) + * [empanada-dl](e/empanada-dl.md) + * [empanada-napari](e/empanada-napari.md) * [EMU](e/EMU.md) * [enaBrowserTool](e/enaBrowserTool.md) * [enchant](e/enchant.md) @@ -794,6 +818,7 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [EpiSCORE](e/EpiSCORE.md) * [eQuilibrator](e/eQuilibrator.md) * [EricScript](e/EricScript.md) + * [ESIpy](e/ESIpy.md) * [ESL-Bundle](e/ESL-Bundle.md) * [ESM-2](e/ESM-2.md) * [ESMF](e/ESMF.md) @@ -845,6 +870,7 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [FastaIndex](f/FastaIndex.md) * [FastANI](f/FastANI.md) * [Fastaq](f/Fastaq.md) + * [fastfilters](f/fastfilters.md) * [FastFold](f/FastFold.md) * [fastjet](f/fastjet.md) * [fastjet-contrib](f/fastjet-contrib.md) @@ -868,7 +894,6 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [fatslim](f/fatslim.md) * [fbm](f/fbm.md) * [FBPIC](f/FBPIC.md) - * [FCC](f/FCC.md) * [FCM](f/FCM.md) * [fdict](f/fdict.md) * [FDMNES](f/FDMNES.md) @@ -885,7 +910,6 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [FFC](f/FFC.md) * [FFLAS-FFPACK](f/FFLAS-FFPACK.md) * [FFmpeg](f/FFmpeg.md) - * [ffmpi](f/ffmpi.md) * [ffnet](f/ffnet.md) * [ffnvcodec](f/ffnvcodec.md) * [fftlib](f/fftlib.md) @@ -912,6 +936,7 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [Firefox](f/Firefox.md) * [FIRESTARTER](f/FIRESTARTER.md) * [FireWorks](f/FireWorks.md) + * [fish](f/fish.md) * [FIt-SNE](f/FIt-SNE.md) * [FIX](f/FIX.md) * [fixesproto](f/fixesproto.md) @@ -920,9 +945,11 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [flair-NLP](f/flair-NLP.md) * [FLANN](f/FLANN.md) * [FLASH](f/FLASH.md) + * [flash-attention](f/flash-attention.md) * [Flask](f/Flask.md) * [flatbuffers](f/flatbuffers.md) * [flatbuffers-python](f/flatbuffers-python.md) + * [Flax](f/Flax.md) * [FLEUR](f/FLEUR.md) * [flex](f/flex.md) * [Flexbar](f/Flexbar.md) @@ -946,6 +973,7 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [FoldX](f/FoldX.md) * [fontconfig](f/fontconfig.md) * [fontsproto](f/fontsproto.md) + * [fonttools](f/fonttools.md) * [forbear](f/forbear.md) * [FORD](f/FORD.md) * [foss](f/foss.md) @@ -979,12 +1007,12 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [FRUIT_processor](f/FRUIT_processor.md) * [FSL](f/FSL.md) * [FSLeyes](f/FSLeyes.md) + * [fsm-lite](f/fsm-lite.md) * [fsom](f/fsom.md) * [FSON](f/FSON.md) * [ftfy](f/ftfy.md) * [FTGL](f/FTGL.md) * [fugue](f/fugue.md) - * [Fujitsu](f/Fujitsu.md) * [fullrmc](f/fullrmc.md) * [fumi_tools](f/fumi_tools.md) * [funannotate](f/funannotate.md) @@ -1042,6 +1070,7 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [GDGraph](g/GDGraph.md) * [gdist](g/gdist.md) * [Gdk-Pixbuf](g/Gdk-Pixbuf.md) + * [GDMA](g/GDMA.md) * [GDRCopy](g/GDRCopy.md) * [Gdspy](g/Gdspy.md) * [Geant4](g/Geant4.md) @@ -1070,6 +1099,7 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [genozip](g/genozip.md) * [gensim](g/gensim.md) * [geocube](g/geocube.md) + * [GeoDict](g/GeoDict.md) * [geopandas](g/geopandas.md) * [geopy](g/geopy.md) * [georges](g/georges.md) @@ -1139,6 +1169,7 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [GMAP-GSNAP](g/GMAP-GSNAP.md) * [GMP](g/GMP.md) * [GMP-ECM](g/GMP-ECM.md) + * [gmpflf](g/gmpflf.md) * [gmpich](g/gmpich.md) * [gmpolf](g/gmpolf.md) * [gmpy2](g/gmpy2.md) @@ -1171,6 +1202,7 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [GPAW-setups](g/GPAW-setups.md) * [gperf](g/gperf.md) * [gperftools](g/gperftools.md) + * [GPflow](g/GPflow.md) * [gpustat](g/gpustat.md) * [GPy](g/GPy.md) * [GPyOpt](g/GPyOpt.md) @@ -1220,19 +1252,21 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [gsw](g/gsw.md) * [GTDB-Tk](g/GTDB-Tk.md) * [GTK+](g/GTK+.md) + * [gtk-doc](g/gtk-doc.md) * [GTK2](g/GTK2.md) * [GTK3](g/GTK3.md) * [GTK4](g/GTK4.md) * [GtkSourceView](g/GtkSourceView.md) * [GTOOL](g/GTOOL.md) * [GTS](g/GTS.md) - * [gubbins](g/gubbins.md) + * [Gubbins](g/Gubbins.md) * [guenomu](g/guenomu.md) * [GUIDANCE](g/GUIDANCE.md) * [Guile](g/Guile.md) * [GULP](g/GULP.md) * [Gurobi](g/Gurobi.md) * [GUSHR](g/GUSHR.md) + * [Gymnasium](g/Gymnasium.md) * [gzip](g/gzip.md) * [h](h/index.md) * [h4toh5](h/h4toh5.md) @@ -1270,6 +1304,7 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [help2man](h/help2man.md) * [HepMC](h/HepMC.md) * [HepMC3](h/HepMC3.md) + * [HERRO](h/HERRO.md) * [hevea](h/hevea.md) * [HF-Datasets](h/HF-Datasets.md) * [HH-suite](h/HH-suite.md) @@ -1343,6 +1378,7 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [idemux](i/idemux.md) * [IDG](i/IDG.md) * [ieeg-cli](i/ieeg-cli.md) + * [IEntropy](i/IEntropy.md) * [ifort](i/ifort.md) * [IgBLAST](i/IgBLAST.md) * [IGMPlot](i/IGMPlot.md) @@ -1357,8 +1393,10 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [iimpic](i/iimpic.md) * [IJulia](i/IJulia.md) * [ILAMB](i/ILAMB.md) + * [ilastik-napari](i/ilastik-napari.md) * [IMa2](i/IMa2.md) * [IMa2p](i/IMa2p.md) + * [IMAGE](i/IMAGE.md) * [imagecodecs](i/imagecodecs.md) * [imageio](i/imageio.md) * [ImageJ](i/ImageJ.md) @@ -1473,13 +1511,16 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [Judy](j/Judy.md) * [Julia](j/Julia.md) * [JUnit](j/JUnit.md) + * [junos-eznc](j/junos-eznc.md) * [Jupyter-bundle](j/Jupyter-bundle.md) + * [jupyter-collaboration](j/jupyter-collaboration.md) * [jupyter-contrib-nbextensions](j/jupyter-contrib-nbextensions.md) * [jupyter-matlab-proxy](j/jupyter-matlab-proxy.md) * [jupyter-resource-usage](j/jupyter-resource-usage.md) * [jupyter-rsession-proxy](j/jupyter-rsession-proxy.md) * [jupyter-server](j/jupyter-server.md) * [jupyter-server-proxy](j/jupyter-server-proxy.md) + * [jupyter-vscode-proxy](j/jupyter-vscode-proxy.md) * [JupyterHub](j/JupyterHub.md) * [JupyterLab](j/JupyterLab.md) * [jupyterlab-lmod](j/jupyterlab-lmod.md) @@ -1533,6 +1574,8 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [lancet](l/lancet.md) * [LangChain](l/LangChain.md) * [langchain-anthropic](l/langchain-anthropic.md) + * [langchain-mistralai](l/langchain-mistralai.md) + * [langchain-openai](l/langchain-openai.md) * [LAPACK](l/LAPACK.md) * [LASSO-Python](l/LASSO-Python.md) * [LAST](l/LAST.md) @@ -1758,6 +1801,8 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [LPeg](l/LPeg.md) * [LPJmL](l/LPJmL.md) * [lpsolve](l/lpsolve.md) + * [LRBinner](l/LRBinner.md) + * [lrcalc](l/lrcalc.md) * [lrslib](l/lrslib.md) * [LS-PrePost](l/LS-PrePost.md) * [LSD2](l/LSD2.md) @@ -1789,6 +1834,7 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [maeparser](m/maeparser.md) * [MAFFT](m/MAFFT.md) * [MAGeCK](m/MAGeCK.md) + * [MAGIC](m/MAGIC.md) * [magick](m/magick.md) * [Magics](m/Magics.md) * [magma](m/magma.md) @@ -1803,6 +1849,7 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [makeinfo](m/makeinfo.md) * [MAKER](m/MAKER.md) * [Mako](m/Mako.md) + * [mallard-ducktype](m/mallard-ducktype.md) * [Mamba](m/Mamba.md) * [mandrake](m/mandrake.md) * [mannkendall](m/mannkendall.md) @@ -1818,6 +1865,7 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [Mash](m/Mash.md) * [Mashtree](m/Mashtree.md) * [MaSuRCA](m/MaSuRCA.md) + * [MATES](m/MATES.md) * [Mathematica](m/Mathematica.md) * [MathGL](m/MathGL.md) * [MATIO](m/MATIO.md) @@ -1839,8 +1887,10 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [MbedTLS](m/MbedTLS.md) * [MBROLA](m/MBROLA.md) * [mbuffer](m/mbuffer.md) + * [MBX](m/MBX.md) * [mc](m/mc.md) * [MCL](m/MCL.md) + * [mcqd](m/mcqd.md) * [MCR](m/MCR.md) * [mctc-lib](m/mctc-lib.md) * [mcu](m/mcu.md) @@ -1877,6 +1927,7 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [Mesa-demos](m/Mesa-demos.md) * [meshalyzer](m/meshalyzer.md) * [meshio](m/meshio.md) + * [MeshLab](m/MeshLab.md) * [meshtool](m/meshtool.md) * [Meson](m/Meson.md) * [meson-python](m/meson-python.md) @@ -1896,6 +1947,7 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [MetaPhlAn2](m/MetaPhlAn2.md) * [metaWRAP](m/metaWRAP.md) * [Metaxa2](m/Metaxa2.md) + * [meteogrid](m/meteogrid.md) * [methylartist](m/methylartist.md) * [MethylDackel](m/MethylDackel.md) * [methylpy](m/methylpy.md) @@ -1906,6 +1958,7 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [mhcflurry](m/mhcflurry.md) * [mhcnuggets](m/mhcnuggets.md) * [MICOM](m/MICOM.md) + * [micro-sam](m/micro-sam.md) * [MicrobeAnnotator](m/MicrobeAnnotator.md) * [microctools](m/microctools.md) * [MiGEC](m/MiGEC.md) @@ -1926,6 +1979,7 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [Minimac4](m/Minimac4.md) * [minimap2](m/minimap2.md) * [Minipolish](m/Minipolish.md) + * [miniprot](m/miniprot.md) * [MiniSat](m/MiniSat.md) * [minizip](m/minizip.md) * [MINPACK](m/MINPACK.md) @@ -2071,6 +2125,7 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [NanopolishComp](n/NanopolishComp.md) * [NanoStat](n/NanoStat.md) * [napari](n/napari.md) + * [napari-denoiseg](n/napari-denoiseg.md) * [NASM](n/NASM.md) * [nauty](n/nauty.md) * [nbclassic](n/nbclassic.md) @@ -2090,10 +2145,12 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [ncview](n/ncview.md) * [nd2reader](n/nd2reader.md) * [ne](n/ne.md) + * [NECAT](n/NECAT.md) * [NECI](n/NECI.md) * [NEdit](n/NEdit.md) * [Nek5000](n/Nek5000.md) * [Nektar++](n/Nektar++.md) + * [nellie](n/nellie.md) * [neon](n/neon.md) * [neptune-client](n/neptune-client.md) * [Net-core](n/Net-core.md) @@ -2118,6 +2175,7 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [NewHybrids](n/NewHybrids.md) * [Nextflow](n/Nextflow.md) * [NextGenMap](n/NextGenMap.md) + * [NextPolish](n/NextPolish.md) * [NEXUS-CL](n/NEXUS-CL.md) * [nf-core](n/nf-core.md) * [nf-core-mag](n/nf-core-mag.md) @@ -2136,6 +2194,7 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [nichenetr](n/nichenetr.md) * [NIfTI](n/NIfTI.md) * [nifti2dicom](n/nifti2dicom.md) + * [nifty](n/nifty.md) * [Nilearn](n/Nilearn.md) * [Nim](n/Nim.md) * [NIMBLE](n/NIMBLE.md) @@ -2196,6 +2255,7 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [olaFlow](o/olaFlow.md) * [olego](o/olego.md) * [OMA](o/OMA.md) + * [ome-types](o/ome-types.md) * [OmegaFold](o/OmegaFold.md) * [OMERO.insight](o/OMERO.insight.md) * [OMERO.py](o/OMERO.py.md) @@ -2210,6 +2270,7 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [OPARI2](o/OPARI2.md) * [Open-Data-Cube-Core](o/Open-Data-Cube-Core.md) * [OpenAI-Gym](o/OpenAI-Gym.md) + * [openai-python](o/openai-python.md) * [OpenBabel](o/OpenBabel.md) * [OpenBLAS](o/OpenBLAS.md) * [openCARP](o/openCARP.md) @@ -2224,6 +2285,7 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [OpenFOAM-Extend](o/OpenFOAM-Extend.md) * [OpenFold](o/OpenFold.md) * [OpenForceField](o/OpenForceField.md) + * [OpenForceField-Toolkit](o/OpenForceField-Toolkit.md) * [OpenImageIO](o/OpenImageIO.md) * [OpenJPEG](o/OpenJPEG.md) * [OpenKIM-API](o/OpenKIM-API.md) @@ -2259,6 +2321,7 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [ORCA](o/ORCA.md) * [ORFfinder](o/ORFfinder.md) * [OrfM](o/OrfM.md) + * [orjson](o/orjson.md) * [orthAgogue](o/orthAgogue.md) * [OrthoFinder](o/OrthoFinder.md) * [OrthoMCL](o/OrthoMCL.md) @@ -2342,6 +2405,7 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [PDT](p/PDT.md) * [peakdetect](p/peakdetect.md) * [PEAR](p/PEAR.md) + * [PEcAn](p/PEcAn.md) * [PennCNV](p/PennCNV.md) * [PEPT](p/PEPT.md) * [Percolator](p/Percolator.md) @@ -2473,6 +2537,7 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [PREQUAL](p/PREQUAL.md) * [preseq](p/preseq.md) * [presto](p/presto.md) + * [PretextMap](p/PretextMap.md) * [pretty-yaml](p/pretty-yaml.md) * [primecount](p/primecount.md) * [primecountpy](p/primecountpy.md) @@ -2535,6 +2600,7 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [PyAPS3](p/PyAPS3.md) * [PyAV](p/PyAV.md) * [pybedtools](p/pybedtools.md) + * [PyBEL](p/PyBEL.md) * [PyBerny](p/PyBerny.md) * [pyBigWig](p/pyBigWig.md) * [pybind11](p/pybind11.md) @@ -2605,6 +2671,7 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [pymatgen](p/pymatgen.md) * [pymatgen-db](p/pymatgen-db.md) * [pymbar](p/pymbar.md) + * [pyMBE](p/pyMBE.md) * [PyMC](p/PyMC.md) * [PyMC3](p/PyMC3.md) * [pymca](p/pymca.md) @@ -2655,6 +2722,7 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [pyspoa](p/pyspoa.md) * [pysqlite](p/pysqlite.md) * [PyStan](p/PyStan.md) + * [pystencils](p/pystencils.md) * [pysteps](p/pysteps.md) * [pystran](p/pystran.md) * [PyTables](p/PyTables.md) @@ -2671,10 +2739,12 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [pythermalcomfort](p/pythermalcomfort.md) * [PYTHIA](p/PYTHIA.md) * [Python](p/Python.md) + * [python-blosc](p/python-blosc.md) * [Python-bundle](p/Python-bundle.md) * [Python-bundle-PyPI](p/Python-bundle-PyPI.md) * [python-casacore](p/python-casacore.md) * [python-docx](p/python-docx.md) + * [python-elf](p/python-elf.md) * [python-hl7](p/python-hl7.md) * [python-igraph](p/python-igraph.md) * [python-irodsclient](p/python-irodsclient.md) @@ -2774,6 +2844,7 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [rampart](r/rampart.md) * [randfold](r/randfold.md) * [randrproto](r/randrproto.md) + * [rankwidth](r/rankwidth.md) * [rapidcsv](r/rapidcsv.md) * [RapidJSON](r/RapidJSON.md) * [rapidNJ](r/rapidNJ.md) @@ -2782,6 +2853,7 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [Raptor](r/Raptor.md) * [Rascaf](r/Rascaf.md) * [RASPA2](r/RASPA2.md) + * [Rasqal](r/Rasqal.md) * [rasterio](r/rasterio.md) * [rasterstats](r/rasterstats.md) * [Ratatosk](r/Ratatosk.md) @@ -2809,8 +2881,10 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [Red](r/Red.md) * [Redis](r/Redis.md) * [redis-py](r/redis-py.md) + * [Redland](r/Redland.md) * [Redundans](r/Redundans.md) * [ReFrame](r/ReFrame.md) + * [Regenie](r/Regenie.md) * [regionmask](r/regionmask.md) * [RegTools](r/RegTools.md) * [Relate](r/Relate.md) @@ -2850,6 +2924,7 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [RLCard](r/RLCard.md) * [rmarkdown](r/rmarkdown.md) * [Rmath](r/Rmath.md) + * [rMATS-long](r/rMATS-long.md) * [rMATS-turbo](r/rMATS-turbo.md) * [RMBlast](r/RMBlast.md) * [RNA-Bloom](r/RNA-Bloom.md) @@ -2901,6 +2976,7 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [safestringlib](s/safestringlib.md) * [Safetensors](s/Safetensors.md) * [SAGE](s/SAGE.md) + * [Sagemath](s/Sagemath.md) * [Sailfish](s/Sailfish.md) * [SALib](s/SALib.md) * [Salmon](s/Salmon.md) @@ -2927,8 +3003,11 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [scanpy](s/scanpy.md) * [scArches](s/scArches.md) * [scCODA](s/scCODA.md) + * [scCustomize](s/scCustomize.md) * [sceasy](s/sceasy.md) * [SCENIC](s/SCENIC.md) + * [SCENICplus](s/SCENICplus.md) + * [scFEA](s/scFEA.md) * [scGeneFit](s/scGeneFit.md) * [SCGid](s/SCGid.md) * [scGSVA](s/scGSVA.md) @@ -2981,6 +3060,7 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [SDL2_ttf](s/SDL2_ttf.md) * [SDL_image](s/SDL_image.md) * [SDSL](s/SDSL.md) + * [sdsl-lite](s/sdsl-lite.md) * [Seaborn](s/Seaborn.md) * [SEACells](s/SEACells.md) * [SearchGUI](s/SearchGUI.md) @@ -3025,6 +3105,7 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [SHAPEIT](s/SHAPEIT.md) * [SHAPEIT4](s/SHAPEIT4.md) * [Shapely](s/Shapely.md) + * [SharedMeatAxe](s/SharedMeatAxe.md) * [sharutils](s/sharutils.md) * [Shasta](s/Shasta.md) * [ShengBTE](s/ShengBTE.md) @@ -3052,15 +3133,19 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [simpy](s/simpy.md) * [Simstrat](s/Simstrat.md) * [SimVascular](s/SimVascular.md) + * [Single-cell-python-bundle](s/Single-cell-python-bundle.md) * [SingleM](s/SingleM.md) * [Singular](s/Singular.md) * [sinto](s/sinto.md) * [SiNVICT](s/SiNVICT.md) * [SIONlib](s/SIONlib.md) * [SIP](s/SIP.md) + * [SIRIUS](s/SIRIUS.md) + * [sirocco](s/sirocco.md) * [siscone](s/siscone.md) * [SISSO](s/SISSO.md) * [SISSO++](s/SISSO++.md) + * [SKA2](s/SKA2.md) * [SKESA](s/SKESA.md) * [sketchmap](s/sketchmap.md) * [skewer](s/skewer.md) @@ -3133,12 +3218,14 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [speech_tools](s/speech_tools.md) * [SPEI](s/SPEI.md) * [spektral](s/spektral.md) + * [SpFFT](s/SpFFT.md) * [spglib](s/spglib.md) * [spglib-python](s/spglib-python.md) * [Sphinx](s/Sphinx.md) * [Sphinx-RTD-Theme](s/Sphinx-RTD-Theme.md) * [SpiceyPy](s/SpiceyPy.md) * [SpiecEasi](s/SpiecEasi.md) + * [spla](s/spla.md) * [SplAdder](s/SplAdder.md) * [SPLASH](s/SPLASH.md) * [SpliceMap](s/SpliceMap.md) @@ -3162,6 +3249,7 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [SSN](s/SSN.md) * [SSPACE_Basic](s/SSPACE_Basic.md) * [SSW](s/SSW.md) + * [Stable-Baselines3](s/Stable-Baselines3.md) * [STACEY](s/STACEY.md) * [Stack](s/Stack.md) * [Stacks](s/Stacks.md) @@ -3192,6 +3280,7 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [STRUMPACK](s/STRUMPACK.md) * [suave](s/suave.md) * [SuAVE-biomat](s/SuAVE-biomat.md) + * [submitit](s/submitit.md) * [Subread](s/Subread.md) * [subset-bam](s/subset-bam.md) * [subunit](s/subunit.md) @@ -3212,6 +3301,7 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [SVclone](s/SVclone.md) * [SVDetect](s/SVDetect.md) * [SVDquest](s/SVDquest.md) + * [SVDSS2](s/SVDSS2.md) * [SVG](s/SVG.md) * [SVIM](s/SVIM.md) * [svist4get](s/svist4get.md) @@ -3255,6 +3345,7 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [Tcl](t/Tcl.md) * [TCLAP](t/TCLAP.md) * [tcsh](t/tcsh.md) + * [tdlib](t/tdlib.md) * [tecplot360ex](t/tecplot360ex.md) * [TELEMAC-MASCARET](t/TELEMAC-MASCARET.md) * [Telescope](t/Telescope.md) @@ -3314,6 +3405,7 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [TOPAS](t/TOPAS.md) * [topaz](t/topaz.md) * [TopHat](t/TopHat.md) + * [torch-em](t/torch-em.md) * [torchaudio](t/torchaudio.md) * [torchdata](t/torchdata.md) * [torchinfo](t/torchinfo.md) @@ -3383,9 +3475,11 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [UMI-tools](u/UMI-tools.md) * [umi4cPackage](u/umi4cPackage.md) * [umis](u/umis.md) + * [Umpire](u/Umpire.md) * [UNAFold](u/UNAFold.md) * [uncertainties](u/uncertainties.md) * [uncertainty-calibration](u/uncertainty-calibration.md) + * [Uni-Core](u/Uni-Core.md) * [unicore-uftp](u/unicore-uftp.md) * [Unicycler](u/Unicycler.md) * [Unidecode](u/Unidecode.md) @@ -3433,6 +3527,7 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [VERSE](v/VERSE.md) * [VESTA](v/VESTA.md) * [ViennaRNA](v/ViennaRNA.md) + * [vigra](v/vigra.md) * [Vim](v/Vim.md) * [VirSorter](v/VirSorter.md) * [VirSorter2](v/VirSorter2.md) @@ -3440,6 +3535,7 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [VirtualGL](v/VirtualGL.md) * [Virtuoso-opensource](v/Virtuoso-opensource.md) * [visdom](v/visdom.md) + * [Visit](v/Visit.md) * [vispr](v/vispr.md) * [VisPy](v/VisPy.md) * [vitessce-python](v/vitessce-python.md) @@ -3473,6 +3569,7 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [wcwidth](w/wcwidth.md) * [webin-cli](w/webin-cli.md) * [WebKitGTK+](w/WebKitGTK+.md) + * [weblogo](w/weblogo.md) * [WebSocket++](w/WebSocket++.md) * [WEKA](w/WEKA.md) * [WFA2](w/WFA2.md) @@ -3492,6 +3589,7 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [worker](w/worker.md) * [wpebackend-fdo](w/wpebackend-fdo.md) * [WPS](w/WPS.md) + * [wradlib](w/wradlib.md) * [wrapt](w/wrapt.md) * [WRF](w/WRF.md) * [WRF-Fire](w/WRF-Fire.md) @@ -3549,6 +3647,7 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [XSD](x/XSD.md) * [XTandem](x/XTandem.md) * [xtb](x/xtb.md) + * [xtb-IFF](x/xtb-IFF.md) * [xtensor](x/xtensor.md) * [xtrans](x/xtrans.md) * [Xvfb](x/Xvfb.md) @@ -3565,11 +3664,15 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [YAPS](y/YAPS.md) * [Yasm](y/Yasm.md) * [YAXT](y/YAXT.md) + * [yell](y/yell.md) + * [yelp-tools](y/yelp-tools.md) + * [yelp-xsl](y/yelp-xsl.md) * [Yices](y/Yices.md) * [YODA](y/YODA.md) * [yt](y/yt.md) * [z](z/index.md) * [Z3](z/Z3.md) + * [z5py](z/z5py.md) * [zarr](z/zarr.md) * [Zeo++](z/Zeo++.md) * [ZeroMQ](z/ZeroMQ.md) @@ -3582,6 +3685,7 @@ EasyBuild supports 3552 different software packages (incl. toolchains, bundles): * [zlib](z/zlib.md) * [zlib-ng](z/zlib-ng.md) * [zlibbioc](z/zlibbioc.md) + * [Zoltan](z/Zoltan.md) * [Zopfli](z/Zopfli.md) * [ZPAQ](z/ZPAQ.md) * [zsh](z/zsh.md) diff --git a/docs/version-specific/supported-software/j/JsonCpp.md b/docs/version-specific/supported-software/j/JsonCpp.md index 0731c0ba5..7a76df51b 100644 --- a/docs/version-specific/supported-software/j/JsonCpp.md +++ b/docs/version-specific/supported-software/j/JsonCpp.md @@ -19,6 +19,8 @@ version | toolchain ``1.9.5`` | ``GCCcore/11.3.0`` ``1.9.5`` | ``GCCcore/12.2.0`` ``1.9.5`` | ``GCCcore/12.3.0`` +``1.9.5`` | ``GCCcore/13.2.0`` +``1.9.5`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/j/Judy.md b/docs/version-specific/supported-software/j/Judy.md index 59e2731ce..0eb3fd5a2 100644 --- a/docs/version-specific/supported-software/j/Judy.md +++ b/docs/version-specific/supported-software/j/Judy.md @@ -15,6 +15,7 @@ version | toolchain ``1.0.5`` | ``GCCcore/11.2.0`` ``1.0.5`` | ``GCCcore/11.3.0`` ``1.0.5`` | ``GCCcore/12.2.0`` +``1.0.5`` | ``GCCcore/12.3.0`` ``1.0.5`` | ``GCCcore/8.2.0`` ``1.0.5`` | ``GCCcore/8.3.0`` diff --git a/docs/version-specific/supported-software/j/Julia.md b/docs/version-specific/supported-software/j/Julia.md index 02a3a0449..56f0f67c2 100644 --- a/docs/version-specific/supported-software/j/Julia.md +++ b/docs/version-specific/supported-software/j/Julia.md @@ -12,6 +12,7 @@ version | versionsuffix | toolchain --------|---------------|---------- ``1.1.1`` | ``-linux-x86_64`` | ``system`` ``1.10.0`` | ``-linux-x86_64`` | ``system`` +``1.10.4`` | ``-linux-x86_64`` | ``system`` ``1.2.0`` | ``-linux-x86_64`` | ``system`` ``1.3.1`` | ``-linux-x86_64`` | ``system`` ``1.4.0`` | ``-linux-x86_64`` | ``system`` diff --git a/docs/version-specific/supported-software/j/index.md b/docs/version-specific/supported-software/j/index.md index 27a2e1a44..a84fcbe64 100644 --- a/docs/version-specific/supported-software/j/index.md +++ b/docs/version-specific/supported-software/j/index.md @@ -38,13 +38,16 @@ search: * [Judy](Judy.md) * [Julia](Julia.md) * [JUnit](JUnit.md) + * [junos-eznc](junos-eznc.md) * [Jupyter-bundle](Jupyter-bundle.md) + * [jupyter-collaboration](jupyter-collaboration.md) * [jupyter-contrib-nbextensions](jupyter-contrib-nbextensions.md) * [jupyter-matlab-proxy](jupyter-matlab-proxy.md) * [jupyter-resource-usage](jupyter-resource-usage.md) * [jupyter-rsession-proxy](jupyter-rsession-proxy.md) * [jupyter-server](jupyter-server.md) * [jupyter-server-proxy](jupyter-server-proxy.md) + * [jupyter-vscode-proxy](jupyter-vscode-proxy.md) * [JupyterHub](JupyterHub.md) * [JupyterLab](JupyterLab.md) * [jupyterlab-lmod](jupyterlab-lmod.md) diff --git a/docs/version-specific/supported-software/j/jax.md b/docs/version-specific/supported-software/j/jax.md index 287b98779..db275fd43 100644 --- a/docs/version-specific/supported-software/j/jax.md +++ b/docs/version-specific/supported-software/j/jax.md @@ -22,6 +22,8 @@ version | versionsuffix | toolchain ``0.3.25`` | | ``foss/2022a`` ``0.3.9`` | ``-CUDA-11.3.1`` | ``foss/2021a`` ``0.3.9`` | | ``foss/2021a`` +``0.4.25`` | ``-CUDA-12.1.1`` | ``gfbf/2023a`` +``0.4.25`` | | ``gfbf/2023a`` ``0.4.4`` | ``-CUDA-11.7.0`` | ``foss/2022a`` ``0.4.4`` | | ``foss/2022a`` diff --git a/docs/version-specific/supported-software/j/jemalloc.md b/docs/version-specific/supported-software/j/jemalloc.md index 45b4ab412..7f1559fe7 100644 --- a/docs/version-specific/supported-software/j/jemalloc.md +++ b/docs/version-specific/supported-software/j/jemalloc.md @@ -27,6 +27,7 @@ version | toolchain ``5.3.0`` | ``GCCcore/11.3.0`` ``5.3.0`` | ``GCCcore/12.2.0`` ``5.3.0`` | ``GCCcore/12.3.0`` +``5.3.0`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/j/json-c.md b/docs/version-specific/supported-software/j/json-c.md index a96ae5f5f..79072868f 100644 --- a/docs/version-specific/supported-software/j/json-c.md +++ b/docs/version-specific/supported-software/j/json-c.md @@ -17,6 +17,7 @@ version | toolchain ``0.16`` | ``GCCcore/12.2.0`` ``0.16`` | ``GCCcore/12.3.0`` ``0.17`` | ``GCCcore/13.2.0`` +``0.17`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/j/json-fortran.md b/docs/version-specific/supported-software/j/json-fortran.md index afa9672e7..82461db70 100644 --- a/docs/version-specific/supported-software/j/json-fortran.md +++ b/docs/version-specific/supported-software/j/json-fortran.md @@ -19,6 +19,8 @@ version | toolchain ``8.3.0`` | ``intel-compilers/2022.0.1`` ``8.3.0`` | ``intel-compilers/2022.1.0`` ``8.3.0`` | ``intel-compilers/2022.2.1`` +``8.5.2`` | ``GCC/13.2.0`` +``8.5.2`` | ``intel-compilers/2023.2.1`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/j/junos-eznc.md b/docs/version-specific/supported-software/j/junos-eznc.md new file mode 100644 index 000000000..9a9ee01f3 --- /dev/null +++ b/docs/version-specific/supported-software/j/junos-eznc.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# junos-eznc + +Python library for Junos automation. + +*homepage*: + +version | toolchain +--------|---------- +``2.7.1`` | ``GCCcore/12.3.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/j/jupyter-collaboration.md b/docs/version-specific/supported-software/j/jupyter-collaboration.md new file mode 100644 index 000000000..990462db0 --- /dev/null +++ b/docs/version-specific/supported-software/j/jupyter-collaboration.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# jupyter-collaboration + +JupyterLab Real-Time Collaboration is a Jupyter Server Extension and JupyterLab extensions providing support for Y documents and adding collaboration UI elements in JupyterLab. + +*homepage*: + +version | toolchain +--------|---------- +``2.1.1`` | ``GCCcore/13.2.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/j/jupyter-vscode-proxy.md b/docs/version-specific/supported-software/j/jupyter-vscode-proxy.md new file mode 100644 index 000000000..d25ea1061 --- /dev/null +++ b/docs/version-specific/supported-software/j/jupyter-vscode-proxy.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# jupyter-vscode-proxy + +VS Code extension for Jupyter + +*homepage*: + +version | toolchain +--------|---------- +``0.6`` | ``GCCcore/12.3.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/k/Kaleido.md b/docs/version-specific/supported-software/k/Kaleido.md index 7c66e4f5c..a2a8bbcb8 100644 --- a/docs/version-specific/supported-software/k/Kaleido.md +++ b/docs/version-specific/supported-software/k/Kaleido.md @@ -14,6 +14,7 @@ version | toolchain ``0.2.1`` | ``GCCcore/10.3.0`` ``0.2.1`` | ``GCCcore/11.3.0`` ``0.2.1`` | ``GCCcore/12.2.0`` +``0.2.1`` | ``GCCcore/12.3.0`` ``0.2.1`` | ``GCCcore/13.2.0`` diff --git a/docs/version-specific/supported-software/k/Kent_tools.md b/docs/version-specific/supported-software/k/Kent_tools.md index 53d9b5311..94f593909 100644 --- a/docs/version-specific/supported-software/k/Kent_tools.md +++ b/docs/version-specific/supported-software/k/Kent_tools.md @@ -20,6 +20,8 @@ version | versionsuffix | toolchain ``422`` | | ``GCC/11.2.0`` ``442`` | | ``GCC/11.3.0`` ``457`` | | ``GCC/12.2.0`` +``461`` | | ``GCC/12.2.0`` +``468`` | | ``GCC/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/k/kineto.md b/docs/version-specific/supported-software/k/kineto.md index 1f84c1919..99e006562 100644 --- a/docs/version-specific/supported-software/k/kineto.md +++ b/docs/version-specific/supported-software/k/kineto.md @@ -11,6 +11,7 @@ A CPU+GPU Profiling library that provides access to timeline traces and hardware version | toolchain --------|---------- ``0.4.0`` | ``GCC/11.3.0`` +``0.4.0`` | ``GCC/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/LAME.md b/docs/version-specific/supported-software/l/LAME.md index d32227f0c..294d92eca 100644 --- a/docs/version-specific/supported-software/l/LAME.md +++ b/docs/version-specific/supported-software/l/LAME.md @@ -17,6 +17,7 @@ version | toolchain ``3.100`` | ``GCCcore/12.2.0`` ``3.100`` | ``GCCcore/12.3.0`` ``3.100`` | ``GCCcore/13.2.0`` +``3.100`` | ``GCCcore/13.3.0`` ``3.100`` | ``GCCcore/6.4.0`` ``3.100`` | ``GCCcore/7.3.0`` ``3.100`` | ``GCCcore/8.2.0`` diff --git a/docs/version-specific/supported-software/l/LLVM.md b/docs/version-specific/supported-software/l/LLVM.md index e2e260792..05e04eee5 100644 --- a/docs/version-specific/supported-software/l/LLVM.md +++ b/docs/version-specific/supported-software/l/LLVM.md @@ -22,6 +22,7 @@ version | versionsuffix | toolchain ``15.0.5`` | | ``GCCcore/12.2.0`` ``16.0.6`` | | ``GCCcore/12.3.0`` ``16.0.6`` | | ``GCCcore/13.2.0`` +``18.1.8`` | | ``GCCcore/13.3.0`` ``3.7.1`` | | ``foss/2016a`` ``3.7.1`` | | ``gimkl/2.11.5`` ``3.7.1`` | | ``intel/2016a`` diff --git a/docs/version-specific/supported-software/l/LMDB.md b/docs/version-specific/supported-software/l/LMDB.md index 380a7a473..eea3e96b7 100644 --- a/docs/version-specific/supported-software/l/LMDB.md +++ b/docs/version-specific/supported-software/l/LMDB.md @@ -23,6 +23,7 @@ version | toolchain ``0.9.29`` | ``GCCcore/11.3.0`` ``0.9.29`` | ``GCCcore/12.2.0`` ``0.9.31`` | ``GCCcore/12.3.0`` +``0.9.31`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/LRBinner.md b/docs/version-specific/supported-software/l/LRBinner.md new file mode 100644 index 000000000..ef7ad0196 --- /dev/null +++ b/docs/version-specific/supported-software/l/LRBinner.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# LRBinner + +LRBinner is a long-read binning tool published in WABI 2021 proceedings and AMB. + +*homepage*: + +version | toolchain +--------|---------- +``0.1`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/l/LZO.md b/docs/version-specific/supported-software/l/LZO.md index fcf542f46..7a697eecf 100644 --- a/docs/version-specific/supported-software/l/LZO.md +++ b/docs/version-specific/supported-software/l/LZO.md @@ -19,6 +19,7 @@ version | toolchain ``2.10`` | ``GCCcore/12.2.0`` ``2.10`` | ``GCCcore/12.3.0`` ``2.10`` | ``GCCcore/13.2.0`` +``2.10`` | ``GCCcore/13.3.0`` ``2.10`` | ``GCCcore/6.4.0`` ``2.10`` | ``GCCcore/7.3.0`` ``2.10`` | ``GCCcore/8.2.0`` diff --git a/docs/version-specific/supported-software/l/LittleCMS.md b/docs/version-specific/supported-software/l/LittleCMS.md index 572d29c91..dc0b1aa0e 100644 --- a/docs/version-specific/supported-software/l/LittleCMS.md +++ b/docs/version-specific/supported-software/l/LittleCMS.md @@ -17,6 +17,7 @@ version | toolchain ``2.14`` | ``GCCcore/12.2.0`` ``2.15`` | ``GCCcore/12.3.0`` ``2.15`` | ``GCCcore/13.2.0`` +``2.16`` | ``GCCcore/13.3.0`` ``2.7`` | ``intel/2016a`` ``2.8`` | ``GCCcore/6.4.0`` ``2.8`` | ``foss/2016b`` diff --git a/docs/version-specific/supported-software/l/index.md b/docs/version-specific/supported-software/l/index.md index 803d4db18..29d43f5d9 100644 --- a/docs/version-specific/supported-software/l/index.md +++ b/docs/version-specific/supported-software/l/index.md @@ -18,6 +18,8 @@ search: * [lancet](lancet.md) * [LangChain](LangChain.md) * [langchain-anthropic](langchain-anthropic.md) + * [langchain-mistralai](langchain-mistralai.md) + * [langchain-openai](langchain-openai.md) * [LAPACK](LAPACK.md) * [LASSO-Python](LASSO-Python.md) * [LAST](LAST.md) @@ -243,6 +245,8 @@ search: * [LPeg](LPeg.md) * [LPJmL](LPJmL.md) * [lpsolve](lpsolve.md) + * [LRBinner](LRBinner.md) + * [lrcalc](lrcalc.md) * [lrslib](lrslib.md) * [LS-PrePost](LS-PrePost.md) * [LSD2](LSD2.md) diff --git a/docs/version-specific/supported-software/l/langchain-mistralai.md b/docs/version-specific/supported-software/l/langchain-mistralai.md new file mode 100644 index 000000000..d0ddd81bf --- /dev/null +++ b/docs/version-specific/supported-software/l/langchain-mistralai.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# langchain-mistralai + +This package contains the LangChain integrations for MistralAI through their mistralai SDK. + +*homepage*: + +version | toolchain +--------|---------- +``0.1.8`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/l/langchain-openai.md b/docs/version-specific/supported-software/l/langchain-openai.md new file mode 100644 index 000000000..7d4130f69 --- /dev/null +++ b/docs/version-specific/supported-software/l/langchain-openai.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# langchain-openai + +This package contains the LangChain integrations for OpenAI through their openai SDK. + +*homepage*: + +version | toolchain +--------|---------- +``0.1.8`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/l/libcircle.md b/docs/version-specific/supported-software/l/libcircle.md index 1b72da498..99ed273f7 100644 --- a/docs/version-specific/supported-software/l/libcircle.md +++ b/docs/version-specific/supported-software/l/libcircle.md @@ -16,6 +16,7 @@ version | toolchain ``0.3`` | ``gompi/2020b`` ``0.3`` | ``gompi/2022a`` ``0.3`` | ``gompi/2023a`` +``0.3`` | ``gompi/2024a`` ``0.3`` | ``iimpi/2020a`` diff --git a/docs/version-specific/supported-software/l/libdap.md b/docs/version-specific/supported-software/l/libdap.md index 9b3c5a7ce..2ded9b330 100644 --- a/docs/version-specific/supported-software/l/libdap.md +++ b/docs/version-specific/supported-software/l/libdap.md @@ -16,6 +16,7 @@ version | versionsuffix | toolchain ``3.19.1`` | | ``foss/2017b`` ``3.19.1`` | | ``intel/2017b`` ``3.20.11`` | | ``GCCcore/11.3.0`` +``3.20.11`` | | ``GCCcore/12.3.0`` ``3.20.3`` | | ``GCCcore/7.3.0`` ``3.20.4`` | | ``GCCcore/8.2.0`` ``3.20.6`` | | ``GCCcore/8.3.0`` diff --git a/docs/version-specific/supported-software/l/libdrm.md b/docs/version-specific/supported-software/l/libdrm.md index b89180f62..ac77bddf3 100644 --- a/docs/version-specific/supported-software/l/libdrm.md +++ b/docs/version-specific/supported-software/l/libdrm.md @@ -18,6 +18,7 @@ version | toolchain ``2.4.114`` | ``GCCcore/12.2.0`` ``2.4.115`` | ``GCCcore/12.3.0`` ``2.4.117`` | ``GCCcore/13.2.0`` +``2.4.122`` | ``GCCcore/13.3.0`` ``2.4.67`` | ``foss/2016a`` ``2.4.67`` | ``gimkl/2.11.5`` ``2.4.67`` | ``intel/2016a`` diff --git a/docs/version-specific/supported-software/l/libdwarf.md b/docs/version-specific/supported-software/l/libdwarf.md index a5e68e9d9..4000ffe92 100644 --- a/docs/version-specific/supported-software/l/libdwarf.md +++ b/docs/version-specific/supported-software/l/libdwarf.md @@ -10,6 +10,7 @@ The DWARF Debugging Information Format is of interest to programmers working on version | toolchain --------|---------- +``0.10.1`` | ``GCCcore/13.3.0`` ``0.4.1`` | ``GCCcore/11.3.0`` ``0.7.0`` | ``GCCcore/12.3.0`` ``0.9.2`` | ``GCCcore/13.2.0`` diff --git a/docs/version-specific/supported-software/l/libedit.md b/docs/version-specific/supported-software/l/libedit.md index e1a14f48d..376045f58 100644 --- a/docs/version-specific/supported-software/l/libedit.md +++ b/docs/version-specific/supported-software/l/libedit.md @@ -16,6 +16,7 @@ version | toolchain ``20191231`` | ``GCCcore/9.3.0`` ``20210910`` | ``GCCcore/10.3.0`` ``20210910`` | ``GCCcore/11.2.0`` +``20240517`` | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libgeotiff.md b/docs/version-specific/supported-software/l/libgeotiff.md index 98308b283..eb4997a05 100644 --- a/docs/version-specific/supported-software/l/libgeotiff.md +++ b/docs/version-specific/supported-software/l/libgeotiff.md @@ -22,6 +22,7 @@ version | toolchain ``1.7.1`` | ``GCCcore/11.3.0`` ``1.7.1`` | ``GCCcore/12.2.0`` ``1.7.1`` | ``GCCcore/12.3.0`` +``1.7.3`` | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libgit2.md b/docs/version-specific/supported-software/l/libgit2.md index ce026d71e..9a5eea4db 100644 --- a/docs/version-specific/supported-software/l/libgit2.md +++ b/docs/version-specific/supported-software/l/libgit2.md @@ -19,6 +19,7 @@ version | toolchain ``1.5.0`` | ``GCCcore/12.2.0`` ``1.7.1`` | ``GCCcore/12.3.0`` ``1.7.2`` | ``GCCcore/13.2.0`` +``1.8.1`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libglvnd.md b/docs/version-specific/supported-software/l/libglvnd.md index 71e6b32d6..9d712f594 100644 --- a/docs/version-specific/supported-software/l/libglvnd.md +++ b/docs/version-specific/supported-software/l/libglvnd.md @@ -20,6 +20,7 @@ version | toolchain ``1.6.0`` | ``GCCcore/12.2.0`` ``1.6.0`` | ``GCCcore/12.3.0`` ``1.7.0`` | ``GCCcore/13.2.0`` +``1.7.0`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libidn2.md b/docs/version-specific/supported-software/l/libidn2.md index 79b15af8d..14580ff40 100644 --- a/docs/version-specific/supported-software/l/libidn2.md +++ b/docs/version-specific/supported-software/l/libidn2.md @@ -20,6 +20,7 @@ version | toolchain ``2.3.2`` | ``GCCcore/11.2.0`` ``2.3.2`` | ``GCCcore/11.3.0`` ``2.3.2`` | ``GCCcore/13.2.0`` +``2.3.4`` | ``GCCcore/12.2.0`` ``2.3.7`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/l/libmatheval.md b/docs/version-specific/supported-software/l/libmatheval.md index f47fa8fe6..78cea7f1e 100644 --- a/docs/version-specific/supported-software/l/libmatheval.md +++ b/docs/version-specific/supported-software/l/libmatheval.md @@ -6,10 +6,11 @@ search: GNU libmatheval is a library (callable from C and Fortran) to parse and evaluate symbolic expressions input as text. -*homepage*: +*homepage*: version | toolchain --------|---------- +``1.1.11`` | ``GCCcore/13.3.0`` ``1.1.11`` | ``GCCcore/6.4.0`` ``1.1.11`` | ``GCCcore/7.3.0`` ``1.1.11`` | ``GCCcore/8.2.0`` diff --git a/docs/version-specific/supported-software/l/libogg.md b/docs/version-specific/supported-software/l/libogg.md index 2e60f0647..baafae398 100644 --- a/docs/version-specific/supported-software/l/libogg.md +++ b/docs/version-specific/supported-software/l/libogg.md @@ -16,6 +16,8 @@ version | toolchain ``1.3.5`` | ``GCCcore/11.3.0`` ``1.3.5`` | ``GCCcore/12.2.0`` ``1.3.5`` | ``GCCcore/12.3.0`` +``1.3.5`` | ``GCCcore/13.2.0`` +``1.3.5`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libopus.md b/docs/version-specific/supported-software/l/libopus.md index e10550701..e06982764 100644 --- a/docs/version-specific/supported-software/l/libopus.md +++ b/docs/version-specific/supported-software/l/libopus.md @@ -13,6 +13,8 @@ version | toolchain ``1.3.1`` | ``GCCcore/11.3.0`` ``1.3.1`` | ``GCCcore/12.2.0`` ``1.4`` | ``GCCcore/12.3.0`` +``1.5.2`` | ``GCCcore/13.2.0`` +``1.5.2`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libreadline.md b/docs/version-specific/supported-software/l/libreadline.md index ebf8debb6..9ab9dcd9c 100644 --- a/docs/version-specific/supported-software/l/libreadline.md +++ b/docs/version-specific/supported-software/l/libreadline.md @@ -39,7 +39,6 @@ version | toolchain ``8.0`` | ``GCCcore/8.3.0`` ``8.0`` | ``GCCcore/9.3.0`` ``8.0`` | ``system`` -``8.1`` | ``FCC/4.5.0`` ``8.1`` | ``GCCcore/10.3.0`` ``8.1`` | ``GCCcore/11.2.0`` ``8.1`` | ``GCCcore/11.3.0`` diff --git a/docs/version-specific/supported-software/l/libsigc++.md b/docs/version-specific/supported-software/l/libsigc++.md index 82dcfa3a0..1b389890e 100644 --- a/docs/version-specific/supported-software/l/libsigc++.md +++ b/docs/version-specific/supported-software/l/libsigc++.md @@ -17,6 +17,9 @@ version | toolchain ``2.10.8`` | ``GCCcore/10.3.0`` ``2.12.1`` | ``GCCcore/11.3.0`` ``3.4.0`` | ``GCCcore/11.3.0`` +``3.6.0`` | ``GCCcore/12.2.0`` +``3.6.0`` | ``GCCcore/12.3.0`` +``3.6.0`` | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libsndfile.md b/docs/version-specific/supported-software/l/libsndfile.md index 42ce75e6b..889542f11 100644 --- a/docs/version-specific/supported-software/l/libsndfile.md +++ b/docs/version-specific/supported-software/l/libsndfile.md @@ -22,6 +22,8 @@ version | toolchain ``1.1.0`` | ``GCCcore/11.3.0`` ``1.2.0`` | ``GCCcore/12.2.0`` ``1.2.2`` | ``GCCcore/12.3.0`` +``1.2.2`` | ``GCCcore/13.2.0`` +``1.2.2`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libsodium.md b/docs/version-specific/supported-software/l/libsodium.md index 6bee71eb9..8c095f3df 100644 --- a/docs/version-specific/supported-software/l/libsodium.md +++ b/docs/version-specific/supported-software/l/libsodium.md @@ -28,6 +28,7 @@ version | toolchain ``1.0.18`` | ``GCCcore/8.3.0`` ``1.0.18`` | ``GCCcore/9.3.0`` ``1.0.19`` | ``GCCcore/13.2.0`` +``1.0.20`` | ``GCCcore/13.3.0`` ``1.0.6`` | ``intel/2016a`` ``1.0.8`` | ``foss/2016a`` diff --git a/docs/version-specific/supported-software/l/libspatialindex.md b/docs/version-specific/supported-software/l/libspatialindex.md index 17b50633c..7103b951b 100644 --- a/docs/version-specific/supported-software/l/libspatialindex.md +++ b/docs/version-specific/supported-software/l/libspatialindex.md @@ -20,6 +20,7 @@ version | toolchain ``1.9.3`` | ``GCCcore/12.2.0`` ``1.9.3`` | ``GCCcore/12.3.0`` ``1.9.3`` | ``GCCcore/13.2.0`` +``2.0.0`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libtool.md b/docs/version-specific/supported-software/l/libtool.md index 3bfe92160..d58d54737 100644 --- a/docs/version-specific/supported-software/l/libtool.md +++ b/docs/version-specific/supported-software/l/libtool.md @@ -14,7 +14,6 @@ version | toolchain ``2.4.2`` | ``GCC/4.9.2`` ``2.4.5`` | ``GCC/4.8.4`` ``2.4.5`` | ``GCC/4.9.2`` -``2.4.6`` | ``FCC/4.5.0`` ``2.4.6`` | ``GCC/4.8.4`` ``2.4.6`` | ``GCC/4.9.2`` ``2.4.6`` | ``GCC/4.9.3-2.25`` diff --git a/docs/version-specific/supported-software/l/libunistring.md b/docs/version-specific/supported-software/l/libunistring.md index 77eabe002..564f2fd24 100644 --- a/docs/version-specific/supported-software/l/libunistring.md +++ b/docs/version-specific/supported-software/l/libunistring.md @@ -28,6 +28,7 @@ version | toolchain ``1.0`` | ``GCCcore/11.3.0`` ``1.1`` | ``GCCcore/10.2.0`` ``1.1`` | ``GCCcore/12.3.0`` +``1.2`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libunwind.md b/docs/version-specific/supported-software/l/libunwind.md index f336a94cb..de01cb1e3 100644 --- a/docs/version-specific/supported-software/l/libunwind.md +++ b/docs/version-specific/supported-software/l/libunwind.md @@ -28,6 +28,7 @@ version | toolchain ``1.6.2`` | ``GCCcore/12.2.0`` ``1.6.2`` | ``GCCcore/12.3.0`` ``1.6.2`` | ``GCCcore/13.2.0`` +``1.8.1`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libvorbis.md b/docs/version-specific/supported-software/l/libvorbis.md index ae44c1388..f99b89077 100644 --- a/docs/version-specific/supported-software/l/libvorbis.md +++ b/docs/version-specific/supported-software/l/libvorbis.md @@ -16,6 +16,8 @@ version | toolchain ``1.3.7`` | ``GCCcore/11.3.0`` ``1.3.7`` | ``GCCcore/12.2.0`` ``1.3.7`` | ``GCCcore/12.3.0`` +``1.3.7`` | ``GCCcore/13.2.0`` +``1.3.7`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libwebp.md b/docs/version-specific/supported-software/l/libwebp.md index 8269a1d10..0ecb664ee 100644 --- a/docs/version-specific/supported-software/l/libwebp.md +++ b/docs/version-specific/supported-software/l/libwebp.md @@ -22,6 +22,7 @@ version | toolchain ``1.3.1`` | ``GCCcore/12.2.0`` ``1.3.1`` | ``GCCcore/12.3.0`` ``1.3.2`` | ``GCCcore/13.2.0`` +``1.4.0`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libxslt.md b/docs/version-specific/supported-software/l/libxslt.md index db4bf1d29..e041ef010 100644 --- a/docs/version-specific/supported-software/l/libxslt.md +++ b/docs/version-specific/supported-software/l/libxslt.md @@ -30,6 +30,7 @@ version | versionsuffix | toolchain ``1.1.37`` | | ``GCCcore/12.2.0`` ``1.1.38`` | | ``GCCcore/12.3.0`` ``1.1.38`` | | ``GCCcore/13.2.0`` +``1.1.42`` | | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libzip.md b/docs/version-specific/supported-software/l/libzip.md index f42684826..c89fe79b3 100644 --- a/docs/version-specific/supported-software/l/libzip.md +++ b/docs/version-specific/supported-software/l/libzip.md @@ -10,6 +10,7 @@ libzip is a C library for reading, creating, and modifying zip archives. version | toolchain --------|---------- +``1.10.1`` | ``GCCcore/13.2.0`` ``1.5.2`` | ``GCCcore/8.2.0`` ``1.7.3`` | ``GCCcore/10.2.0`` ``1.7.3`` | ``GCCcore/10.3.0`` diff --git a/docs/version-specific/supported-software/l/longread_umi.md b/docs/version-specific/supported-software/l/longread_umi.md index 840cb4ea4..2def83133 100644 --- a/docs/version-specific/supported-software/l/longread_umi.md +++ b/docs/version-specific/supported-software/l/longread_umi.md @@ -11,6 +11,7 @@ A collection of scripts for processing longread UMI data. version | toolchain --------|---------- ``0.3.2`` | ``foss/2020b`` +``0.3.2`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/lrcalc.md b/docs/version-specific/supported-software/l/lrcalc.md new file mode 100644 index 000000000..babcd0322 --- /dev/null +++ b/docs/version-specific/supported-software/l/lrcalc.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# lrcalc + +The Littlewood-Richardson Calculator is a program designed to compute Littlewood-Richardson coefficients. + +*homepage*: + +version | toolchain +--------|---------- +``2.1`` | ``GCCcore/13.2.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/l/lwgrp.md b/docs/version-specific/supported-software/l/lwgrp.md index 86ad2b331..b82aaa3e1 100644 --- a/docs/version-specific/supported-software/l/lwgrp.md +++ b/docs/version-specific/supported-software/l/lwgrp.md @@ -17,6 +17,7 @@ version | toolchain ``1.0.3`` | ``gompi/2020b`` ``1.0.5`` | ``gompi/2022a`` ``1.0.5`` | ``gompi/2023a`` +``1.0.6`` | ``gompi/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/lxml.md b/docs/version-specific/supported-software/l/lxml.md index 9eb99bb30..84aeee639 100644 --- a/docs/version-specific/supported-software/l/lxml.md +++ b/docs/version-specific/supported-software/l/lxml.md @@ -31,6 +31,7 @@ version | versionsuffix | toolchain ``4.9.2`` | | ``GCCcore/12.2.0`` ``4.9.2`` | | ``GCCcore/12.3.0`` ``4.9.3`` | | ``GCCcore/13.2.0`` +``5.3.0`` | | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/M4.md b/docs/version-specific/supported-software/m/M4.md index 5fcf4d611..60248f809 100644 --- a/docs/version-specific/supported-software/m/M4.md +++ b/docs/version-specific/supported-software/m/M4.md @@ -43,7 +43,6 @@ version | toolchain ``1.4.17`` | ``iomkl/2016.07`` ``1.4.17`` | ``iomkl/2016.09-GCC-4.9.3-2.25`` ``1.4.17`` | ``system`` -``1.4.18`` | ``FCC/4.5.0`` ``1.4.18`` | ``GCCcore/10.1.0`` ``1.4.18`` | ``GCCcore/10.2.0`` ``1.4.18`` | ``GCCcore/10.3.0`` @@ -76,6 +75,7 @@ version | toolchain ``1.4.19`` | ``GCCcore/13.2.0`` ``1.4.19`` | ``GCCcore/13.3.0`` ``1.4.19`` | ``GCCcore/14.1.0`` +``1.4.19`` | ``GCCcore/14.2.0`` ``1.4.19`` | ``GCCcore/9.4.0`` ``1.4.19`` | ``GCCcore/9.5.0`` ``1.4.19`` | ``system`` diff --git a/docs/version-specific/supported-software/m/MAGIC.md b/docs/version-specific/supported-software/m/MAGIC.md new file mode 100644 index 000000000..496626b85 --- /dev/null +++ b/docs/version-specific/supported-software/m/MAGIC.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# MAGIC + +Markov Affinity-based Graph Imputation of Cells (MAGIC) is an algorithm for denoising high-dimensional data most commonly applied to single-cell RNA sequencing data. + +*homepage*: + +version | toolchain +--------|---------- +``3.0.0`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/m/MATES.md b/docs/version-specific/supported-software/m/MATES.md new file mode 100644 index 000000000..0c08832b5 --- /dev/null +++ b/docs/version-specific/supported-software/m/MATES.md @@ -0,0 +1,18 @@ +--- +search: + boost: 0.5 +--- +# MATES + +A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data. + +*homepage*: + +version | versionsuffix | toolchain +--------|---------------|---------- +``0.1.2-20240813`` | ``-CUDA-12.1.1`` | ``foss/2023a`` +``0.1.2-20240813`` | | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/m/MBX.md b/docs/version-specific/supported-software/m/MBX.md new file mode 100644 index 000000000..24fcf801a --- /dev/null +++ b/docs/version-specific/supported-software/m/MBX.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# MBX + +MBX is an energy and force calculator for data-driven many-body simulations + +*homepage*: + +version | toolchain +--------|---------- +``1.1.0`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/m/MCR.md b/docs/version-specific/supported-software/m/MCR.md index 9b8bf279a..13c7f5b62 100644 --- a/docs/version-specific/supported-software/m/MCR.md +++ b/docs/version-specific/supported-software/m/MCR.md @@ -33,6 +33,7 @@ version | versionsuffix | toolchain ``R2022a`` | ``.5`` | ``system`` ``R2022a`` | | ``system`` ``R2023a`` | | ``system`` +``R2024a`` | ``.4`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/METIS.md b/docs/version-specific/supported-software/m/METIS.md index 699a7792d..cd4e05092 100644 --- a/docs/version-specific/supported-software/m/METIS.md +++ b/docs/version-specific/supported-software/m/METIS.md @@ -19,6 +19,7 @@ version | versionsuffix | toolchain ``5.1.0`` | | ``GCCcore/12.2.0`` ``5.1.0`` | | ``GCCcore/12.3.0`` ``5.1.0`` | | ``GCCcore/13.2.0`` +``5.1.0`` | | ``GCCcore/13.3.0`` ``5.1.0`` | | ``GCCcore/6.4.0`` ``5.1.0`` | | ``GCCcore/7.3.0`` ``5.1.0`` | | ``GCCcore/8.2.0`` diff --git a/docs/version-specific/supported-software/m/MONAI.md b/docs/version-specific/supported-software/m/MONAI.md index 82485caa5..f93517c9c 100644 --- a/docs/version-specific/supported-software/m/MONAI.md +++ b/docs/version-specific/supported-software/m/MONAI.md @@ -14,6 +14,7 @@ version | versionsuffix | toolchain ``0.8.0`` | | ``foss/2021a`` ``1.0.1`` | ``-CUDA-11.7.0`` | ``foss/2022a`` ``1.0.1`` | | ``foss/2022a`` +``1.3.0`` | | ``foss/2022b`` ``1.3.0`` | ``-CUDA-12.1.1`` | ``foss/2023a`` ``1.3.0`` | | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/m/MPICH.md b/docs/version-specific/supported-software/m/MPICH.md index ea353e881..dc352f685 100644 --- a/docs/version-specific/supported-software/m/MPICH.md +++ b/docs/version-specific/supported-software/m/MPICH.md @@ -17,6 +17,7 @@ version | toolchain ``3.3.2`` | ``GCC/10.2.0`` ``3.3.2`` | ``GCC/9.3.0`` ``3.4.2`` | ``GCC/10.3.0`` +``4.2.1`` | ``GCC/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/MUMPS.md b/docs/version-specific/supported-software/m/MUMPS.md index 13ee73dfe..fe1aa48e3 100644 --- a/docs/version-specific/supported-software/m/MUMPS.md +++ b/docs/version-specific/supported-software/m/MUMPS.md @@ -30,7 +30,10 @@ version | versionsuffix | toolchain ``5.5.1`` | ``-metis`` | ``foss/2022a`` ``5.6.1`` | ``-metis`` | ``foss/2022b`` ``5.6.1`` | ``-metis`` | ``foss/2023a`` +``5.6.1`` | ``-metis`` | ``foss/2023b`` ``5.6.1`` | ``-metis-seq`` | ``gomkl/2023a`` +``5.7.2`` | ``-parmetis`` | ``foss/2023b`` +``5.7.2`` | ``-parmetis`` | ``intel/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/MUSCLE.md b/docs/version-specific/supported-software/m/MUSCLE.md index 1953638b3..ddbb71cac 100644 --- a/docs/version-specific/supported-software/m/MUSCLE.md +++ b/docs/version-specific/supported-software/m/MUSCLE.md @@ -30,6 +30,7 @@ version | versionsuffix | toolchain ``5.1`` | | ``GCCcore/11.2.0`` ``5.1.0`` | | ``GCCcore/10.3.0`` ``5.1.0`` | | ``GCCcore/11.3.0`` +``5.1.0`` | | ``GCCcore/12.2.0`` ``5.1.0`` | | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/m/MariaDB.md b/docs/version-specific/supported-software/m/MariaDB.md index 5c7bf15cb..83b6436c8 100644 --- a/docs/version-specific/supported-software/m/MariaDB.md +++ b/docs/version-specific/supported-software/m/MariaDB.md @@ -27,6 +27,7 @@ version | toolchain ``10.6.4`` | ``GCC/10.3.0`` ``10.6.4`` | ``GCC/11.2.0`` ``10.9.3`` | ``GCC/11.3.0`` +``11.6.0`` | ``GCC/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/Maven.md b/docs/version-specific/supported-software/m/Maven.md index f7be27163..3fb50891d 100644 --- a/docs/version-specific/supported-software/m/Maven.md +++ b/docs/version-specific/supported-software/m/Maven.md @@ -17,6 +17,7 @@ version | toolchain ``3.5.2`` | ``system`` ``3.6.0`` | ``system`` ``3.6.3`` | ``system`` +``3.9.7`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/Mercurial.md b/docs/version-specific/supported-software/m/Mercurial.md index 0088a92cf..88411bd50 100644 --- a/docs/version-specific/supported-software/m/Mercurial.md +++ b/docs/version-specific/supported-software/m/Mercurial.md @@ -16,6 +16,7 @@ version | versionsuffix | toolchain ``5.8`` | | ``GCCcore/10.3.0`` ``6.2`` | | ``GCCcore/11.3.0`` ``6.4.5`` | | ``GCCcore/12.3.0`` +``6.8.1`` | | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/Mesa.md b/docs/version-specific/supported-software/m/Mesa.md index e4fb3d31b..352ae6159 100644 --- a/docs/version-specific/supported-software/m/Mesa.md +++ b/docs/version-specific/supported-software/m/Mesa.md @@ -41,6 +41,7 @@ version | toolchain ``22.2.4`` | ``GCCcore/12.2.0`` ``23.1.4`` | ``GCCcore/12.3.0`` ``23.1.9`` | ``GCCcore/13.2.0`` +``24.1.3`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/ffmpi.md b/docs/version-specific/supported-software/m/MeshLab.md similarity index 83% rename from docs/version-specific/supported-software/f/ffmpi.md rename to docs/version-specific/supported-software/m/MeshLab.md index e584c1fdd..edc4b5c30 100644 --- a/docs/version-specific/supported-software/f/ffmpi.md +++ b/docs/version-specific/supported-software/m/MeshLab.md @@ -2,15 +2,15 @@ search: boost: 0.5 --- -# ffmpi +# MeshLab -Fujitsu Compiler based compiler toolchain, including Fujitsu MPI for MPI support. +The open source mesh processing system. -*homepage*: <(none)> +*homepage*: version | toolchain --------|---------- -``4.5.0`` | ``system`` +``2023.12`` | ``GCC/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/Miniconda3.md b/docs/version-specific/supported-software/m/Miniconda3.md index 4925ad708..039e4f551 100644 --- a/docs/version-specific/supported-software/m/Miniconda3.md +++ b/docs/version-specific/supported-software/m/Miniconda3.md @@ -11,6 +11,7 @@ Miniconda is a free minimal installer for conda. It is a small, bootstrap versi version | toolchain --------|---------- ``22.11.1-1`` | ``system`` +``23.10.0-1`` | ``system`` ``23.5.2-0`` | ``system`` ``23.9.0-0`` | ``system`` ``4.12.0`` | ``system`` diff --git a/docs/version-specific/supported-software/m/MultiQC.md b/docs/version-specific/supported-software/m/MultiQC.md index cc10184aa..da4996f51 100644 --- a/docs/version-specific/supported-software/m/MultiQC.md +++ b/docs/version-specific/supported-software/m/MultiQC.md @@ -20,6 +20,7 @@ version | versionsuffix | toolchain ``1.2`` | ``-Python-3.6.3`` | ``foss/2017b`` ``1.2`` | ``-Python-2.7.14`` | ``intel/2017b`` ``1.2`` | ``-Python-3.6.3`` | ``intel/2017b`` +``1.22.3`` | | ``foss/2023b`` ``1.6`` | ``-Python-2.7.14`` | ``foss/2017b`` ``1.6`` | ``-Python-3.6.3`` | ``foss/2017b`` ``1.6`` | ``-Python-2.7.14`` | ``intel/2017b`` diff --git a/docs/version-specific/supported-software/m/index.md b/docs/version-specific/supported-software/m/index.md index 2fc9d1ed4..63439f03b 100644 --- a/docs/version-specific/supported-software/m/index.md +++ b/docs/version-specific/supported-software/m/index.md @@ -20,6 +20,7 @@ search: * [maeparser](maeparser.md) * [MAFFT](MAFFT.md) * [MAGeCK](MAGeCK.md) + * [MAGIC](MAGIC.md) * [magick](magick.md) * [Magics](Magics.md) * [magma](magma.md) @@ -34,6 +35,7 @@ search: * [makeinfo](makeinfo.md) * [MAKER](MAKER.md) * [Mako](Mako.md) + * [mallard-ducktype](mallard-ducktype.md) * [Mamba](Mamba.md) * [mandrake](mandrake.md) * [mannkendall](mannkendall.md) @@ -49,6 +51,7 @@ search: * [Mash](Mash.md) * [Mashtree](Mashtree.md) * [MaSuRCA](MaSuRCA.md) + * [MATES](MATES.md) * [Mathematica](Mathematica.md) * [MathGL](MathGL.md) * [MATIO](MATIO.md) @@ -70,8 +73,10 @@ search: * [MbedTLS](MbedTLS.md) * [MBROLA](MBROLA.md) * [mbuffer](mbuffer.md) + * [MBX](MBX.md) * [mc](mc.md) * [MCL](MCL.md) + * [mcqd](mcqd.md) * [MCR](MCR.md) * [mctc-lib](mctc-lib.md) * [mcu](mcu.md) @@ -108,6 +113,7 @@ search: * [Mesa-demos](Mesa-demos.md) * [meshalyzer](meshalyzer.md) * [meshio](meshio.md) + * [MeshLab](MeshLab.md) * [meshtool](meshtool.md) * [Meson](Meson.md) * [meson-python](meson-python.md) @@ -127,6 +133,7 @@ search: * [MetaPhlAn2](MetaPhlAn2.md) * [metaWRAP](metaWRAP.md) * [Metaxa2](Metaxa2.md) + * [meteogrid](meteogrid.md) * [methylartist](methylartist.md) * [MethylDackel](MethylDackel.md) * [methylpy](methylpy.md) @@ -137,6 +144,7 @@ search: * [mhcflurry](mhcflurry.md) * [mhcnuggets](mhcnuggets.md) * [MICOM](MICOM.md) + * [micro-sam](micro-sam.md) * [MicrobeAnnotator](MicrobeAnnotator.md) * [microctools](microctools.md) * [MiGEC](MiGEC.md) @@ -157,6 +165,7 @@ search: * [Minimac4](Minimac4.md) * [minimap2](minimap2.md) * [Minipolish](Minipolish.md) + * [miniprot](miniprot.md) * [MiniSat](MiniSat.md) * [minizip](minizip.md) * [MINPACK](MINPACK.md) diff --git a/docs/version-specific/supported-software/m/maeparser.md b/docs/version-specific/supported-software/m/maeparser.md index 9c525c22f..b81962ab4 100644 --- a/docs/version-specific/supported-software/m/maeparser.md +++ b/docs/version-specific/supported-software/m/maeparser.md @@ -17,6 +17,7 @@ version | toolchain ``1.3.0`` | ``gompi/2022a`` ``1.3.0`` | ``iimpi/2020a`` ``1.3.1`` | ``gompi/2023a`` +``1.3.1`` | ``gompi/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/makedepend.md b/docs/version-specific/supported-software/m/makedepend.md index dcee11d74..44735126b 100644 --- a/docs/version-specific/supported-software/m/makedepend.md +++ b/docs/version-specific/supported-software/m/makedepend.md @@ -22,6 +22,7 @@ version | toolchain ``1.0.6`` | ``GCCcore/9.3.0`` ``1.0.7`` | ``GCCcore/11.3.0`` ``1.0.7`` | ``GCCcore/12.3.0`` +``1.0.9`` | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/makeinfo.md b/docs/version-specific/supported-software/m/makeinfo.md index 204058f2e..da5b4cc05 100644 --- a/docs/version-specific/supported-software/m/makeinfo.md +++ b/docs/version-specific/supported-software/m/makeinfo.md @@ -4,13 +4,12 @@ search: --- # makeinfo -makeinfo is part of the Texinfo project, the official documentation format of the GNU project. +makeinfo is part of the Texinfo project, the official documentation format of the GNU project. This is a minimal build with very basic functionality. Should only be used for build dependencies. *homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``6.7`` | | ``FCC/4.5.0`` ``6.7`` | ``-minimal`` | ``GCCcore/10.2.0`` ``6.7`` | | ``GCCcore/10.2.0`` ``6.7`` | ``-minimal`` | ``GCCcore/10.3.0`` diff --git a/docs/version-specific/supported-software/m/mallard-ducktype.md b/docs/version-specific/supported-software/m/mallard-ducktype.md new file mode 100644 index 000000000..bdfdad746 --- /dev/null +++ b/docs/version-specific/supported-software/m/mallard-ducktype.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# mallard-ducktype + +Parser for the lightweight Ducktype syntax for Mallard + +*homepage*: + +version | toolchain +--------|---------- +``1.0.2`` | ``GCCcore/12.3.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/m/matplotlib.md b/docs/version-specific/supported-software/m/matplotlib.md index 9d7839663..7a268bd86 100644 --- a/docs/version-specific/supported-software/m/matplotlib.md +++ b/docs/version-specific/supported-software/m/matplotlib.md @@ -106,6 +106,7 @@ version | versionsuffix | toolchain ``3.7.2`` | | ``gfbf/2023a`` ``3.7.2`` | | ``iimkl/2023a`` ``3.8.2`` | | ``gfbf/2023b`` +``3.9.2`` | | ``gfbf/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/maturin.md b/docs/version-specific/supported-software/m/maturin.md index 4c08650cb..4395a9caf 100644 --- a/docs/version-specific/supported-software/m/maturin.md +++ b/docs/version-specific/supported-software/m/maturin.md @@ -17,6 +17,7 @@ version | versionsuffix | toolchain ``1.4.0`` | ``-Rust-1.75.0`` | ``GCCcore/12.2.0`` ``1.4.0`` | ``-Rust-1.75.0`` | ``GCCcore/12.3.0`` ``1.5.0`` | ``-Rust-1.76.0`` | ``GCCcore/13.2.0`` +``1.6.0`` | | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/mcqd.md b/docs/version-specific/supported-software/m/mcqd.md new file mode 100644 index 000000000..ce03dc094 --- /dev/null +++ b/docs/version-specific/supported-software/m/mcqd.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# mcqd + +MaxCliqueDyn is a fast exact algorithm for finding a maximum clique in an undirected graph. + +*homepage*: + +version | toolchain +--------|---------- +``1.0.0`` | ``GCC/13.2.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/m/medaka.md b/docs/version-specific/supported-software/m/medaka.md index a1b4d4675..77c7729de 100644 --- a/docs/version-specific/supported-software/m/medaka.md +++ b/docs/version-specific/supported-software/m/medaka.md @@ -17,6 +17,10 @@ version | versionsuffix | toolchain ``1.1.3`` | ``-Python-3.7.4`` | ``foss/2019b`` ``1.11.3`` | | ``foss/2022a`` ``1.11.3`` | | ``foss/2023a`` +``1.12.0`` | ``-CUDA-12.1.1`` | ``foss/2023a`` +``1.12.0`` | | ``foss/2023a`` +``1.12.1`` | ``-CUDA-12.1.1`` | ``foss/2023a`` +``1.12.1`` | | ``foss/2023a`` ``1.2.0`` | ``-Python-3.7.4`` | ``foss/2019b`` ``1.4.3`` | ``-Python-3.7.4`` | ``foss/2019b`` ``1.4.3`` | | ``foss/2020b`` diff --git a/docs/version-specific/supported-software/m/meshio.md b/docs/version-specific/supported-software/m/meshio.md index f68395bc2..27acaf16a 100644 --- a/docs/version-specific/supported-software/m/meshio.md +++ b/docs/version-specific/supported-software/m/meshio.md @@ -14,6 +14,7 @@ version | versionsuffix | toolchain ``2.0.2`` | ``-Python-2.7.14`` | ``intel/2018a`` ``2.0.2`` | ``-Python-3.6.4`` | ``intel/2018a`` ``5.3.4`` | | ``foss/2022b`` +``5.3.5`` | | ``foss/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/meson-python.md b/docs/version-specific/supported-software/m/meson-python.md index c7ac42b64..49181e6a1 100644 --- a/docs/version-specific/supported-software/m/meson-python.md +++ b/docs/version-specific/supported-software/m/meson-python.md @@ -14,6 +14,7 @@ version | toolchain ``0.13.2`` | ``GCCcore/12.3.0`` ``0.15.0`` | ``GCCcore/12.3.0`` ``0.15.0`` | ``GCCcore/13.2.0`` +``0.16.0`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/meteogrid.md b/docs/version-specific/supported-software/m/meteogrid.md new file mode 100644 index 000000000..a0f090851 --- /dev/null +++ b/docs/version-specific/supported-software/m/meteogrid.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# meteogrid + +R package for working with gridded meteorological data. + +*homepage*: + +version | versionsuffix | toolchain +--------|---------------|---------- +``20240627`` | ``-R-4.3.2`` | ``gfbf/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/m/micro-sam.md b/docs/version-specific/supported-software/m/micro-sam.md new file mode 100644 index 000000000..11c14e2da --- /dev/null +++ b/docs/version-specific/supported-software/m/micro-sam.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# micro-sam + +Tools for segmentation and tracking in microscopy build on top of SegmentAnything. + +*homepage*: + +version | toolchain +--------|---------- +``1.0.1`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/m/miniasm.md b/docs/version-specific/supported-software/m/miniasm.md index 67768b9e2..ec6350b50 100644 --- a/docs/version-specific/supported-software/m/miniasm.md +++ b/docs/version-specific/supported-software/m/miniasm.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``0.3-20191007`` | ``GCCcore/10.3.0`` ``0.3-20191007`` | ``GCCcore/11.2.0`` +``0.3-20191007`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/miniprot.md b/docs/version-specific/supported-software/m/miniprot.md new file mode 100644 index 000000000..191a859fd --- /dev/null +++ b/docs/version-specific/supported-software/m/miniprot.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# miniprot + +Miniprot aligns a protein sequence against a genome with affine gap penalty, splicing and frameshift. It is primarily intended for annotating protein-coding genes in a new species using known genes from other species. Miniprot is similar to GeneWise and Exonerate in functionality but it can map proteins to whole genomes and is much faster at the residue alignment step. + +*homepage*: + +version | toolchain +--------|---------- +``0.13`` | ``GCCcore/12.3.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/m/ml-collections.md b/docs/version-specific/supported-software/m/ml-collections.md index 8cd58ca94..080c72db2 100644 --- a/docs/version-specific/supported-software/m/ml-collections.md +++ b/docs/version-specific/supported-software/m/ml-collections.md @@ -11,6 +11,7 @@ ML Collections is a library of Python Collections designed for ML use cases. version | toolchain --------|---------- ``0.1.1`` | ``foss/2022a`` +``0.1.1`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/mm-common.md b/docs/version-specific/supported-software/m/mm-common.md index 077384b44..285c6e07f 100644 --- a/docs/version-specific/supported-software/m/mm-common.md +++ b/docs/version-specific/supported-software/m/mm-common.md @@ -12,6 +12,10 @@ version | toolchain --------|---------- ``1.0.4`` | ``GCCcore/10.3.0`` ``1.0.5`` | ``GCCcore/11.3.0`` +``1.0.6`` | ``GCCcore/11.3.0`` +``1.0.6`` | ``GCCcore/12.2.0`` +``1.0.6`` | ``GCCcore/12.3.0`` +``1.0.6`` | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/molmod.md b/docs/version-specific/supported-software/m/molmod.md index 9d8cb5ba6..fc3fa76a3 100644 --- a/docs/version-specific/supported-software/m/molmod.md +++ b/docs/version-specific/supported-software/m/molmod.md @@ -26,7 +26,9 @@ version | versionsuffix | toolchain ``1.4.8`` | | ``foss/2020b`` ``1.4.8`` | | ``foss/2021a`` ``1.4.8`` | | ``foss/2021b`` +``1.4.8`` | | ``foss/2022a`` ``1.4.8`` | | ``foss/2023a`` +``1.4.8`` | | ``gfbf/2022b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/mpifileutils.md b/docs/version-specific/supported-software/m/mpifileutils.md index 16940a7e8..beff320c1 100644 --- a/docs/version-specific/supported-software/m/mpifileutils.md +++ b/docs/version-specific/supported-software/m/mpifileutils.md @@ -15,6 +15,7 @@ version | toolchain ``0.10.1`` | ``gompi/2020a`` ``0.11.1`` | ``gompi/2022a`` ``0.11.1`` | ``gompi/2023a`` +``0.11.1`` | ``gompi/2024a`` ``0.9.1`` | ``gompi/2019a`` ``0.9.1`` | ``iimpi/2019a`` diff --git a/docs/version-specific/supported-software/m/mrcfile.md b/docs/version-specific/supported-software/m/mrcfile.md index fd21062bf..01a8f25d9 100644 --- a/docs/version-specific/supported-software/m/mrcfile.md +++ b/docs/version-specific/supported-software/m/mrcfile.md @@ -14,6 +14,7 @@ version | toolchain ``1.3.0`` | ``foss/2021a`` ``1.3.0`` | ``fosscuda/2020b`` ``1.4.3`` | ``foss/2022a`` +``1.4.3`` | ``gfbf/2022b`` ``1.5.0`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/m/multichoose.md b/docs/version-specific/supported-software/m/multichoose.md index 5b66751bd..d9bb67615 100644 --- a/docs/version-specific/supported-software/m/multichoose.md +++ b/docs/version-specific/supported-software/m/multichoose.md @@ -14,6 +14,7 @@ version | toolchain ``1.0.3`` | ``GCCcore/10.3.0`` ``1.0.3`` | ``GCCcore/11.2.0`` ``1.0.3`` | ``GCCcore/11.3.0`` +``1.0.3`` | ``GCCcore/12.2.0`` ``1.0.3`` | ``GCCcore/12.3.0`` ``1.0.3`` | ``GCCcore/9.3.0`` diff --git a/docs/version-specific/supported-software/m/multiprocess.md b/docs/version-specific/supported-software/m/multiprocess.md index c3497b656..aa945e943 100644 --- a/docs/version-specific/supported-software/m/multiprocess.md +++ b/docs/version-specific/supported-software/m/multiprocess.md @@ -10,6 +10,7 @@ better multiprocessing and multithreading in python version | toolchain --------|---------- +``0.70.15`` | ``gfbf/2022b`` ``0.70.15`` | ``gfbf/2023a`` diff --git a/docs/version-specific/supported-software/m/mygene.md b/docs/version-specific/supported-software/m/mygene.md index 12f502cc9..192f76d1a 100644 --- a/docs/version-specific/supported-software/m/mygene.md +++ b/docs/version-specific/supported-software/m/mygene.md @@ -13,6 +13,7 @@ version | toolchain ``3.1.0`` | ``intel/2019a`` ``3.2.2`` | ``foss/2022a`` ``3.2.2`` | ``foss/2022b`` +``3.2.2`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/NCO.md b/docs/version-specific/supported-software/n/NCO.md index 458a73f0e..0995143f8 100644 --- a/docs/version-specific/supported-software/n/NCO.md +++ b/docs/version-specific/supported-software/n/NCO.md @@ -29,6 +29,7 @@ version | toolchain ``5.1.0`` | ``foss/2022a`` ``5.1.3`` | ``foss/2021a`` ``5.1.3`` | ``foss/2022a`` +``5.1.9`` | ``foss/2023a`` ``5.1.9`` | ``intel/2022a`` diff --git a/docs/version-specific/supported-software/n/NECAT.md b/docs/version-specific/supported-software/n/NECAT.md new file mode 100644 index 000000000..f180227f1 --- /dev/null +++ b/docs/version-specific/supported-software/n/NECAT.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# NECAT + +NECAT is an error correction and de-novo assembly tool for Nanopore long noisy reads.). + +*homepage*: + +version | toolchain +--------|---------- +``0.0.1`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/n/NLopt.md b/docs/version-specific/supported-software/n/NLopt.md index 7f7a71931..36f7ae13a 100644 --- a/docs/version-specific/supported-software/n/NLopt.md +++ b/docs/version-specific/supported-software/n/NLopt.md @@ -32,6 +32,8 @@ version | toolchain ``2.7.1`` | ``GCCcore/11.3.0`` ``2.7.1`` | ``GCCcore/12.2.0`` ``2.7.1`` | ``GCCcore/12.3.0`` +``2.7.1`` | ``GCCcore/13.2.0`` +``2.7.1`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/NanoCaller.md b/docs/version-specific/supported-software/n/NanoCaller.md index 534bd5c91..e36ece694 100644 --- a/docs/version-specific/supported-software/n/NanoCaller.md +++ b/docs/version-specific/supported-software/n/NanoCaller.md @@ -11,6 +11,7 @@ NanoCaller is a computational method that integrates long reads in deep convolu version | toolchain --------|---------- ``3.4.1`` | ``foss/2022a`` +``3.6.0`` | ``foss/2022b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/NextPolish.md b/docs/version-specific/supported-software/n/NextPolish.md new file mode 100644 index 000000000..f6546f640 --- /dev/null +++ b/docs/version-specific/supported-software/n/NextPolish.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# NextPolish + +NextDenovo is a string graph-based de novo assembler for long reads. + +*homepage*: + +version | toolchain +--------|---------- +``1.4.1`` | ``GCCcore/12.3.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/n/NiBabel.md b/docs/version-specific/supported-software/n/NiBabel.md index 495fe24c8..f66c80999 100644 --- a/docs/version-specific/supported-software/n/NiBabel.md +++ b/docs/version-specific/supported-software/n/NiBabel.md @@ -30,6 +30,7 @@ version | versionsuffix | toolchain ``3.2.1`` | | ``fosscuda/2020b`` ``3.2.2`` | | ``foss/2021b`` ``4.0.2`` | | ``foss/2022a`` +``5.2.0`` | | ``gfbf/2022b`` ``5.2.0`` | | ``gfbf/2023a`` diff --git a/docs/version-specific/supported-software/n/Normaliz.md b/docs/version-specific/supported-software/n/Normaliz.md index 6a54be457..38900e9aa 100644 --- a/docs/version-specific/supported-software/n/Normaliz.md +++ b/docs/version-specific/supported-software/n/Normaliz.md @@ -11,6 +11,7 @@ Normaliz is a open source tool for computations in affine monoids, vector config version | toolchain --------|---------- ``3.10.1`` | ``gfbf/2022a`` +``3.10.3`` | ``gfbf/2023b`` ``3.6.3`` | ``intel/2018b`` ``3.7.4`` | ``gompi/2019a`` ``3.8.4`` | ``GCC/8.3.0`` diff --git a/docs/version-specific/supported-software/n/index.md b/docs/version-specific/supported-software/n/index.md index e9f2dd632..d61c52810 100644 --- a/docs/version-specific/supported-software/n/index.md +++ b/docs/version-specific/supported-software/n/index.md @@ -29,6 +29,7 @@ search: * [NanopolishComp](NanopolishComp.md) * [NanoStat](NanoStat.md) * [napari](napari.md) + * [napari-denoiseg](napari-denoiseg.md) * [NASM](NASM.md) * [nauty](nauty.md) * [nbclassic](nbclassic.md) @@ -48,10 +49,12 @@ search: * [ncview](ncview.md) * [nd2reader](nd2reader.md) * [ne](ne.md) + * [NECAT](NECAT.md) * [NECI](NECI.md) * [NEdit](NEdit.md) * [Nek5000](Nek5000.md) * [Nektar++](Nektar++.md) + * [nellie](nellie.md) * [neon](neon.md) * [neptune-client](neptune-client.md) * [Net-core](Net-core.md) @@ -76,6 +79,7 @@ search: * [NewHybrids](NewHybrids.md) * [Nextflow](Nextflow.md) * [NextGenMap](NextGenMap.md) + * [NextPolish](NextPolish.md) * [NEXUS-CL](NEXUS-CL.md) * [nf-core](nf-core.md) * [nf-core-mag](nf-core-mag.md) @@ -94,6 +98,7 @@ search: * [nichenetr](nichenetr.md) * [NIfTI](NIfTI.md) * [nifti2dicom](nifti2dicom.md) + * [nifty](nifty.md) * [Nilearn](Nilearn.md) * [Nim](Nim.md) * [NIMBLE](NIMBLE.md) diff --git a/docs/version-specific/supported-software/n/n2v.md b/docs/version-specific/supported-software/n/n2v.md index 013d07991..b2d341bef 100644 --- a/docs/version-specific/supported-software/n/n2v.md +++ b/docs/version-specific/supported-software/n/n2v.md @@ -12,6 +12,7 @@ version | versionsuffix | toolchain --------|---------------|---------- ``0.3.2`` | ``-CUDA-11.3.1`` | ``foss/2021a`` ``0.3.2`` | | ``foss/2022a`` +``0.3.3`` | | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/nano.md b/docs/version-specific/supported-software/n/nano.md index d5fd08556..456e70438 100644 --- a/docs/version-specific/supported-software/n/nano.md +++ b/docs/version-specific/supported-software/n/nano.md @@ -14,6 +14,7 @@ version | toolchain ``7.0`` | ``GCCcore/11.3.0`` ``7.1`` | ``GCCcore/12.2.0`` ``7.2`` | ``GCCcore/12.2.0`` +``8.1`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/nanopolish.md b/docs/version-specific/supported-software/n/nanopolish.md index 4112228ea..fac499aff 100644 --- a/docs/version-specific/supported-software/n/nanopolish.md +++ b/docs/version-specific/supported-software/n/nanopolish.md @@ -16,6 +16,7 @@ version | versionsuffix | toolchain ``0.13.2`` | ``-Python-3.8.2`` | ``foss/2020a`` ``0.13.3`` | | ``foss/2020b`` ``0.14.0`` | | ``foss/2022a`` +``0.14.0`` | | ``foss/2023a`` ``0.9.2`` | | ``intel/2018a`` diff --git a/docs/version-specific/supported-software/n/napari-denoiseg.md b/docs/version-specific/supported-software/n/napari-denoiseg.md new file mode 100644 index 000000000..e13b0722f --- /dev/null +++ b/docs/version-specific/supported-software/n/napari-denoiseg.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# napari-denoiseg + +A napari plugin performing joint denoising and segmentation of microscopy images using DenoiSeg. + +*homepage*: + +version | toolchain +--------|---------- +``0.0.1`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/n/ncbi-vdb.md b/docs/version-specific/supported-software/n/ncbi-vdb.md index e1eebb95d..ba7805808 100644 --- a/docs/version-specific/supported-software/n/ncbi-vdb.md +++ b/docs/version-specific/supported-software/n/ncbi-vdb.md @@ -30,6 +30,7 @@ version | toolchain ``3.0.2`` | ``gompi/2022a`` ``3.0.5`` | ``gompi/2021a`` ``3.0.5`` | ``gompi/2022b`` +``3.1.1`` | ``gompi/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/ncurses.md b/docs/version-specific/supported-software/n/ncurses.md index 6a91f0e4b..a25e1b8c6 100644 --- a/docs/version-specific/supported-software/n/ncurses.md +++ b/docs/version-specific/supported-software/n/ncurses.md @@ -43,7 +43,6 @@ version | toolchain ``6.1`` | ``GCCcore/8.2.0`` ``6.1`` | ``GCCcore/8.3.0`` ``6.1`` | ``system`` -``6.2`` | ``FCC/4.5.0`` ``6.2`` | ``GCCcore/10.2.0`` ``6.2`` | ``GCCcore/10.3.0`` ``6.2`` | ``GCCcore/11.2.0`` diff --git a/docs/version-specific/supported-software/n/nellie.md b/docs/version-specific/supported-software/n/nellie.md new file mode 100644 index 000000000..4af5df9da --- /dev/null +++ b/docs/version-specific/supported-software/n/nellie.md @@ -0,0 +1,18 @@ +--- +search: + boost: 0.5 +--- +# nellie + +Napari plugin for automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy. + +*homepage*: + +version | versionsuffix | toolchain +--------|---------------|---------- +``0.3.1`` | ``-CUDA-12.1.1`` | ``foss/2023a`` +``0.3.1`` | | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/n/nettle.md b/docs/version-specific/supported-software/n/nettle.md index 8736595e4..3b8e185c5 100644 --- a/docs/version-specific/supported-software/n/nettle.md +++ b/docs/version-specific/supported-software/n/nettle.md @@ -13,6 +13,7 @@ version | toolchain ``3.1.1`` | ``GNU/4.9.3-2.25`` ``3.1.1`` | ``foss/2016a`` ``3.1.1`` | ``intel/2016a`` +``3.10`` | ``GCCcore/13.3.0`` ``3.2`` | ``GCCcore/5.4.0`` ``3.2`` | ``foss/2016b`` ``3.2`` | ``intel/2016b`` diff --git a/docs/version-specific/supported-software/n/nifty.md b/docs/version-specific/supported-software/n/nifty.md new file mode 100644 index 000000000..0dcdab622 --- /dev/null +++ b/docs/version-specific/supported-software/n/nifty.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# nifty + +A nifty library for 2D and 3D image segmentation, graph based segmentation an opt. This library provided building blocks for segmentation algorithms and complex segmentation pipelines. + +*homepage*: + +version | toolchain +--------|---------- +``1.2.1`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/n/nlohmann_json.md b/docs/version-specific/supported-software/n/nlohmann_json.md index aa7689367..08148a5ea 100644 --- a/docs/version-specific/supported-software/n/nlohmann_json.md +++ b/docs/version-specific/supported-software/n/nlohmann_json.md @@ -16,6 +16,7 @@ version | toolchain ``3.11.2`` | ``GCCcore/12.2.0`` ``3.11.2`` | ``GCCcore/12.3.0`` ``3.11.3`` | ``GCCcore/13.2.0`` +``3.11.3`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/nose3.md b/docs/version-specific/supported-software/n/nose3.md index ebce30f94..f4a05ba7d 100644 --- a/docs/version-specific/supported-software/n/nose3.md +++ b/docs/version-specific/supported-software/n/nose3.md @@ -11,6 +11,7 @@ Nose extends unittest to make testing easier. version | toolchain --------|---------- ``1.3.8`` | ``GCCcore/11.3.0`` +``1.3.8`` | ``GCCcore/12.2.0`` ``1.3.8`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/n/nsync.md b/docs/version-specific/supported-software/n/nsync.md index ace5c0e56..2c01a8d9d 100644 --- a/docs/version-specific/supported-software/n/nsync.md +++ b/docs/version-specific/supported-software/n/nsync.md @@ -18,6 +18,7 @@ version | toolchain ``1.25.0`` | ``GCCcore/11.3.0`` ``1.26.0`` | ``GCCcore/12.2.0`` ``1.26.0`` | ``GCCcore/12.3.0`` +``1.29.2`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/numexpr.md b/docs/version-specific/supported-software/n/numexpr.md index 8bc548f61..17cd2aeca 100644 --- a/docs/version-specific/supported-software/n/numexpr.md +++ b/docs/version-specific/supported-software/n/numexpr.md @@ -35,6 +35,7 @@ version | versionsuffix | toolchain ``2.8.1`` | | ``foss/2021a`` ``2.8.1`` | | ``intel/2021a`` ``2.8.4`` | | ``foss/2022a`` +``2.9.0`` | | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/o/OPARI2.md b/docs/version-specific/supported-software/o/OPARI2.md index f2b543df5..70afc1853 100644 --- a/docs/version-specific/supported-software/o/OPARI2.md +++ b/docs/version-specific/supported-software/o/OPARI2.md @@ -21,6 +21,7 @@ version | toolchain ``2.0.7`` | ``GCCcore/12.2.0`` ``2.0.7`` | ``GCCcore/12.3.0`` ``2.0.8`` | ``GCCcore/13.2.0`` +``2.0.8`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/o/ORCA.md b/docs/version-specific/supported-software/o/ORCA.md index ddb83e536..4e4ba2b49 100644 --- a/docs/version-specific/supported-software/o/ORCA.md +++ b/docs/version-specific/supported-software/o/ORCA.md @@ -27,6 +27,10 @@ version | versionsuffix | toolchain ``5.0.3`` | | ``gompi/2021b`` ``5.0.4`` | | ``gompi/2022a`` ``5.0.4`` | | ``gompi/2023a`` +``6.0.0`` | ``-avx2`` | ``foss/2023b`` +``6.0.0`` | | ``foss/2023b`` +``6.0.0`` | ``-avx2`` | ``gompi/2023a`` +``6.0.0`` | | ``gompi/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/o/OSU-Micro-Benchmarks.md b/docs/version-specific/supported-software/o/OSU-Micro-Benchmarks.md index 912d60068..86ddab2fc 100644 --- a/docs/version-specific/supported-software/o/OSU-Micro-Benchmarks.md +++ b/docs/version-specific/supported-software/o/OSU-Micro-Benchmarks.md @@ -27,7 +27,6 @@ version | versionsuffix | toolchain ``5.7`` | | ``gompi/2020b`` ``5.7`` | | ``gompic/2020b`` ``5.7`` | | ``iimpi/2020b`` -``5.7.1`` | | ``ffmpi/4.5.0`` ``5.7.1`` | ``-CUDA-11.3.1`` | ``gompi/2021a`` ``5.7.1`` | | ``gompi/2021a`` ``5.7.1`` | | ``gompi/2021b`` @@ -51,6 +50,8 @@ version | versionsuffix | toolchain ``7.2`` | ``-CUDA-12.1.1`` | ``gompi/2023a`` ``7.2`` | | ``gompi/2023b`` ``7.4`` | | ``gompi/2024.05`` +``7.4`` | | ``gompi/2024a`` +``7.4`` | | ``iimpi/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/o/OTF2.md b/docs/version-specific/supported-software/o/OTF2.md index 36d3583dc..f7df0abd4 100644 --- a/docs/version-specific/supported-software/o/OTF2.md +++ b/docs/version-specific/supported-software/o/OTF2.md @@ -23,6 +23,7 @@ version | toolchain ``3.0.3`` | ``GCCcore/12.2.0`` ``3.0.3`` | ``GCCcore/12.3.0`` ``3.0.3`` | ``GCCcore/13.2.0`` +``3.0.3`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/o/OpenAI-Gym.md b/docs/version-specific/supported-software/o/OpenAI-Gym.md index 03dbb667e..5fb1fafbf 100644 --- a/docs/version-specific/supported-software/o/OpenAI-Gym.md +++ b/docs/version-specific/supported-software/o/OpenAI-Gym.md @@ -13,6 +13,7 @@ version | versionsuffix | toolchain ``0.17.1`` | ``-Python-3.7.4`` | ``foss/2019b`` ``0.21.0`` | | ``foss/2021b`` ``0.26.2`` | | ``foss/2022a`` +``0.26.2`` | | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/o/OpenEXR.md b/docs/version-specific/supported-software/o/OpenEXR.md index d5b687f7b..6a65a9c98 100644 --- a/docs/version-specific/supported-software/o/OpenEXR.md +++ b/docs/version-specific/supported-software/o/OpenEXR.md @@ -23,6 +23,7 @@ version | toolchain ``3.1.5`` | ``GCCcore/12.2.0`` ``3.1.7`` | ``GCCcore/12.3.0`` ``3.2.0`` | ``GCCcore/13.2.0`` +``3.2.4`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/o/OpenFOAM.md b/docs/version-specific/supported-software/o/OpenFOAM.md index 9ceb50608..fce5634df 100644 --- a/docs/version-specific/supported-software/o/OpenFOAM.md +++ b/docs/version-specific/supported-software/o/OpenFOAM.md @@ -10,11 +10,13 @@ OpenFOAM is a free, open source CFD software package. OpenFOAM has an extensive version | versionsuffix | toolchain --------|---------------|---------- +``10`` | ``-20230119-int64`` | ``foss/2022a`` ``10`` | ``-20230119`` | ``foss/2022a`` ``10`` | | ``foss/2022a`` ``10`` | | ``foss/2023a`` ``11`` | | ``foss/2022a`` ``11`` | | ``foss/2023a`` +``12`` | | ``foss/2023a`` ``2.2.2`` | | ``intel/2016a`` ``2.2.2`` | | ``intel/2017a`` ``2.2.2`` | | ``intel/2018a`` @@ -70,6 +72,7 @@ version | versionsuffix | toolchain ``v2206`` | | ``foss/2022a`` ``v2306`` | | ``foss/2022b`` ``v2312`` | | ``foss/2023a`` +``v2406`` | | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/o/OpenForceField-Toolkit.md b/docs/version-specific/supported-software/o/OpenForceField-Toolkit.md new file mode 100644 index 000000000..ce918926d --- /dev/null +++ b/docs/version-specific/supported-software/o/OpenForceField-Toolkit.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# OpenForceField-Toolkit + +The Open Force Field Toolkit provides implementations of the SMIRNOFF format, parameterization engine, and other tools. + +*homepage*: + +version | toolchain +--------|---------- +``0.16.0`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/o/OpenJPEG.md b/docs/version-specific/supported-software/o/OpenJPEG.md index e5b66ff36..5a6c66a52 100644 --- a/docs/version-specific/supported-software/o/OpenJPEG.md +++ b/docs/version-specific/supported-software/o/OpenJPEG.md @@ -23,6 +23,7 @@ version | toolchain ``2.5.0`` | ``GCCcore/12.2.0`` ``2.5.0`` | ``GCCcore/12.3.0`` ``2.5.0`` | ``GCCcore/13.2.0`` +``2.5.2`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/o/OpenMM.md b/docs/version-specific/supported-software/o/OpenMM.md index 53fd85c69..4160311c6 100644 --- a/docs/version-specific/supported-software/o/OpenMM.md +++ b/docs/version-specific/supported-software/o/OpenMM.md @@ -32,6 +32,7 @@ version | versionsuffix | toolchain ``7.7.0`` | | ``foss/2022a`` ``8.0.0`` | ``-CUDA-11.7.0`` | ``foss/2022a`` ``8.0.0`` | | ``foss/2022a`` +``8.0.0`` | ``-CUDA-12.1.1`` | ``foss/2023a`` ``8.0.0`` | | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/o/OpenPGM.md b/docs/version-specific/supported-software/o/OpenPGM.md index 05d8530d2..aa7353fbc 100644 --- a/docs/version-specific/supported-software/o/OpenPGM.md +++ b/docs/version-specific/supported-software/o/OpenPGM.md @@ -17,6 +17,7 @@ version | toolchain ``5.2.122`` | ``GCCcore/12.2.0`` ``5.2.122`` | ``GCCcore/12.3.0`` ``5.2.122`` | ``GCCcore/13.2.0`` +``5.2.122`` | ``GCCcore/13.3.0`` ``5.2.122`` | ``GCCcore/6.4.0`` ``5.2.122`` | ``GCCcore/7.3.0`` ``5.2.122`` | ``GCCcore/8.2.0`` diff --git a/docs/version-specific/supported-software/o/OpenSlide.md b/docs/version-specific/supported-software/o/OpenSlide.md index 662b5d220..b00c86e80 100644 --- a/docs/version-specific/supported-software/o/OpenSlide.md +++ b/docs/version-specific/supported-software/o/OpenSlide.md @@ -13,6 +13,7 @@ version | versionsuffix | toolchain ``3.4.1`` | ``-largefiles`` | ``GCCcore/10.3.0`` ``3.4.1`` | | ``GCCcore/11.2.0`` ``3.4.1`` | ``-largefiles`` | ``GCCcore/11.3.0`` +``3.4.1`` | ``-largefiles`` | ``GCCcore/12.2.0`` ``3.4.1`` | ``-largefiles`` | ``GCCcore/12.3.0`` ``3.4.1`` | ``-largefiles`` | ``GCCcore/8.2.0`` ``3.4.1`` | | ``GCCcore/8.2.0`` diff --git a/docs/version-specific/supported-software/o/Optax.md b/docs/version-specific/supported-software/o/Optax.md index a332a5fa0..e2fe484e6 100644 --- a/docs/version-specific/supported-software/o/Optax.md +++ b/docs/version-specific/supported-software/o/Optax.md @@ -12,6 +12,8 @@ version | versionsuffix | toolchain --------|---------------|---------- ``0.1.7`` | ``-CUDA-11.7.0`` | ``foss/2022a`` ``0.1.7`` | | ``foss/2022a`` +``0.2.2`` | ``-CUDA-12.1.1`` | ``gfbf/2023a`` +``0.2.2`` | | ``gfbf/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/o/Optuna.md b/docs/version-specific/supported-software/o/Optuna.md index 16685e757..18c851a7e 100644 --- a/docs/version-specific/supported-software/o/Optuna.md +++ b/docs/version-specific/supported-software/o/Optuna.md @@ -14,6 +14,7 @@ version | toolchain ``2.9.1`` | ``foss/2021a`` ``3.1.0`` | ``foss/2022a`` ``3.5.0`` | ``foss/2023a`` +``3.6.1`` | ``foss/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/o/index.md b/docs/version-specific/supported-software/o/index.md index cd61ee466..24293b8ca 100644 --- a/docs/version-specific/supported-software/o/index.md +++ b/docs/version-specific/supported-software/o/index.md @@ -22,6 +22,7 @@ search: * [olaFlow](olaFlow.md) * [olego](olego.md) * [OMA](OMA.md) + * [ome-types](ome-types.md) * [OmegaFold](OmegaFold.md) * [OMERO.insight](OMERO.insight.md) * [OMERO.py](OMERO.py.md) @@ -36,6 +37,7 @@ search: * [OPARI2](OPARI2.md) * [Open-Data-Cube-Core](Open-Data-Cube-Core.md) * [OpenAI-Gym](OpenAI-Gym.md) + * [openai-python](openai-python.md) * [OpenBabel](OpenBabel.md) * [OpenBLAS](OpenBLAS.md) * [openCARP](openCARP.md) @@ -50,6 +52,7 @@ search: * [OpenFOAM-Extend](OpenFOAM-Extend.md) * [OpenFold](OpenFold.md) * [OpenForceField](OpenForceField.md) + * [OpenForceField-Toolkit](OpenForceField-Toolkit.md) * [OpenImageIO](OpenImageIO.md) * [OpenJPEG](OpenJPEG.md) * [OpenKIM-API](OpenKIM-API.md) @@ -85,6 +88,7 @@ search: * [ORCA](ORCA.md) * [ORFfinder](ORFfinder.md) * [OrfM](OrfM.md) + * [orjson](orjson.md) * [orthAgogue](orthAgogue.md) * [OrthoFinder](OrthoFinder.md) * [OrthoMCL](OrthoMCL.md) diff --git a/docs/version-specific/supported-software/o/ome-types.md b/docs/version-specific/supported-software/o/ome-types.md new file mode 100644 index 000000000..0705c8415 --- /dev/null +++ b/docs/version-specific/supported-software/o/ome-types.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# ome-types + +ome_types provides a set of python dataclasses and utility functions for parsing the OME-XML format into fully-typed python objects for interactive or programmatic access in python. + +*homepage*: + +version | toolchain +--------|---------- +``0.5.1.post1`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/o/openai-python.md b/docs/version-specific/supported-software/o/openai-python.md new file mode 100644 index 000000000..a894e5b96 --- /dev/null +++ b/docs/version-specific/supported-software/o/openai-python.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# openai-python + +The OpenAI Python library provides convenient access to the OpenAI REST API from any Python 3.7+ application. The library includes type definitions for all request params and response fields, and offers both synchronous and asynchronous clients powered by httpx. + +*homepage*: + +version | toolchain +--------|---------- +``1.30.5`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/o/openslide-python.md b/docs/version-specific/supported-software/o/openslide-python.md index 3cedd6d5d..7c69333cd 100644 --- a/docs/version-specific/supported-software/o/openslide-python.md +++ b/docs/version-specific/supported-software/o/openslide-python.md @@ -14,6 +14,7 @@ version | toolchain ``1.1.2`` | ``GCCcore/10.3.0`` ``1.1.2`` | ``GCCcore/11.2.0`` ``1.2.0`` | ``GCCcore/11.3.0`` +``1.3.1`` | ``GCCcore/12.2.0`` ``1.3.1`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/o/orjson.md b/docs/version-specific/supported-software/o/orjson.md new file mode 100644 index 000000000..2fdac0a73 --- /dev/null +++ b/docs/version-specific/supported-software/o/orjson.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# orjson + +Fast, correct Python JSON library supporting dataclasses, datetimes, and numpy. + +*homepage*: + +version | toolchain +--------|---------- +``3.9.15`` | ``GCCcore/12.3.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/p/PAPI.md b/docs/version-specific/supported-software/p/PAPI.md index b44a52967..57d0c4333 100644 --- a/docs/version-specific/supported-software/p/PAPI.md +++ b/docs/version-specific/supported-software/p/PAPI.md @@ -25,6 +25,7 @@ version | toolchain ``7.0.1`` | ``GCCcore/12.2.0`` ``7.0.1`` | ``GCCcore/12.3.0`` ``7.1.0`` | ``GCCcore/13.2.0`` +``7.1.0`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/PDT.md b/docs/version-specific/supported-software/p/PDT.md index 2fa9ff3c5..5025d3431 100644 --- a/docs/version-specific/supported-software/p/PDT.md +++ b/docs/version-specific/supported-software/p/PDT.md @@ -21,6 +21,7 @@ version | toolchain ``3.25.1`` | ``GCCcore/12.3.0`` ``3.25.1`` | ``GCCcore/9.3.0`` ``3.25.2`` | ``GCCcore/13.2.0`` +``3.25.2`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/PEcAn.md b/docs/version-specific/supported-software/p/PEcAn.md new file mode 100644 index 000000000..dfd26914d --- /dev/null +++ b/docs/version-specific/supported-software/p/PEcAn.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# PEcAn + +Ecosystem science, policy, and management informed by the best available data and models. + +*homepage*: + +version | versionsuffix | toolchain +--------|---------------|---------- +``1.8.0.9000`` | ``-R-4.3.2`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/p/PLY.md b/docs/version-specific/supported-software/p/PLY.md index 1c2a272ec..454936921 100644 --- a/docs/version-specific/supported-software/p/PLY.md +++ b/docs/version-specific/supported-software/p/PLY.md @@ -12,6 +12,8 @@ version | versionsuffix | toolchain --------|---------------|---------- ``3.11`` | | ``GCCcore/12.2.0`` ``3.11`` | | ``GCCcore/12.3.0`` +``3.11`` | | ``GCCcore/13.2.0`` +``3.11`` | | ``GCCcore/13.3.0`` ``3.11`` | ``-Python-3.7.4`` | ``GCCcore/8.3.0`` ``3.11`` | ``-Python-3.6.4`` | ``foss/2018a`` diff --git a/docs/version-specific/supported-software/p/PaStiX.md b/docs/version-specific/supported-software/p/PaStiX.md index e87ac570e..baa957edc 100644 --- a/docs/version-specific/supported-software/p/PaStiX.md +++ b/docs/version-specific/supported-software/p/PaStiX.md @@ -11,6 +11,8 @@ PaStiX (Parallel Sparse matriX package) is a scientific library that provides a version | toolchain --------|---------- ``5.2.3`` | ``foss/2017b`` +``6.3.2`` | ``foss/2023b`` +``6.3.2`` | ``intel/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/ParMETIS.md b/docs/version-specific/supported-software/p/ParMETIS.md index fd13f73fc..d514e73a9 100644 --- a/docs/version-specific/supported-software/p/ParMETIS.md +++ b/docs/version-specific/supported-software/p/ParMETIS.md @@ -26,12 +26,14 @@ version | toolchain ``4.0.3`` | ``gompi/2022a`` ``4.0.3`` | ``gompi/2022b`` ``4.0.3`` | ``gompi/2023a`` +``4.0.3`` | ``gompi/2023b`` ``4.0.3`` | ``iimpi/2019a`` ``4.0.3`` | ``iimpi/2019b`` ``4.0.3`` | ``iimpi/2020a`` ``4.0.3`` | ``iimpi/2020b`` ``4.0.3`` | ``iimpi/2021a`` ``4.0.3`` | ``iimpi/2021b`` +``4.0.3`` | ``iimpi/2023b`` ``4.0.3`` | ``intel/2016a`` ``4.0.3`` | ``intel/2016b`` ``4.0.3`` | ``intel/2017a`` diff --git a/docs/version-specific/supported-software/p/ParaView.md b/docs/version-specific/supported-software/p/ParaView.md index 05d0d4a31..a53c11db3 100644 --- a/docs/version-specific/supported-software/p/ParaView.md +++ b/docs/version-specific/supported-software/p/ParaView.md @@ -21,6 +21,7 @@ version | versionsuffix | toolchain ``5.11.1`` | ``-CUDA-12.2.0`` | ``foss/2022b`` ``5.11.1`` | | ``foss/2022b`` ``5.11.2`` | | ``foss/2023a`` +``5.12.0`` | ``-Qt5`` | ``foss/2023b`` ``5.12.0`` | | ``foss/2023b`` ``5.2.0`` | ``-mpi`` | ``foss/2016b`` ``5.2.0`` | ``-mpi`` | ``intel/2017a`` diff --git a/docs/version-specific/supported-software/p/Perl-bundle-CPAN.md b/docs/version-specific/supported-software/p/Perl-bundle-CPAN.md index 0b9ad7406..9885e764d 100644 --- a/docs/version-specific/supported-software/p/Perl-bundle-CPAN.md +++ b/docs/version-specific/supported-software/p/Perl-bundle-CPAN.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``5.36.1`` | ``GCCcore/12.3.0`` ``5.38.0`` | ``GCCcore/13.2.0`` +``5.38.2`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/Perl.md b/docs/version-specific/supported-software/p/Perl.md index 0ec442d00..d2d420543 100644 --- a/docs/version-specific/supported-software/p/Perl.md +++ b/docs/version-specific/supported-software/p/Perl.md @@ -47,7 +47,6 @@ version | versionsuffix | toolchain ``5.30.2`` | | ``GCCcore/9.3.0`` ``5.32.0`` | ``-minimal`` | ``GCCcore/10.2.0`` ``5.32.0`` | | ``GCCcore/10.2.0`` -``5.32.1`` | | ``FCC/4.5.0`` ``5.32.1`` | ``-minimal`` | ``GCCcore/10.3.0`` ``5.32.1`` | | ``GCCcore/10.3.0`` ``5.34.0`` | ``-minimal`` | ``GCCcore/11.2.0`` diff --git a/docs/version-specific/supported-software/p/Pillow-SIMD.md b/docs/version-specific/supported-software/p/Pillow-SIMD.md index ad8dddcd2..e6b64963a 100644 --- a/docs/version-specific/supported-software/p/Pillow-SIMD.md +++ b/docs/version-specific/supported-software/p/Pillow-SIMD.md @@ -10,6 +10,7 @@ Pillow is the 'friendly PIL fork' by Alex Clark and Contributors. PIL is the Py version | versionsuffix | toolchain --------|---------------|---------- +``10.4.0`` | | ``GCCcore/13.3.0`` ``5.0.0`` | ``-Python-3.6.4`` | ``foss/2018a`` ``5.0.0`` | ``-Python-3.6.4`` | ``intel/2018a`` ``5.3.0.post0`` | ``-Python-3.6.6`` | ``foss/2018b`` diff --git a/docs/version-specific/supported-software/p/Pint.md b/docs/version-specific/supported-software/p/Pint.md index 7525a699a..0e798e38f 100644 --- a/docs/version-specific/supported-software/p/Pint.md +++ b/docs/version-specific/supported-software/p/Pint.md @@ -15,6 +15,7 @@ version | versionsuffix | toolchain ``0.20.1`` | | ``GCCcore/10.3.0`` ``0.22`` | | ``GCCcore/11.3.0`` ``0.23`` | | ``GCCcore/12.3.0`` +``0.24`` | | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/Platypus-Opt.md b/docs/version-specific/supported-software/p/Platypus-Opt.md index f53b5c96a..7e38cd4c5 100644 --- a/docs/version-specific/supported-software/p/Platypus-Opt.md +++ b/docs/version-specific/supported-software/p/Platypus-Opt.md @@ -11,6 +11,7 @@ Platypus is a framework for evolutionary computing in Python with a focus on mu version | toolchain --------|---------- ``1.1.0`` | ``foss/2022a`` +``1.2.0`` | ``foss/2022b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/PostgreSQL.md b/docs/version-specific/supported-software/p/PostgreSQL.md index 1be6be855..2671803e4 100644 --- a/docs/version-specific/supported-software/p/PostgreSQL.md +++ b/docs/version-specific/supported-software/p/PostgreSQL.md @@ -26,6 +26,7 @@ version | versionsuffix | toolchain ``15.2`` | | ``GCCcore/12.2.0`` ``16.1`` | | ``GCCcore/12.3.0`` ``16.1`` | | ``GCCcore/13.2.0`` +``16.4`` | | ``GCCcore/13.3.0`` ``9.4.7`` | ``-Python-2.7.11`` | ``intel/2016a`` ``9.5.2`` | ``-Python-2.7.11`` | ``intel/2016a`` ``9.6.0`` | ``-Python-2.7.12`` | ``intel/2016b`` diff --git a/docs/version-specific/supported-software/p/PretextMap.md b/docs/version-specific/supported-software/p/PretextMap.md new file mode 100644 index 000000000..956694398 --- /dev/null +++ b/docs/version-specific/supported-software/p/PretextMap.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# PretextMap + +Paired REad TEXTure Mapper. Converts SAM formatted read pairs into genome contact maps. + +*homepage*: + +version | toolchain +--------|---------- +``0.1.9`` | ``GCCcore/12.3.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/p/PyAEDT.md b/docs/version-specific/supported-software/p/PyAEDT.md index 863a329a6..052caa5ab 100644 --- a/docs/version-specific/supported-software/p/PyAEDT.md +++ b/docs/version-specific/supported-software/p/PyAEDT.md @@ -11,6 +11,7 @@ PyAEDT is a Python library that interacts directly with the Ansys Electronics De version | toolchain --------|---------- ``0.8.7`` | ``GCCcore/12.3.0`` +``0.9.9`` | ``gfbf/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/PyBEL.md b/docs/version-specific/supported-software/p/PyBEL.md new file mode 100644 index 000000000..b2264396c --- /dev/null +++ b/docs/version-specific/supported-software/p/PyBEL.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# PyBEL + +PyBEL is a pure Python software package that parses BEL (Biological Expression Language) documents, validates their semantics, and facilitates data interchange between common formats and database systems like JSON, CSV, Excel, SQL, CX, and Neo4J. + +*homepage*: + +version | toolchain +--------|---------- +``0.15.5`` | ``gfbf/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/p/PyCharm.md b/docs/version-specific/supported-software/p/PyCharm.md index c94b5eec1..318c59c87 100644 --- a/docs/version-specific/supported-software/p/PyCharm.md +++ b/docs/version-specific/supported-software/p/PyCharm.md @@ -15,6 +15,7 @@ version | toolchain ``2021.1.1`` | ``system`` ``2022.2.2`` | ``system`` ``2022.3.2`` | ``system`` +``2024.1.6`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/PyRosetta.md b/docs/version-specific/supported-software/p/PyRosetta.md index eadf29720..4f8d541ef 100644 --- a/docs/version-specific/supported-software/p/PyRosetta.md +++ b/docs/version-specific/supported-software/p/PyRosetta.md @@ -11,6 +11,7 @@ PyRosetta is an interactive Python-based interface to the powerful Rosetta molec version | versionsuffix | toolchain --------|---------------|---------- ``4.release-292`` | ``-Python-3.7.4`` | ``GCCcore/8.3.0`` +``4.release-384`` | | ``gompi/2022a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/PyTorch-Geometric.md b/docs/version-specific/supported-software/p/PyTorch-Geometric.md index b7db777d9..b229cda3b 100644 --- a/docs/version-specific/supported-software/p/PyTorch-Geometric.md +++ b/docs/version-specific/supported-software/p/PyTorch-Geometric.md @@ -20,6 +20,7 @@ version | versionsuffix | toolchain ``2.1.0`` | ``-PyTorch-1.12.0-CUDA-11.7.0`` | ``foss/2022a`` ``2.1.0`` | ``-PyTorch-1.12.0`` | ``foss/2022a`` ``2.5.0`` | ``-PyTorch-2.1.2-CUDA-12.1.1`` | ``foss/2023a`` +``2.5.0`` | ``-PyTorch-2.1.2`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/PyWavelets.md b/docs/version-specific/supported-software/p/PyWavelets.md index 531b68a49..f55ef4ded 100644 --- a/docs/version-specific/supported-software/p/PyWavelets.md +++ b/docs/version-specific/supported-software/p/PyWavelets.md @@ -12,6 +12,7 @@ version | versionsuffix | toolchain --------|---------------|---------- ``1.1.1`` | ``-Python-3.7.4`` | ``intel/2019b`` ``1.1.1`` | | ``intelcuda/2020b`` +``1.7.0`` | | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/PyYAML.md b/docs/version-specific/supported-software/p/PyYAML.md index e15d7be3d..8e6c0792b 100644 --- a/docs/version-specific/supported-software/p/PyYAML.md +++ b/docs/version-specific/supported-software/p/PyYAML.md @@ -44,6 +44,7 @@ version | versionsuffix | toolchain ``6.0`` | | ``GCCcore/12.2.0`` ``6.0`` | | ``GCCcore/12.3.0`` ``6.0.1`` | | ``GCCcore/13.2.0`` +``6.0.2`` | | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/Pygments.md b/docs/version-specific/supported-software/p/Pygments.md index 27cf2a194..9a81f4e21 100644 --- a/docs/version-specific/supported-software/p/Pygments.md +++ b/docs/version-specific/supported-software/p/Pygments.md @@ -12,6 +12,7 @@ version | versionsuffix | toolchain --------|---------------|---------- ``2.1.3`` | ``-Python-2.7.11`` | ``foss/2016a`` ``2.1.3`` | ``-Python-3.5.1`` | ``foss/2016a`` +``2.18.0`` | | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/Pylint.md b/docs/version-specific/supported-software/p/Pylint.md index bb3a523e8..5c4a2104d 100644 --- a/docs/version-specific/supported-software/p/Pylint.md +++ b/docs/version-specific/supported-software/p/Pylint.md @@ -17,6 +17,7 @@ version | versionsuffix | toolchain ``1.9.5`` | ``-Python-2.7.16`` | ``GCCcore/8.3.0`` ``2.17.4`` | | ``GCCcore/12.2.0`` ``2.7.4`` | | ``GCCcore/10.2.0`` +``3.2.5`` | | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/Pyomo.md b/docs/version-specific/supported-software/p/Pyomo.md index 44c7a5d32..f4fd3c842 100644 --- a/docs/version-specific/supported-software/p/Pyomo.md +++ b/docs/version-specific/supported-software/p/Pyomo.md @@ -16,6 +16,7 @@ version | versionsuffix | toolchain ``6.0.1`` | | ``foss/2021a`` ``6.4.2`` | | ``foss/2022a`` ``6.5.0`` | | ``foss/2022b`` +``6.7.3`` | | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/Python-bundle-PyPI.md b/docs/version-specific/supported-software/p/Python-bundle-PyPI.md index 0f8cbe8b3..edda26dcf 100644 --- a/docs/version-specific/supported-software/p/Python-bundle-PyPI.md +++ b/docs/version-specific/supported-software/p/Python-bundle-PyPI.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``2023.06`` | ``GCCcore/12.3.0`` ``2023.10`` | ``GCCcore/13.2.0`` +``2024.06`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/index.md b/docs/version-specific/supported-software/p/index.md index 7ca3438cb..bbca880e8 100644 --- a/docs/version-specific/supported-software/p/index.md +++ b/docs/version-specific/supported-software/p/index.md @@ -79,6 +79,7 @@ search: * [PDT](PDT.md) * [peakdetect](peakdetect.md) * [PEAR](PEAR.md) + * [PEcAn](PEcAn.md) * [PennCNV](PennCNV.md) * [PEPT](PEPT.md) * [Percolator](Percolator.md) @@ -210,6 +211,7 @@ search: * [PREQUAL](PREQUAL.md) * [preseq](preseq.md) * [presto](presto.md) + * [PretextMap](PretextMap.md) * [pretty-yaml](pretty-yaml.md) * [primecount](primecount.md) * [primecountpy](primecountpy.md) @@ -272,6 +274,7 @@ search: * [PyAPS3](PyAPS3.md) * [PyAV](PyAV.md) * [pybedtools](pybedtools.md) + * [PyBEL](PyBEL.md) * [PyBerny](PyBerny.md) * [pyBigWig](pyBigWig.md) * [pybind11](pybind11.md) @@ -342,6 +345,7 @@ search: * [pymatgen](pymatgen.md) * [pymatgen-db](pymatgen-db.md) * [pymbar](pymbar.md) + * [pyMBE](pyMBE.md) * [PyMC](PyMC.md) * [PyMC3](PyMC3.md) * [pymca](pymca.md) @@ -392,6 +396,7 @@ search: * [pyspoa](pyspoa.md) * [pysqlite](pysqlite.md) * [PyStan](PyStan.md) + * [pystencils](pystencils.md) * [pysteps](pysteps.md) * [pystran](pystran.md) * [PyTables](PyTables.md) @@ -408,10 +413,12 @@ search: * [pythermalcomfort](pythermalcomfort.md) * [PYTHIA](PYTHIA.md) * [Python](Python.md) + * [python-blosc](python-blosc.md) * [Python-bundle](Python-bundle.md) * [Python-bundle-PyPI](Python-bundle-PyPI.md) * [python-casacore](python-casacore.md) * [python-docx](python-docx.md) + * [python-elf](python-elf.md) * [python-hl7](python-hl7.md) * [python-igraph](python-igraph.md) * [python-irodsclient](python-irodsclient.md) diff --git a/docs/version-specific/supported-software/p/packmol.md b/docs/version-specific/supported-software/p/packmol.md index 1ee1db50a..323811ae0 100644 --- a/docs/version-specific/supported-software/p/packmol.md +++ b/docs/version-specific/supported-software/p/packmol.md @@ -13,6 +13,7 @@ version | toolchain ``16.103`` | ``intel/2016a`` ``18.013`` | ``foss/2018a`` ``18.013`` | ``intel/2018a`` +``20.14.4`` | ``GCC/12.3.0`` ``20.2.2`` | ``GCC/10.2.0`` ``v20.2.2`` | ``iccifort/2020.1.217`` diff --git a/docs/version-specific/supported-software/p/pagmo.md b/docs/version-specific/supported-software/p/pagmo.md index 44a5bd7fa..1271397df 100644 --- a/docs/version-specific/supported-software/p/pagmo.md +++ b/docs/version-specific/supported-software/p/pagmo.md @@ -14,6 +14,7 @@ version | toolchain ``2.18.0`` | ``foss/2021a`` ``2.18.0`` | ``foss/2021b`` ``2.18.0`` | ``foss/2022a`` +``2.19.0`` | ``gfbf/2022b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/parallel.md b/docs/version-specific/supported-software/p/parallel.md index 1cd547f63..d737ae113 100644 --- a/docs/version-specific/supported-software/p/parallel.md +++ b/docs/version-specific/supported-software/p/parallel.md @@ -33,6 +33,7 @@ version | toolchain ``20230722`` | ``GCCcore/12.2.0`` ``20230722`` | ``GCCcore/12.3.0`` ``20240322`` | ``GCCcore/13.2.0`` +``20240722`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/parasail.md b/docs/version-specific/supported-software/p/parasail.md index afc07b309..11372997f 100644 --- a/docs/version-specific/supported-software/p/parasail.md +++ b/docs/version-specific/supported-software/p/parasail.md @@ -22,6 +22,7 @@ version | toolchain ``2.6`` | ``GCC/11.3.0`` ``2.6.2`` | ``GCC/12.2.0`` ``2.6.2`` | ``GCC/12.3.0`` +``2.6.2`` | ``GCC/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/pixman.md b/docs/version-specific/supported-software/p/pixman.md index 34fbf2ae1..48610d694 100644 --- a/docs/version-specific/supported-software/p/pixman.md +++ b/docs/version-specific/supported-software/p/pixman.md @@ -28,6 +28,7 @@ version | toolchain ``0.42.2`` | ``GCCcore/12.2.0`` ``0.42.2`` | ``GCCcore/12.3.0`` ``0.42.2`` | ``GCCcore/13.2.0`` +``0.43.4`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/pkgconfig.md b/docs/version-specific/supported-software/p/pkgconfig.md index 072bf3b74..4a58ba67c 100644 --- a/docs/version-specific/supported-software/p/pkgconfig.md +++ b/docs/version-specific/supported-software/p/pkgconfig.md @@ -47,6 +47,7 @@ version | versionsuffix | toolchain ``1.5.5`` | ``-python`` | ``GCCcore/12.2.0`` ``1.5.5`` | ``-python`` | ``GCCcore/12.3.0`` ``1.5.5`` | ``-python`` | ``GCCcore/13.2.0`` +``1.5.5`` | ``-python`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/pod5-file-format.md b/docs/version-specific/supported-software/p/pod5-file-format.md index 1b6a97cfe..0b4d69ff0 100644 --- a/docs/version-specific/supported-software/p/pod5-file-format.md +++ b/docs/version-specific/supported-software/p/pod5-file-format.md @@ -11,6 +11,7 @@ POD5 is a file format for storing nanopore dna data in an easily accessible way. version | toolchain --------|---------- ``0.1.8`` | ``foss/2022a`` +``0.3.10`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/poetry.md b/docs/version-specific/supported-software/p/poetry.md index 931a03316..59e011c8a 100644 --- a/docs/version-specific/supported-software/p/poetry.md +++ b/docs/version-specific/supported-software/p/poetry.md @@ -15,6 +15,7 @@ version | versionsuffix | toolchain ``1.5.1`` | | ``GCCcore/12.3.0`` ``1.6.1`` | | ``GCCcore/13.2.0`` ``1.7.1`` | | ``GCCcore/12.3.0`` +``1.8.3`` | | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/popt.md b/docs/version-specific/supported-software/p/popt.md index f482d5d29..bf643f46f 100644 --- a/docs/version-specific/supported-software/p/popt.md +++ b/docs/version-specific/supported-software/p/popt.md @@ -14,6 +14,7 @@ version | toolchain ``1.16`` | ``GCC/10.2.0`` ``1.16`` | ``GCC/4.9.2`` ``1.16`` | ``system`` +``1.19`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/pretty-yaml.md b/docs/version-specific/supported-software/p/pretty-yaml.md index 86e8861f4..a5e41c3fb 100644 --- a/docs/version-specific/supported-software/p/pretty-yaml.md +++ b/docs/version-specific/supported-software/p/pretty-yaml.md @@ -14,6 +14,7 @@ version | toolchain ``20.4.0`` | ``GCCcore/9.3.0`` ``21.10.1`` | ``GCCcore/10.3.0`` ``23.9.5`` | ``GCCcore/11.3.0`` +``24.7.0`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/primecount.md b/docs/version-specific/supported-software/p/primecount.md index b0436a803..74a91abb8 100644 --- a/docs/version-specific/supported-software/p/primecount.md +++ b/docs/version-specific/supported-software/p/primecount.md @@ -10,6 +10,7 @@ primecount is a command-line program and C/C++ library that counts the number of version | toolchain --------|---------- +``7.14`` | ``GCCcore/13.2.0`` ``7.9`` | ``GCCcore/11.3.0`` diff --git a/docs/version-specific/supported-software/p/primecountpy.md b/docs/version-specific/supported-software/p/primecountpy.md index 61d7af7cb..1810c7e1b 100644 --- a/docs/version-specific/supported-software/p/primecountpy.md +++ b/docs/version-specific/supported-software/p/primecountpy.md @@ -11,6 +11,7 @@ This is a Cython interface to the C++ library primecount. version | toolchain --------|---------- ``0.1.0`` | ``GCCcore/11.3.0`` +``0.1.0`` | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/prompt-toolkit.md b/docs/version-specific/supported-software/p/prompt-toolkit.md index c56a638ea..1ae4ca1c0 100644 --- a/docs/version-specific/supported-software/p/prompt-toolkit.md +++ b/docs/version-specific/supported-software/p/prompt-toolkit.md @@ -17,6 +17,7 @@ version | versionsuffix | toolchain ``1.0.6`` | ``-Python-2.7.12`` | ``intel/2016b`` ``1.0.6`` | ``-Python-3.5.2`` | ``intel/2016b`` ``3.0.36`` | | ``GCCcore/12.2.0`` +``3.0.36`` | | ``GCCcore/12.3.0`` ``3.0.36`` | | ``GCCcore/13.2.0`` diff --git a/docs/version-specific/supported-software/p/psycopg.md b/docs/version-specific/supported-software/p/psycopg.md index 8d5ef7226..973c1a648 100644 --- a/docs/version-specific/supported-software/p/psycopg.md +++ b/docs/version-specific/supported-software/p/psycopg.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``3.1.18`` | ``GCCcore/12.2.0`` ``3.1.18`` | ``GCCcore/13.2.0`` +``3.2.1`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/pyBigWig.md b/docs/version-specific/supported-software/p/pyBigWig.md index c9c8d4a3b..eb47edad0 100644 --- a/docs/version-specific/supported-software/p/pyBigWig.md +++ b/docs/version-specific/supported-software/p/pyBigWig.md @@ -18,7 +18,7 @@ version | versionsuffix | toolchain ``0.3.18`` | | ``foss/2021b`` ``0.3.18`` | | ``foss/2022a`` ``0.3.22`` | | ``foss/2022b`` -``0.3.22`` | | ``foss/2023a`` +``0.3.22`` | | ``gfbf/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/pyGenomeTracks.md b/docs/version-specific/supported-software/p/pyGenomeTracks.md index 5484ca22a..174a26176 100644 --- a/docs/version-specific/supported-software/p/pyGenomeTracks.md +++ b/docs/version-specific/supported-software/p/pyGenomeTracks.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``3.7`` | ``foss/2021b`` ``3.8`` | ``foss/2022a`` +``3.9`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/pyMBE.md b/docs/version-specific/supported-software/p/pyMBE.md new file mode 100644 index 000000000..65b18a2a4 --- /dev/null +++ b/docs/version-specific/supported-software/p/pyMBE.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# pyMBE + +pyMBE: the Python-based Molecule Builder for ESPResSo pyMBE provides tools to facilitate building up molecules with complex architectures in the Molecular Dynamics software ESPResSo. + +*homepage*: <> + +version | toolchain +--------|---------- +``0.8.0`` | ``foss/2023b`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/p/pybind11.md b/docs/version-specific/supported-software/p/pybind11.md index 0ecdefc00..7c1886e07 100644 --- a/docs/version-specific/supported-software/p/pybind11.md +++ b/docs/version-specific/supported-software/p/pybind11.md @@ -13,6 +13,7 @@ version | versionsuffix | toolchain ``2.10.3`` | | ``GCCcore/12.2.0`` ``2.11.1`` | | ``GCCcore/12.3.0`` ``2.11.1`` | | ``GCCcore/13.2.0`` +``2.12.0`` | | ``GCC/13.3.0`` ``2.2.4`` | ``-Python-3.6.4`` | ``foss/2018a`` ``2.2.4`` | ``-Python-3.6.6`` | ``intel/2018b`` ``2.4.3`` | ``-Python-3.7.4`` | ``GCCcore/8.3.0`` diff --git a/docs/version-specific/supported-software/p/pycocotools.md b/docs/version-specific/supported-software/p/pycocotools.md index c9a21c06e..5c9350fa0 100644 --- a/docs/version-specific/supported-software/p/pycocotools.md +++ b/docs/version-specific/supported-software/p/pycocotools.md @@ -18,6 +18,7 @@ version | versionsuffix | toolchain ``2.0.2`` | ``-Python-3.8.2`` | ``fosscuda/2020a`` ``2.0.4`` | | ``foss/2021a`` ``2.0.6`` | | ``foss/2022a`` +``2.0.7`` | | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/pydantic.md b/docs/version-specific/supported-software/p/pydantic.md index a723c9b46..1d69b7f81 100644 --- a/docs/version-specific/supported-software/p/pydantic.md +++ b/docs/version-specific/supported-software/p/pydantic.md @@ -17,6 +17,7 @@ version | versionsuffix | toolchain ``2.5.3`` | | ``GCCcore/12.2.0`` ``2.5.3`` | | ``GCCcore/12.3.0`` ``2.6.4`` | | ``GCCcore/13.2.0`` +``2.7.4`` | | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/pydicom.md b/docs/version-specific/supported-software/p/pydicom.md index b06a99919..6da97f6df 100644 --- a/docs/version-specific/supported-software/p/pydicom.md +++ b/docs/version-specific/supported-software/p/pydicom.md @@ -18,6 +18,7 @@ version | versionsuffix | toolchain ``2.2.2`` | | ``GCCcore/10.3.0`` ``2.2.2`` | | ``GCCcore/11.2.0`` ``2.3.0`` | | ``GCCcore/11.3.0`` +``2.4.4`` | | ``GCCcore/12.2.0`` ``2.4.4`` | | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/p/pydot.md b/docs/version-specific/supported-software/p/pydot.md index f1167d8ae..42da7c799 100644 --- a/docs/version-specific/supported-software/p/pydot.md +++ b/docs/version-specific/supported-software/p/pydot.md @@ -16,6 +16,7 @@ version | toolchain ``1.4.2`` | ``GCCcore/10.3.0`` ``1.4.2`` | ``GCCcore/11.2.0`` ``1.4.2`` | ``GCCcore/11.3.0`` +``2.0.0`` | ``GCCcore/12.2.0`` ``2.0.0`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/p/pyfasta.md b/docs/version-specific/supported-software/p/pyfasta.md index 99da34003..5fe4ddca5 100644 --- a/docs/version-specific/supported-software/p/pyfasta.md +++ b/docs/version-specific/supported-software/p/pyfasta.md @@ -11,6 +11,7 @@ fast, memory-efficient, pythonic (and command-line) access to fasta sequence fil version | toolchain --------|---------- ``0.5.2`` | ``foss/2020b`` +``0.5.2`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/pygmo.md b/docs/version-specific/supported-software/p/pygmo.md index 210c8eb7e..52fd97781 100644 --- a/docs/version-specific/supported-software/p/pygmo.md +++ b/docs/version-specific/supported-software/p/pygmo.md @@ -14,6 +14,7 @@ version | toolchain ``2.18.0`` | ``foss/2021a`` ``2.18.0`` | ``foss/2021b`` ``2.18.0`` | ``foss/2022a`` +``2.19.5`` | ``gfbf/2022b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/pyperf.md b/docs/version-specific/supported-software/p/pyperf.md index 00881cc20..1d84335f7 100644 --- a/docs/version-specific/supported-software/p/pyperf.md +++ b/docs/version-specific/supported-software/p/pyperf.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``2.5.0`` | ``GCCcore/11.3.0`` ``2.6.0`` | ``GCCcore/12.2.0`` +``2.7.0`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/pyseer.md b/docs/version-specific/supported-software/p/pyseer.md index 38155eb80..dbf072a9b 100644 --- a/docs/version-specific/supported-software/p/pyseer.md +++ b/docs/version-specific/supported-software/p/pyseer.md @@ -11,6 +11,7 @@ pyseer was first written a python reimplementation of seer, which was written in version | toolchain --------|---------- ``1.3.11`` | ``foss/2022b`` +``1.3.12`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/pyspoa.md b/docs/version-specific/supported-software/p/pyspoa.md index 8862e9e5f..3d436cad8 100644 --- a/docs/version-specific/supported-software/p/pyspoa.md +++ b/docs/version-specific/supported-software/p/pyspoa.md @@ -17,6 +17,7 @@ version | versionsuffix | toolchain ``0.0.9`` | | ``GCC/11.3.0`` ``0.0.9`` | | ``GCC/12.2.0`` ``0.2.1`` | | ``GCC/12.3.0`` +``0.2.1`` | | ``GCC/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/pystencils.md b/docs/version-specific/supported-software/p/pystencils.md new file mode 100644 index 000000000..a8467eb79 --- /dev/null +++ b/docs/version-specific/supported-software/p/pystencils.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# pystencils + +pystencils uses sympy to define stencil operations, that can be executed on numpy arrays + +*homepage*: + +version | toolchain +--------|---------- +``1.3.4`` | ``gfbf/2023b`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/p/pysteps.md b/docs/version-specific/supported-software/p/pysteps.md index e51daa4d9..d1222a49d 100644 --- a/docs/version-specific/supported-software/p/pysteps.md +++ b/docs/version-specific/supported-software/p/pysteps.md @@ -10,6 +10,7 @@ Pysteps is an open-source and community-driven Python library for probabilistic version | toolchain --------|---------- +``1.10.0`` | ``foss/2023a`` ``1.7.1`` | ``foss/2022a`` diff --git a/docs/version-specific/supported-software/p/python-blosc.md b/docs/version-specific/supported-software/p/python-blosc.md new file mode 100644 index 000000000..fcec493e0 --- /dev/null +++ b/docs/version-specific/supported-software/p/python-blosc.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# python-blosc + +A Python wrapper for the extremely fast Blosc compression library. + +*homepage*: + +version | toolchain +--------|---------- +``1.11.0`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/p/python-elf.md b/docs/version-specific/supported-software/p/python-elf.md new file mode 100644 index 000000000..335f27f88 --- /dev/null +++ b/docs/version-specific/supported-software/p/python-elf.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# python-elf + +Utils and convenience functions for large-scale bio-image analysis. + +*homepage*: + +version | toolchain +--------|---------- +``0.5.1`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/p/python-louvain.md b/docs/version-specific/supported-software/p/python-louvain.md index f9d4d0910..cbf5f8367 100644 --- a/docs/version-specific/supported-software/p/python-louvain.md +++ b/docs/version-specific/supported-software/p/python-louvain.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``0.15`` | ``foss/2021b`` ``0.16`` | ``foss/2022a`` +``0.16`` | ``foss/2022b`` ``0.16`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/p/python-parasail.md b/docs/version-specific/supported-software/p/python-parasail.md index b0bc23e7c..23ea9104c 100644 --- a/docs/version-specific/supported-software/p/python-parasail.md +++ b/docs/version-specific/supported-software/p/python-parasail.md @@ -24,6 +24,7 @@ version | versionsuffix | toolchain ``1.3.3`` | | ``foss/2022a`` ``1.3.4`` | | ``foss/2022b`` ``1.3.4`` | | ``foss/2023a`` +``1.3.4`` | | ``foss/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/q/Qhull.md b/docs/version-specific/supported-software/q/Qhull.md index 76ffe2721..209388c48 100644 --- a/docs/version-specific/supported-software/q/Qhull.md +++ b/docs/version-specific/supported-software/q/Qhull.md @@ -29,6 +29,7 @@ version | toolchain ``2020.2`` | ``GCCcore/12.2.0`` ``2020.2`` | ``GCCcore/12.3.0`` ``2020.2`` | ``GCCcore/13.2.0`` +``2020.2`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/q/Qualimap.md b/docs/version-specific/supported-software/q/Qualimap.md index 5d8cdad76..df96a2eb9 100644 --- a/docs/version-specific/supported-software/q/Qualimap.md +++ b/docs/version-specific/supported-software/q/Qualimap.md @@ -13,6 +13,7 @@ version | versionsuffix | toolchain ``2.2.1`` | ``-R-3.6.0`` | ``foss/2019a`` ``2.2.1`` | ``-R-4.0.3`` | ``foss/2020b`` ``2.2.1`` | ``-R-4.1.2`` | ``foss/2021b`` +``2.3`` | ``-R-4.2.2`` | ``foss/2022b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/q/QuantumESPRESSO.md b/docs/version-specific/supported-software/q/QuantumESPRESSO.md index 3186bf746..6a61aa5b9 100644 --- a/docs/version-specific/supported-software/q/QuantumESPRESSO.md +++ b/docs/version-specific/supported-software/q/QuantumESPRESSO.md @@ -45,6 +45,8 @@ version | versionsuffix | toolchain ``7.2`` | | ``intel/2022b`` ``7.3`` | | ``foss/2023a`` ``7.3`` | | ``intel/2023a`` +``7.3.1`` | | ``foss/2023a`` +``7.3.1`` | | ``intel/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/q/Qwt.md b/docs/version-specific/supported-software/q/Qwt.md index dba030e8a..77a76701b 100644 --- a/docs/version-specific/supported-software/q/Qwt.md +++ b/docs/version-specific/supported-software/q/Qwt.md @@ -21,6 +21,7 @@ version | toolchain ``6.2.0`` | ``GCCcore/10.3.0`` ``6.2.0`` | ``GCCcore/11.2.0`` ``6.2.0`` | ``GCCcore/12.2.0`` +``6.3.0`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/q/qnorm.md b/docs/version-specific/supported-software/q/qnorm.md index f24c0fcb2..763432e0e 100644 --- a/docs/version-specific/supported-software/q/qnorm.md +++ b/docs/version-specific/supported-software/q/qnorm.md @@ -11,6 +11,7 @@ Fast-ish (and correct!) quantile normalization in Python version | toolchain --------|---------- ``0.8.1`` | ``foss/2022a`` +``0.8.1`` | ``foss/2022b`` ``0.8.1`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/r/R-bundle-CRAN.md b/docs/version-specific/supported-software/r/R-bundle-CRAN.md index 51d33eecc..c9cf72c67 100644 --- a/docs/version-specific/supported-software/r/R-bundle-CRAN.md +++ b/docs/version-specific/supported-software/r/R-bundle-CRAN.md @@ -11,6 +11,7 @@ Bundle of R packages from CRAN version | toolchain --------|---------- ``2023.12`` | ``foss/2023a`` +``2024.06`` | ``foss/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/r/R.md b/docs/version-specific/supported-software/r/R.md index 27e4f5f09..8c1b42388 100644 --- a/docs/version-specific/supported-software/r/R.md +++ b/docs/version-specific/supported-software/r/R.md @@ -57,6 +57,7 @@ version | versionsuffix | toolchain ``4.2.2`` | | ``foss/2022b`` ``4.3.2`` | | ``gfbf/2023a`` ``4.3.3`` | | ``gfbf/2023b`` +``4.4.1`` | | ``gfbf/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/r/RDKit.md b/docs/version-specific/supported-software/r/RDKit.md index 74cc980e3..58516eb34 100644 --- a/docs/version-specific/supported-software/r/RDKit.md +++ b/docs/version-specific/supported-software/r/RDKit.md @@ -19,6 +19,7 @@ version | versionsuffix | toolchain ``2022.03.5`` | | ``foss/2021b`` ``2022.09.4`` | | ``foss/2022a`` ``2023.03.3`` | | ``foss/2021a`` +``2024.03.3`` | | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/r/RStudio-Server.md b/docs/version-specific/supported-software/r/RStudio-Server.md index 76c7966dd..b44ade72e 100644 --- a/docs/version-specific/supported-software/r/RStudio-Server.md +++ b/docs/version-specific/supported-software/r/RStudio-Server.md @@ -16,6 +16,7 @@ version | versionsuffix | toolchain ``1.3.959`` | ``-Java-11-R-4.0.0`` | ``foss/2020a`` ``1.4.1717`` | ``-Java-11-R-4.1.0`` | ``foss/2021a`` ``2022.07.2+576`` | ``-Java-11-R-4.2.1`` | ``foss/2022a`` +``2023.09.1+494`` | ``-Java-11-R-4.3.2`` | ``foss/2023a`` ``2023.12.1+402`` | ``-Java-11-R-4.3.3`` | ``gfbf/2023b`` diff --git a/docs/version-specific/supported-software/r/RapidJSON.md b/docs/version-specific/supported-software/r/RapidJSON.md index a2a647e54..eea0241fe 100644 --- a/docs/version-specific/supported-software/r/RapidJSON.md +++ b/docs/version-specific/supported-software/r/RapidJSON.md @@ -11,6 +11,7 @@ A fast JSON parser/generator for C++ with both SAX/DOM style API version | toolchain --------|---------- ``1.1.0-20230928`` | ``GCCcore/12.3.0`` +``1.1.0-20240409`` | ``GCCcore/13.2.0`` ``1.1.0`` | ``GCCcore/10.2.0`` ``1.1.0`` | ``GCCcore/10.3.0`` ``1.1.0`` | ``GCCcore/11.2.0`` diff --git a/docs/version-specific/supported-software/r/Raptor.md b/docs/version-specific/supported-software/r/Raptor.md index 07fcbe9a1..0820bbbf0 100644 --- a/docs/version-specific/supported-software/r/Raptor.md +++ b/docs/version-specific/supported-software/r/Raptor.md @@ -11,6 +11,7 @@ Set of parsers and serializers that generate Resource Description Framework (RDF version | toolchain --------|---------- ``2.0.16`` | ``GCCcore/10.3.0`` +``2.0.16`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/r/Rasqal.md b/docs/version-specific/supported-software/r/Rasqal.md new file mode 100644 index 000000000..815c8bdc0 --- /dev/null +++ b/docs/version-specific/supported-software/r/Rasqal.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# Rasqal + +A library handling RDF query syntaxes, construction and execution + +*homepage*: + +version | toolchain +--------|---------- +``0.9.33`` | ``GCCcore/12.3.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/r/Ray-project.md b/docs/version-specific/supported-software/r/Ray-project.md index 7f00219f0..da98ba60b 100644 --- a/docs/version-specific/supported-software/r/Ray-project.md +++ b/docs/version-specific/supported-software/r/Ray-project.md @@ -16,6 +16,7 @@ version | versionsuffix | toolchain ``1.13.0`` | | ``foss/2021b`` ``1.9.2`` | | ``foss/2021b`` ``2.2.0`` | | ``foss/2022a`` +``2.9.1`` | | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/r/ReFrame.md b/docs/version-specific/supported-software/r/ReFrame.md index 59d63fb6d..9838fcacd 100644 --- a/docs/version-specific/supported-software/r/ReFrame.md +++ b/docs/version-specific/supported-software/r/ReFrame.md @@ -37,6 +37,8 @@ version | toolchain ``4.2.0`` | ``system`` ``4.3.2`` | ``system`` ``4.3.3`` | ``system`` +``4.6.2`` | ``GCCcore/12.3.0`` +``4.6.2`` | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/r/Redland.md b/docs/version-specific/supported-software/r/Redland.md new file mode 100644 index 000000000..19730e41e --- /dev/null +++ b/docs/version-specific/supported-software/r/Redland.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# Redland + +Redland is a set of free software C libraries that provide support for the Resource Description Framework (RDF). + +*homepage*: + +version | toolchain +--------|---------- +``1.0.17`` | ``GCC/12.3.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/r/Regenie.md b/docs/version-specific/supported-software/r/Regenie.md new file mode 100644 index 000000000..c0ac22967 --- /dev/null +++ b/docs/version-specific/supported-software/r/Regenie.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# Regenie + +Regenie is a C++ program for whole genome regression modelling of large genome-wide association studies. It is developed and supported by a team of scientists at the Regeneron Genetics Center. + +*homepage*: + +version | toolchain +--------|---------- +``3.1.2`` | ``GCC/11.2.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/r/Rust.md b/docs/version-specific/supported-software/r/Rust.md index e6f1ec033..b060ab4cf 100644 --- a/docs/version-specific/supported-software/r/Rust.md +++ b/docs/version-specific/supported-software/r/Rust.md @@ -37,6 +37,7 @@ version | toolchain ``1.75.0`` | ``GCCcore/12.3.0`` ``1.76.0`` | ``GCCcore/13.2.0`` ``1.78.0`` | ``GCCcore/13.3.0`` +``1.79.0`` | ``GCCcore/13.3.0`` ``1.8.0`` | ``foss/2016a`` diff --git a/docs/version-specific/supported-software/r/index.md b/docs/version-specific/supported-software/r/index.md index 1ebaf0ed0..695e47b6c 100644 --- a/docs/version-specific/supported-software/r/index.md +++ b/docs/version-specific/supported-software/r/index.md @@ -27,6 +27,7 @@ search: * [rampart](rampart.md) * [randfold](randfold.md) * [randrproto](randrproto.md) + * [rankwidth](rankwidth.md) * [rapidcsv](rapidcsv.md) * [RapidJSON](RapidJSON.md) * [rapidNJ](rapidNJ.md) @@ -35,6 +36,7 @@ search: * [Raptor](Raptor.md) * [Rascaf](Rascaf.md) * [RASPA2](RASPA2.md) + * [Rasqal](Rasqal.md) * [rasterio](rasterio.md) * [rasterstats](rasterstats.md) * [Ratatosk](Ratatosk.md) @@ -62,8 +64,10 @@ search: * [Red](Red.md) * [Redis](Redis.md) * [redis-py](redis-py.md) + * [Redland](Redland.md) * [Redundans](Redundans.md) * [ReFrame](ReFrame.md) + * [Regenie](Regenie.md) * [regionmask](regionmask.md) * [RegTools](RegTools.md) * [Relate](Relate.md) @@ -103,6 +107,7 @@ search: * [RLCard](RLCard.md) * [rmarkdown](rmarkdown.md) * [Rmath](Rmath.md) + * [rMATS-long](rMATS-long.md) * [rMATS-turbo](rMATS-turbo.md) * [RMBlast](RMBlast.md) * [RNA-Bloom](RNA-Bloom.md) diff --git a/docs/version-specific/supported-software/r/rMATS-long.md b/docs/version-specific/supported-software/r/rMATS-long.md new file mode 100644 index 000000000..043bd8a38 --- /dev/null +++ b/docs/version-specific/supported-software/r/rMATS-long.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# rMATS-long + +rMATS-long is a collection of tools for analyzing long-read data. + +*homepage*: + +version | versionsuffix | toolchain +--------|---------------|---------- +``1.0.0-20240502`` | ``-R-4.3.2`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/r/rankwidth.md b/docs/version-specific/supported-software/r/rankwidth.md new file mode 100644 index 000000000..3faed75db --- /dev/null +++ b/docs/version-specific/supported-software/r/rankwidth.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# rankwidth + +rw calculates rank-width and rank-decompositions. It is based on ideas from "Computing rank-width exactly" by Sang-il Oum, "Sopra una formula numerica" by Ernesto Pascal, "Generation of a Vector from the Lexicographical Index" by B.P. Buckles and M. Lybanon and "Fast additions on masked integers" by Michael D. Adams and David S. Wise. + +*homepage*: + +version | toolchain +--------|---------- +``0.9`` | ``foss/2023b`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/r/rapidNJ.md b/docs/version-specific/supported-software/r/rapidNJ.md index 261161004..753c4a82e 100644 --- a/docs/version-specific/supported-software/r/rapidNJ.md +++ b/docs/version-specific/supported-software/r/rapidNJ.md @@ -11,6 +11,7 @@ RapidNJ is an algorithmic engineered implementation of canonical neighbour-join version | toolchain --------|---------- ``2.3.3`` | ``GCCcore/11.3.0`` +``2.3.3`` | ``GCCcore/12.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/r/redis-py.md b/docs/version-specific/supported-software/r/redis-py.md index e48458ea3..474d0e16a 100644 --- a/docs/version-specific/supported-software/r/redis-py.md +++ b/docs/version-specific/supported-software/r/redis-py.md @@ -14,6 +14,7 @@ version | toolchain ``4.3.3`` | ``foss/2021b`` ``4.5.1`` | ``foss/2022a`` ``5.0.1`` | ``GCCcore/12.3.0`` +``5.0.9`` | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/r/regionmask.md b/docs/version-specific/supported-software/r/regionmask.md index d94a8f5f9..c1c9378a0 100644 --- a/docs/version-specific/supported-software/r/regionmask.md +++ b/docs/version-specific/supported-software/r/regionmask.md @@ -11,6 +11,7 @@ regionmask creates masks of geographical regions. It determines to which geograp version | versionsuffix | toolchain --------|---------------|---------- ``0.10.0`` | | ``foss/2022b`` +``0.12.1`` | | ``foss/2023a`` ``0.9.0`` | ``-Python-3.8.2`` | ``foss/2020a`` ``0.9.0`` | | ``foss/2021b`` ``0.9.0`` | | ``foss/2022a`` diff --git a/docs/version-specific/supported-software/r/rjags.md b/docs/version-specific/supported-software/r/rjags.md index e436bffd3..5618f18d3 100644 --- a/docs/version-specific/supported-software/r/rjags.md +++ b/docs/version-specific/supported-software/r/rjags.md @@ -22,6 +22,7 @@ version | versionsuffix | toolchain ``4-12`` | ``-R-4.1.2`` | ``foss/2021b`` ``4-13`` | ``-R-4.2.1`` | ``foss/2022a`` ``4-13`` | ``-R-4.2.2`` | ``foss/2022b`` +``4-15`` | ``-R-4.3.2`` | ``foss/2023a`` ``4-6`` | ``-R-3.4.0`` | ``intel/2017a`` ``4-6`` | ``-R-3.4.3`` | ``intel/2017b`` ``4-8`` | ``-R-3.5.1`` | ``foss/2018b`` diff --git a/docs/version-specific/supported-software/r/rpmrebuild.md b/docs/version-specific/supported-software/r/rpmrebuild.md index 849d0d395..70d520bce 100644 --- a/docs/version-specific/supported-software/r/rpmrebuild.md +++ b/docs/version-specific/supported-software/r/rpmrebuild.md @@ -11,6 +11,7 @@ rpmrebuild is a tool to build an RPM file from a package that has already been version | toolchain --------|---------- ``2.11`` | ``system`` +``2.18`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/r/ruamel.yaml.md b/docs/version-specific/supported-software/r/ruamel.yaml.md index 9e3065da9..2b7d36fe1 100644 --- a/docs/version-specific/supported-software/r/ruamel.yaml.md +++ b/docs/version-specific/supported-software/r/ruamel.yaml.md @@ -16,6 +16,7 @@ version | toolchain ``0.17.21`` | ``GCCcore/12.2.0`` ``0.17.32`` | ``GCCcore/12.3.0`` ``0.18.6`` | ``GCCcore/13.2.0`` +``0.18.6`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/SCENICplus.md b/docs/version-specific/supported-software/s/SCENICplus.md new file mode 100644 index 000000000..1131a4e4f --- /dev/null +++ b/docs/version-specific/supported-software/s/SCENICplus.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# SCENICplus + +SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) and single-cell chromatin accessibility (scATAC-seq) data. + +*homepage*: + +version | toolchain +--------|---------- +``1.0a1-20240513`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/s/SCOTCH.md b/docs/version-specific/supported-software/s/SCOTCH.md index e577ea9f7..5ecbdc33f 100644 --- a/docs/version-specific/supported-software/s/SCOTCH.md +++ b/docs/version-specific/supported-software/s/SCOTCH.md @@ -43,6 +43,7 @@ version | versionsuffix | toolchain ``7.0.3`` | | ``gompi/2022b`` ``7.0.3`` | | ``gompi/2023a`` ``7.0.4`` | | ``gompi/2023b`` +``7.0.4`` | | ``iimpi/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/SDL2.md b/docs/version-specific/supported-software/s/SDL2.md index 6f1a0701d..07d551977 100644 --- a/docs/version-specific/supported-software/s/SDL2.md +++ b/docs/version-specific/supported-software/s/SDL2.md @@ -27,6 +27,7 @@ version | toolchain ``2.26.3`` | ``GCCcore/12.2.0`` ``2.28.2`` | ``GCCcore/12.3.0`` ``2.28.5`` | ``GCCcore/13.2.0`` +``2.30.6`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/SHAP.md b/docs/version-specific/supported-software/s/SHAP.md index 97e366899..b92da2e80 100644 --- a/docs/version-specific/supported-software/s/SHAP.md +++ b/docs/version-specific/supported-software/s/SHAP.md @@ -14,6 +14,7 @@ version | versionsuffix | toolchain ``0.41.0`` | | ``foss/2022a`` ``0.42.1`` | ``-Python-3.7.4`` | ``foss/2019b`` ``0.42.1`` | | ``foss/2022a`` +``0.43.0`` | | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/SIONlib.md b/docs/version-specific/supported-software/s/SIONlib.md index b0d9b4fb2..e563ca051 100644 --- a/docs/version-specific/supported-software/s/SIONlib.md +++ b/docs/version-specific/supported-software/s/SIONlib.md @@ -24,6 +24,7 @@ version | versionsuffix | toolchain ``1.7.7`` | ``-tools`` | ``GCCcore/12.2.0`` ``1.7.7`` | ``-tools`` | ``GCCcore/12.3.0`` ``1.7.7`` | ``-tools`` | ``GCCcore/13.2.0`` +``1.7.7`` | ``-tools`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/SIP.md b/docs/version-specific/supported-software/s/SIP.md index c4a34afbb..93d73d9ff 100644 --- a/docs/version-specific/supported-software/s/SIP.md +++ b/docs/version-specific/supported-software/s/SIP.md @@ -25,6 +25,7 @@ version | versionsuffix | toolchain ``4.19.8`` | ``-Python-2.7.14`` | ``intel/2018a`` ``4.19.8`` | ``-Python-3.6.4`` | ``intel/2018a`` ``6.8.1`` | | ``GCCcore/12.3.0`` +``6.8.3`` | | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/SIRIUS.md b/docs/version-specific/supported-software/s/SIRIUS.md new file mode 100644 index 000000000..bca622d08 --- /dev/null +++ b/docs/version-specific/supported-software/s/SIRIUS.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# SIRIUS + +SIRIUS is a domain specific library for electronic structure calculations. It implements pseudopotential plane wave (PP-PW) and full potential linearized augmented plane wave (FP-LAPW) methods. + +*homepage*: + +version | toolchain +--------|---------- +``7.5.2`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/s/SKA2.md b/docs/version-specific/supported-software/s/SKA2.md new file mode 100644 index 000000000..c6ceae98b --- /dev/null +++ b/docs/version-specific/supported-software/s/SKA2.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# SKA2 + +Split k-mer analysis (version 2) uses exact matching of split k-mer sequences to align closely related sequences, typically small haploid genomes such as bacteria and viruses. + +*homepage*: + +version | toolchain +--------|---------- +``0.3.7`` | ``GCCcore/12.2.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/s/SOCI.md b/docs/version-specific/supported-software/s/SOCI.md index a1c066f25..03fd7f98a 100644 --- a/docs/version-specific/supported-software/s/SOCI.md +++ b/docs/version-specific/supported-software/s/SOCI.md @@ -16,6 +16,7 @@ version | toolchain ``4.0.3`` | ``GCC/11.2.0`` ``4.0.3`` | ``GCC/11.3.0`` ``4.0.3`` | ``GCC/12.2.0`` +``4.0.3`` | ``GCC/12.3.0`` ``4.0.3`` | ``GCC/13.2.0`` diff --git a/docs/version-specific/supported-software/s/SRA-Toolkit.md b/docs/version-specific/supported-software/s/SRA-Toolkit.md index ed26e49cc..29b5a13f7 100644 --- a/docs/version-specific/supported-software/s/SRA-Toolkit.md +++ b/docs/version-specific/supported-software/s/SRA-Toolkit.md @@ -28,6 +28,7 @@ version | versionsuffix | toolchain ``3.0.3`` | | ``gompi/2022a`` ``3.0.5`` | | ``gompi/2021a`` ``3.0.5`` | | ``gompi/2022b`` +``3.1.1`` | | ``gompi/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/STAR.md b/docs/version-specific/supported-software/s/STAR.md index d95cbf49e..89319b2a2 100644 --- a/docs/version-specific/supported-software/s/STAR.md +++ b/docs/version-specific/supported-software/s/STAR.md @@ -34,6 +34,7 @@ version | toolchain ``2.7.11a`` | ``GCC/12.3.0`` ``2.7.11b`` | ``GCC/12.3.0`` ``2.7.11b`` | ``GCC/13.2.0`` +``2.7.11b_alpha_2024-02-09`` | ``GCC/12.3.0`` ``2.7.1a`` | ``GCC/8.2.0-2.31.1`` ``2.7.1a`` | ``foss/2018b`` ``2.7.2b`` | ``GCC/8.3.0`` diff --git a/docs/version-specific/supported-software/s/STREAM.md b/docs/version-specific/supported-software/s/STREAM.md index 9eb6997c2..ac9d9d19c 100644 --- a/docs/version-specific/supported-software/s/STREAM.md +++ b/docs/version-specific/supported-software/s/STREAM.md @@ -18,6 +18,7 @@ version | toolchain ``5.10`` | ``intel/2016b`` ``5.10`` | ``intel/2018b`` ``5.10`` | ``intel-compilers/2022.2.1`` +``5.10`` | ``intel-compilers/2024.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/STRUMPACK.md b/docs/version-specific/supported-software/s/STRUMPACK.md index 1d36b1754..f377b738a 100644 --- a/docs/version-specific/supported-software/s/STRUMPACK.md +++ b/docs/version-specific/supported-software/s/STRUMPACK.md @@ -12,6 +12,8 @@ version | toolchain --------|---------- ``6.1.0`` | ``foss/2020b`` ``6.1.0`` | ``intel/2020b`` +``7.1.0`` | ``foss/2023b`` +``7.1.0`` | ``intel/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/SVDSS2.md b/docs/version-specific/supported-software/s/SVDSS2.md new file mode 100644 index 000000000..e74a05feb --- /dev/null +++ b/docs/version-specific/supported-software/s/SVDSS2.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# SVDSS2 + +Improved structural variant discovery in accurate long reads using sample-specific strings (SFS). + +*homepage*: + +version | toolchain +--------|---------- +``2.0.0-alpha.3`` | ``GCC/12.3.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/s/Safetensors.md b/docs/version-specific/supported-software/s/Safetensors.md index 3307d7315..596ddd7bd 100644 --- a/docs/version-specific/supported-software/s/Safetensors.md +++ b/docs/version-specific/supported-software/s/Safetensors.md @@ -12,6 +12,7 @@ version | versionsuffix | toolchain --------|---------------|---------- ``0.3.1`` | ``-CUDA-11.7.0`` | ``foss/2022a`` ``0.3.1`` | | ``foss/2022a`` +``0.4.3`` | | ``gfbf/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/Sagemath.md b/docs/version-specific/supported-software/s/Sagemath.md new file mode 100644 index 000000000..18034ee1d --- /dev/null +++ b/docs/version-specific/supported-software/s/Sagemath.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# Sagemath + +Sage is open source mathematical software released under the GNU General Public Licence GPLv2+, and includes packages that have compatible software licenses. People all around the globe have contributed to the development of Sage. Full documentation is available online. + +*homepage*: + +version | toolchain +--------|---------- +``10.4`` | ``foss/2023b`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/s/Salmon.md b/docs/version-specific/supported-software/s/Salmon.md index ef0a7d298..04abcf1c5 100644 --- a/docs/version-specific/supported-software/s/Salmon.md +++ b/docs/version-specific/supported-software/s/Salmon.md @@ -20,6 +20,7 @@ version | versionsuffix | toolchain ``1.0.0`` | | ``gompi/2019b`` ``1.1.0`` | | ``gompi/2019b`` ``1.10.1`` | | ``GCC/12.2.0`` +``1.10.3`` | | ``GCC/12.3.0`` ``1.2.0`` | | ``gompi/2019b`` ``1.3.0`` | | ``gompi/2020a`` ``1.4.0`` | | ``GCC/11.2.0`` diff --git a/docs/version-specific/supported-software/s/ScaLAPACK.md b/docs/version-specific/supported-software/s/ScaLAPACK.md index 4205f5d35..538c99486 100644 --- a/docs/version-specific/supported-software/s/ScaLAPACK.md +++ b/docs/version-specific/supported-software/s/ScaLAPACK.md @@ -48,6 +48,7 @@ version | versionsuffix | toolchain ``2.1.0`` | | ``gompic/2020b`` ``2.1.0`` | ``-bf`` | ``iimpi/2020b`` ``2.2`` | ``-amd`` | ``gompi/2020a`` +``2.2.0`` | ``-fb`` | ``gmpich/2024.06`` ``2.2.0`` | ``-fb`` | ``gompi/2022.05`` ``2.2.0`` | ``-fb`` | ``gompi/2022.10`` ``2.2.0`` | ``-fb`` | ``gompi/2022a`` @@ -56,6 +57,7 @@ version | versionsuffix | toolchain ``2.2.0`` | ``-fb`` | ``gompi/2023a`` ``2.2.0`` | ``-fb`` | ``gompi/2023b`` ``2.2.0`` | ``-fb`` | ``gompi/2024.05`` +``2.2.0`` | ``-fb`` | ``gompi/2024a`` ``2.2.0`` | ``-fb`` | ``nvompi/2022.07`` diff --git a/docs/version-specific/supported-software/s/SciPy-bundle.md b/docs/version-specific/supported-software/s/SciPy-bundle.md index 6eaa74cea..aaf6a34f0 100644 --- a/docs/version-specific/supported-software/s/SciPy-bundle.md +++ b/docs/version-specific/supported-software/s/SciPy-bundle.md @@ -49,6 +49,8 @@ version | versionsuffix | toolchain ``2023.07`` | | ``iimkl/2023a`` ``2023.11`` | | ``gfbf/2023.09`` ``2023.11`` | | ``gfbf/2023b`` +``2024.05`` | | ``gfbf/2024.05`` +``2024.05`` | | ``gfbf/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/Score-P.md b/docs/version-specific/supported-software/s/Score-P.md index c8293f953..d5864a236 100644 --- a/docs/version-specific/supported-software/s/Score-P.md +++ b/docs/version-specific/supported-software/s/Score-P.md @@ -32,6 +32,8 @@ version | versionsuffix | toolchain ``8.3`` | | ``gompi/2022b`` ``8.4`` | ``-CUDA-12.4.0`` | ``gompi/2023b`` ``8.4`` | | ``gompi/2023b`` +``8.4`` | ``-CUDA-12.6.0`` | ``gompi/2024a`` +``8.4`` | | ``gompi/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/SentencePiece.md b/docs/version-specific/supported-software/s/SentencePiece.md index f9201a4f2..17fa18a42 100644 --- a/docs/version-specific/supported-software/s/SentencePiece.md +++ b/docs/version-specific/supported-software/s/SentencePiece.md @@ -17,6 +17,7 @@ version | versionsuffix | toolchain ``0.1.97`` | | ``GCC/11.3.0`` ``0.1.99`` | | ``GCC/12.2.0`` ``0.2.0`` | | ``GCC/12.3.0`` +``0.2.0`` | | ``GCC/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/SeqKit.md b/docs/version-specific/supported-software/s/SeqKit.md index 366e35ac5..bbf0bd1cf 100644 --- a/docs/version-specific/supported-software/s/SeqKit.md +++ b/docs/version-specific/supported-software/s/SeqKit.md @@ -15,6 +15,7 @@ version | toolchain ``2.1.0`` | ``system`` ``2.2.0`` | ``system`` ``2.3.1`` | ``system`` +``2.8.2`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/SharedMeatAxe.md b/docs/version-specific/supported-software/s/SharedMeatAxe.md new file mode 100644 index 000000000..420a515d7 --- /dev/null +++ b/docs/version-specific/supported-software/s/SharedMeatAxe.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# SharedMeatAxe + +This is an autotoolized shared library version of C MeatAxe 2.4.24, a set of programs for computing with modular representations. + +*homepage*: + +version | toolchain +--------|---------- +``1.0.1`` | ``GCC/13.2.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/f/FCC.md b/docs/version-specific/supported-software/s/Single-cell-python-bundle.md similarity index 84% rename from docs/version-specific/supported-software/f/FCC.md rename to docs/version-specific/supported-software/s/Single-cell-python-bundle.md index 5f93dd5d7..be7ece8af 100644 --- a/docs/version-specific/supported-software/f/FCC.md +++ b/docs/version-specific/supported-software/s/Single-cell-python-bundle.md @@ -2,15 +2,15 @@ search: boost: 0.5 --- -# FCC +# Single-cell-python-bundle -Fujitsu Compiler based compiler toolchain. +Bundle of tools for single-cell sequence analysis. -*homepage*: <(none)> +*homepage*: version | toolchain --------|---------- -``4.5.0`` | ``system`` +``2024.02`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/SingleM.md b/docs/version-specific/supported-software/s/SingleM.md index 4241eac23..bb3fb2959 100644 --- a/docs/version-specific/supported-software/s/SingleM.md +++ b/docs/version-specific/supported-software/s/SingleM.md @@ -11,6 +11,7 @@ SingleM is a tool to find the abundances of discrete operational taxonomic units version | versionsuffix | toolchain --------|---------------|---------- ``0.12.1`` | ``-Python-2.7.15`` | ``intel/2019a`` +``0.16.0`` | | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/SpFFT.md b/docs/version-specific/supported-software/s/SpFFT.md new file mode 100644 index 000000000..6d358c86c --- /dev/null +++ b/docs/version-specific/supported-software/s/SpFFT.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# SpFFT + +Sparse 3D FFT library with MPI, OpenMP, CUDA and ROCm support. + +*homepage*: + +version | toolchain +--------|---------- +``1.1.0`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/s/Sphinx-RTD-Theme.md b/docs/version-specific/supported-software/s/Sphinx-RTD-Theme.md index d701a6c7c..5daaf639f 100644 --- a/docs/version-specific/supported-software/s/Sphinx-RTD-Theme.md +++ b/docs/version-specific/supported-software/s/Sphinx-RTD-Theme.md @@ -11,6 +11,8 @@ Sphinx theme designed to provide a great reader experience for documentation us version | toolchain --------|---------- ``1.1.1`` | ``GCCcore/10.2.0`` +``2.0.0`` | ``GCCcore/12.3.0`` +``2.0.0`` | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/Stable-Baselines3.md b/docs/version-specific/supported-software/s/Stable-Baselines3.md new file mode 100644 index 000000000..e1c5c3477 --- /dev/null +++ b/docs/version-specific/supported-software/s/Stable-Baselines3.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# Stable-Baselines3 + +Stable Baselines3 (SB3) is a set of reliable implementations of reinforcement learning algorithms in PyTorch. + +*homepage*: + +version | toolchain +--------|---------- +``2.3.2`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/s/Stack.md b/docs/version-specific/supported-software/s/Stack.md index 2c7205f68..c3be4219d 100644 --- a/docs/version-specific/supported-software/s/Stack.md +++ b/docs/version-specific/supported-software/s/Stack.md @@ -13,6 +13,7 @@ version | versionsuffix | toolchain ``2.11.1`` | ``-x86_64`` | ``system`` ``2.13.1`` | ``-x86_64`` | ``system`` ``2.3.3`` | ``-x86_64`` | ``system`` +``3.1.1`` | ``-x86_64`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/SuiteSparse.md b/docs/version-specific/supported-software/s/SuiteSparse.md index 31710fb3a..8f8cca447 100644 --- a/docs/version-specific/supported-software/s/SuiteSparse.md +++ b/docs/version-specific/supported-software/s/SuiteSparse.md @@ -53,6 +53,7 @@ version | versionsuffix | toolchain ``5.8.1`` | ``-METIS-5.1.0`` | ``foss/2020b`` ``5.8.1`` | ``-METIS-5.1.0`` | ``intel/2020b`` ``7.1.0`` | | ``foss/2023a`` +``7.7.0`` | ``-METIS-5.1.0`` | ``foss/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/SuperLU.md b/docs/version-specific/supported-software/s/SuperLU.md index 58992e981..07fa050da 100644 --- a/docs/version-specific/supported-software/s/SuperLU.md +++ b/docs/version-specific/supported-software/s/SuperLU.md @@ -21,6 +21,7 @@ version | toolchain ``5.3.0`` | ``foss/2022a`` ``5.3.0`` | ``intel/2020b`` ``5.3.0`` | ``intel/2022a`` +``6.0.1`` | ``foss/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/SuperLU_DIST.md b/docs/version-specific/supported-software/s/SuperLU_DIST.md index 362a16347..5e58ed234 100644 --- a/docs/version-specific/supported-software/s/SuperLU_DIST.md +++ b/docs/version-specific/supported-software/s/SuperLU_DIST.md @@ -16,6 +16,7 @@ version | versionsuffix | toolchain ``8.1.0`` | | ``foss/2022a`` ``8.1.2`` | | ``foss/2022b`` ``8.1.2`` | | ``foss/2023a`` +``8.2.1`` | | ``foss/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/index.md b/docs/version-specific/supported-software/s/index.md index ad8969841..359cccc9e 100644 --- a/docs/version-specific/supported-software/s/index.md +++ b/docs/version-specific/supported-software/s/index.md @@ -15,6 +15,7 @@ search: * [safestringlib](safestringlib.md) * [Safetensors](Safetensors.md) * [SAGE](SAGE.md) + * [Sagemath](Sagemath.md) * [Sailfish](Sailfish.md) * [SALib](SALib.md) * [Salmon](Salmon.md) @@ -41,8 +42,11 @@ search: * [scanpy](scanpy.md) * [scArches](scArches.md) * [scCODA](scCODA.md) + * [scCustomize](scCustomize.md) * [sceasy](sceasy.md) * [SCENIC](SCENIC.md) + * [SCENICplus](SCENICplus.md) + * [scFEA](scFEA.md) * [scGeneFit](scGeneFit.md) * [SCGid](SCGid.md) * [scGSVA](scGSVA.md) @@ -95,6 +99,7 @@ search: * [SDL2_ttf](SDL2_ttf.md) * [SDL_image](SDL_image.md) * [SDSL](SDSL.md) + * [sdsl-lite](sdsl-lite.md) * [Seaborn](Seaborn.md) * [SEACells](SEACells.md) * [SearchGUI](SearchGUI.md) @@ -139,6 +144,7 @@ search: * [SHAPEIT](SHAPEIT.md) * [SHAPEIT4](SHAPEIT4.md) * [Shapely](Shapely.md) + * [SharedMeatAxe](SharedMeatAxe.md) * [sharutils](sharutils.md) * [Shasta](Shasta.md) * [ShengBTE](ShengBTE.md) @@ -166,15 +172,19 @@ search: * [simpy](simpy.md) * [Simstrat](Simstrat.md) * [SimVascular](SimVascular.md) + * [Single-cell-python-bundle](Single-cell-python-bundle.md) * [SingleM](SingleM.md) * [Singular](Singular.md) * [sinto](sinto.md) * [SiNVICT](SiNVICT.md) * [SIONlib](SIONlib.md) * [SIP](SIP.md) + * [SIRIUS](SIRIUS.md) + * [sirocco](sirocco.md) * [siscone](siscone.md) * [SISSO](SISSO.md) * [SISSO++](SISSO++.md) + * [SKA2](SKA2.md) * [SKESA](SKESA.md) * [sketchmap](sketchmap.md) * [skewer](skewer.md) @@ -247,12 +257,14 @@ search: * [speech_tools](speech_tools.md) * [SPEI](SPEI.md) * [spektral](spektral.md) + * [SpFFT](SpFFT.md) * [spglib](spglib.md) * [spglib-python](spglib-python.md) * [Sphinx](Sphinx.md) * [Sphinx-RTD-Theme](Sphinx-RTD-Theme.md) * [SpiceyPy](SpiceyPy.md) * [SpiecEasi](SpiecEasi.md) + * [spla](spla.md) * [SplAdder](SplAdder.md) * [SPLASH](SPLASH.md) * [SpliceMap](SpliceMap.md) @@ -276,6 +288,7 @@ search: * [SSN](SSN.md) * [SSPACE_Basic](SSPACE_Basic.md) * [SSW](SSW.md) + * [Stable-Baselines3](Stable-Baselines3.md) * [STACEY](STACEY.md) * [Stack](Stack.md) * [Stacks](Stacks.md) @@ -306,6 +319,7 @@ search: * [STRUMPACK](STRUMPACK.md) * [suave](suave.md) * [SuAVE-biomat](SuAVE-biomat.md) + * [submitit](submitit.md) * [Subread](Subread.md) * [subset-bam](subset-bam.md) * [subunit](subunit.md) @@ -326,6 +340,7 @@ search: * [SVclone](SVclone.md) * [SVDetect](SVDetect.md) * [SVDquest](SVDquest.md) + * [SVDSS2](SVDSS2.md) * [SVG](SVG.md) * [SVIM](SVIM.md) * [svist4get](svist4get.md) diff --git a/docs/version-specific/supported-software/s/scArches.md b/docs/version-specific/supported-software/s/scArches.md index 77284bcb6..4999976ca 100644 --- a/docs/version-specific/supported-software/s/scArches.md +++ b/docs/version-specific/supported-software/s/scArches.md @@ -12,6 +12,7 @@ version | versionsuffix | toolchain --------|---------------|---------- ``0.5.6`` | ``-CUDA-11.3.1`` | ``foss/2021a`` ``0.5.6`` | | ``foss/2021a`` +``0.6.1`` | | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/scCustomize.md b/docs/version-specific/supported-software/s/scCustomize.md new file mode 100644 index 000000000..9f134a084 --- /dev/null +++ b/docs/version-specific/supported-software/s/scCustomize.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# scCustomize + +Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using 'R'. + +*homepage*: + +version | versionsuffix | toolchain +--------|---------------|---------- +``2.1.2`` | ``-R-4.3.2`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/s/scFEA.md b/docs/version-specific/supported-software/s/scFEA.md new file mode 100644 index 000000000..7f70ba0c2 --- /dev/null +++ b/docs/version-specific/supported-software/s/scFEA.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# scFEA + +scFEA: A graph neural network model to estimate cell-wise metabolic using single cell RNA-seq data + +*homepage*: + +version | toolchain +--------|---------- +``1.1-20221109`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/s/scib-metrics.md b/docs/version-specific/supported-software/s/scib-metrics.md index 47578a066..6c9331a43 100644 --- a/docs/version-specific/supported-software/s/scib-metrics.md +++ b/docs/version-specific/supported-software/s/scib-metrics.md @@ -11,6 +11,7 @@ Accelerated and Python-only metrics for benchmarking single-cell integration out version | toolchain --------|---------- ``0.3.3`` | ``foss/2021a`` +``0.5.1`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/scikit-build.md b/docs/version-specific/supported-software/s/scikit-build.md index 02036a816..78b3f432c 100644 --- a/docs/version-specific/supported-software/s/scikit-build.md +++ b/docs/version-specific/supported-software/s/scikit-build.md @@ -27,6 +27,7 @@ version | versionsuffix | toolchain ``0.17.2`` | | ``GCCcore/12.2.0`` ``0.17.6`` | | ``GCCcore/12.3.0`` ``0.17.6`` | | ``GCCcore/13.2.0`` +``0.17.6`` | | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/scrublet.md b/docs/version-specific/supported-software/s/scrublet.md index 91529dec5..8f69e1c88 100644 --- a/docs/version-specific/supported-software/s/scrublet.md +++ b/docs/version-specific/supported-software/s/scrublet.md @@ -11,6 +11,7 @@ Single-Cell Remover of Doublets - Python code for identifying doublets in single version | toolchain --------|---------- ``0.2.3`` | ``foss/2022a`` +``0.2.3`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/scvi-tools.md b/docs/version-specific/supported-software/s/scvi-tools.md index c5ea454c9..43d509bd1 100644 --- a/docs/version-specific/supported-software/s/scvi-tools.md +++ b/docs/version-specific/supported-software/s/scvi-tools.md @@ -12,6 +12,8 @@ version | versionsuffix | toolchain --------|---------------|---------- ``0.16.4`` | ``-CUDA-11.3.1`` | ``foss/2021a`` ``0.16.4`` | | ``foss/2021a`` +``1.1.2`` | ``-CUDA-12.1.1`` | ``foss/2023a`` +``1.1.2`` | | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/sdsl-lite.md b/docs/version-specific/supported-software/s/sdsl-lite.md new file mode 100644 index 000000000..0cd4c347e --- /dev/null +++ b/docs/version-specific/supported-software/s/sdsl-lite.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# sdsl-lite + +The Succinct Data Structure Library (SDSL) is a powerful and flexible C++11 library implementing succinct data structures. In total, the library contains the highlights of 40 research publications. Succinct data structures can represent an object (such as a bitvector or a tree) in space close to the information-theoretic lower bound of the object while supporting operations of the original object efficiently. The theoretical time complexity of an operation performed on the classical data structure and the equivalent succinct data structure are (most of the time) identical. + +*homepage*: + +version | toolchain +--------|---------- +``2.0.3`` | ``GCCcore/12.2.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/s/segment-anything.md b/docs/version-specific/supported-software/s/segment-anything.md index c539e5311..1e52a86dc 100644 --- a/docs/version-specific/supported-software/s/segment-anything.md +++ b/docs/version-specific/supported-software/s/segment-anything.md @@ -11,6 +11,7 @@ The Segment Anything Model (SAM) produces high quality object masks from input p version | toolchain --------|---------- ``1.0`` | ``foss/2022a`` +``1.0`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/setuptools-rust.md b/docs/version-specific/supported-software/s/setuptools-rust.md index 77bfe51c4..16a8957b7 100644 --- a/docs/version-specific/supported-software/s/setuptools-rust.md +++ b/docs/version-specific/supported-software/s/setuptools-rust.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``1.6.0`` | ``GCCcore/12.3.0`` ``1.8.0`` | ``GCCcore/13.2.0`` +``1.9.0`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/sirocco.md b/docs/version-specific/supported-software/s/sirocco.md new file mode 100644 index 000000000..7941cd3db --- /dev/null +++ b/docs/version-specific/supported-software/s/sirocco.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# sirocco + +C++ library that allows to compute piecewise linear approximations of the path followed by the root of a complex polynomial + +*homepage*: + +version | toolchain +--------|---------- +``2.1.0`` | ``GCC/13.2.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/s/slepc4py.md b/docs/version-specific/supported-software/s/slepc4py.md index 204554d7e..59d7aac70 100644 --- a/docs/version-specific/supported-software/s/slepc4py.md +++ b/docs/version-specific/supported-software/s/slepc4py.md @@ -12,6 +12,7 @@ version | versionsuffix | toolchain --------|---------------|---------- ``3.12.0`` | ``-Python-3.7.4`` | ``foss/2019b`` ``3.15.1`` | | ``foss/2021a`` +``3.20.2`` | | ``foss/2023a`` ``3.9.0`` | ``-Python-3.6.4`` | ``foss/2018a`` diff --git a/docs/version-specific/supported-software/s/smafa.md b/docs/version-specific/supported-software/s/smafa.md index 267c77b77..e977f3a57 100644 --- a/docs/version-specific/supported-software/s/smafa.md +++ b/docs/version-specific/supported-software/s/smafa.md @@ -11,6 +11,7 @@ Smafa attempts to align or cluster pre-aligned biological sequences, handling se version | toolchain --------|---------- ``0.4.0`` | ``GCCcore/8.2.0`` +``0.8.0`` | ``GCC/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/smithwaterman.md b/docs/version-specific/supported-software/s/smithwaterman.md index 697f80ee9..7e29d4aba 100644 --- a/docs/version-specific/supported-software/s/smithwaterman.md +++ b/docs/version-specific/supported-software/s/smithwaterman.md @@ -14,6 +14,7 @@ version | toolchain ``20160702`` | ``GCCcore/10.3.0`` ``20160702`` | ``GCCcore/11.2.0`` ``20160702`` | ``GCCcore/11.3.0`` +``20160702`` | ``GCCcore/12.2.0`` ``20160702`` | ``GCCcore/12.3.0`` ``20160702`` | ``GCCcore/9.3.0`` diff --git a/docs/version-specific/supported-software/s/snpEff.md b/docs/version-specific/supported-software/s/snpEff.md index b0bc3dac1..2ad4ca1ca 100644 --- a/docs/version-specific/supported-software/s/snpEff.md +++ b/docs/version-specific/supported-software/s/snpEff.md @@ -17,6 +17,7 @@ version | versionsuffix | toolchain ``5.0`` | ``-Java-13`` | ``system`` ``5.0e`` | ``-Java-13`` | ``GCCcore/10.2.0`` ``5.0e`` | ``-Java-11`` | ``GCCcore/11.2.0`` +``5.2c`` | ``-Java-11`` | ``GCCcore/12.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/spaCy.md b/docs/version-specific/supported-software/s/spaCy.md index 381e84c5f..352fdc400 100644 --- a/docs/version-specific/supported-software/s/spaCy.md +++ b/docs/version-specific/supported-software/s/spaCy.md @@ -11,6 +11,7 @@ Industrial-strength Natural Language Processing (NLP) in Python. version | toolchain --------|---------- ``3.4.4`` | ``foss/2022a`` +``3.7.4`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/spektral.md b/docs/version-specific/supported-software/s/spektral.md index d17c5dceb..8eb906c2a 100644 --- a/docs/version-specific/supported-software/s/spektral.md +++ b/docs/version-specific/supported-software/s/spektral.md @@ -11,6 +11,7 @@ Spektral is a Python library for graph deep learning. The main goal of this pro version | versionsuffix | toolchain --------|---------------|---------- ``1.1.0`` | ``-CUDA-11.4.1`` | ``foss/2021b`` +``1.2.0`` | ``-TensorFlow-2.5.0`` | ``fosscuda/2020b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/spglib-python.md b/docs/version-specific/supported-software/s/spglib-python.md index 9f6b555fb..747a45f57 100644 --- a/docs/version-specific/supported-software/s/spglib-python.md +++ b/docs/version-specific/supported-software/s/spglib-python.md @@ -34,6 +34,7 @@ version | versionsuffix | toolchain ``2.0.2`` | | ``gfbf/2022b`` ``2.1.0`` | | ``gfbf/2023a`` ``2.1.0`` | | ``iimkl/2023a`` +``2.5.0`` | | ``gfbf/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/spglib.md b/docs/version-specific/supported-software/s/spglib.md index aa0b2310e..1a94f571c 100644 --- a/docs/version-specific/supported-software/s/spglib.md +++ b/docs/version-specific/supported-software/s/spglib.md @@ -16,6 +16,7 @@ version | toolchain ``1.9.9`` | ``intel/2017b`` ``2.0.2`` | ``GCCcore/11.3.0`` ``2.0.2`` | ``GCCcore/12.2.0`` +``2.5.0`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/spla.md b/docs/version-specific/supported-software/s/spla.md new file mode 100644 index 000000000..fa1b73172 --- /dev/null +++ b/docs/version-specific/supported-software/s/spla.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# spla + +SPLA provides specialized functions for linear algebra computations with a C++ and C interface, which are inspired by requirements in computational material science codes. + +*homepage*: + +version | toolchain +--------|---------- +``1.6.1`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/s/spoa.md b/docs/version-specific/supported-software/s/spoa.md index 18aa7c615..3fb02eccd 100644 --- a/docs/version-specific/supported-software/s/spoa.md +++ b/docs/version-specific/supported-software/s/spoa.md @@ -19,6 +19,7 @@ version | toolchain ``4.0.7`` | ``GCC/11.3.0`` ``4.0.7`` | ``GCC/12.2.0`` ``4.1.0`` | ``GCC/12.3.0`` +``4.1.0`` | ``GCC/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/submitit.md b/docs/version-specific/supported-software/s/submitit.md new file mode 100644 index 000000000..15433a588 --- /dev/null +++ b/docs/version-specific/supported-software/s/submitit.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# submitit + +Submitit is a lightweight tool for submitting Python functions for computation within a Slurm cluster. + +*homepage*: + +version | toolchain +--------|---------- +``1.2.0`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/s/svist4get.md b/docs/version-specific/supported-software/s/svist4get.md index 62dfc724b..d80f225d8 100644 --- a/docs/version-specific/supported-software/s/svist4get.md +++ b/docs/version-specific/supported-software/s/svist4get.md @@ -11,6 +11,7 @@ Svist4get is a simple bioinformatics tool for visualization of genomic signal t version | toolchain --------|---------- ``1.3.1`` | ``foss/2020b`` +``1.3.1`` | ``foss/2022b`` ``1.3.1`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/t/TAMkin.md b/docs/version-specific/supported-software/t/TAMkin.md index 0feefea11..8f0175ef8 100644 --- a/docs/version-specific/supported-software/t/TAMkin.md +++ b/docs/version-specific/supported-software/t/TAMkin.md @@ -16,6 +16,8 @@ version | versionsuffix | toolchain ``1.2.6`` | | ``foss/2020b`` ``1.2.6`` | | ``foss/2021a`` ``1.2.6`` | | ``foss/2021b`` +``1.2.6`` | | ``foss/2022a`` +``1.2.6`` | | ``foss/2022b`` ``1.2.6`` | | ``foss/2023a`` ``1.2.6`` | ``-Python-3.7.2`` | ``intel/2019a`` ``1.2.6`` | ``-Python-3.8.2`` | ``intel/2020a`` diff --git a/docs/version-specific/supported-software/t/TELEMAC-MASCARET.md b/docs/version-specific/supported-software/t/TELEMAC-MASCARET.md index 4f222d51c..80d0d506d 100644 --- a/docs/version-specific/supported-software/t/TELEMAC-MASCARET.md +++ b/docs/version-specific/supported-software/t/TELEMAC-MASCARET.md @@ -11,6 +11,7 @@ TELEMAC-MASCARET is an integrated suite of solvers for use in the field of free- version | toolchain --------|---------- ``8p3r1`` | ``foss/2021b`` +``8p5r0`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/t/TF-COMB.md b/docs/version-specific/supported-software/t/TF-COMB.md index 119edb4bb..e2e601cb6 100644 --- a/docs/version-specific/supported-software/t/TF-COMB.md +++ b/docs/version-specific/supported-software/t/TF-COMB.md @@ -10,6 +10,7 @@ Transcription Factor Co-Occurrence using Market Basket analysis. version | toolchain --------|---------- +``1.1`` | ``foss/2022b`` ``1.1`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/t/TOBIAS.md b/docs/version-specific/supported-software/t/TOBIAS.md index c86821443..7e689c2cb 100644 --- a/docs/version-specific/supported-software/t/TOBIAS.md +++ b/docs/version-specific/supported-software/t/TOBIAS.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``0.12.12`` | ``foss/2021b`` ``0.14.0`` | ``foss/2020b`` +``0.16.1`` | ``foss/2022b`` ``0.16.1`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/t/TensorFlow.md b/docs/version-specific/supported-software/t/TensorFlow.md index b72adcb99..8d1abb63c 100644 --- a/docs/version-specific/supported-software/t/TensorFlow.md +++ b/docs/version-specific/supported-software/t/TensorFlow.md @@ -69,6 +69,7 @@ version | versionsuffix | toolchain ``2.11.0`` | | ``foss/2022a`` ``2.13.0`` | | ``foss/2022b`` ``2.13.0`` | | ``foss/2023a`` +``2.15.1`` | ``-CUDA-12.1.1`` | ``foss/2023a`` ``2.15.1`` | | ``foss/2023a`` ``2.2.0`` | ``-Python-3.7.4`` | ``foss/2019b`` ``2.2.0`` | ``-Python-3.7.4`` | ``fosscuda/2019b`` diff --git a/docs/version-specific/supported-software/t/Tk.md b/docs/version-specific/supported-software/t/Tk.md index a3645ac50..4f76c0cc4 100644 --- a/docs/version-specific/supported-software/t/Tk.md +++ b/docs/version-specific/supported-software/t/Tk.md @@ -18,6 +18,7 @@ version | versionsuffix | toolchain ``8.6.12`` | | ``GCCcore/12.2.0`` ``8.6.13`` | | ``GCCcore/12.3.0`` ``8.6.13`` | | ``GCCcore/13.2.0`` +``8.6.14`` | | ``GCCcore/13.3.0`` ``8.6.3`` | ``-no-X11`` | ``GCC/4.8.4`` ``8.6.3`` | ``-no-X11`` | ``GCC/4.9.2`` ``8.6.4`` | ``-no-X11`` | ``GCC/4.9.3-2.25`` diff --git a/docs/version-specific/supported-software/t/Tkinter.md b/docs/version-specific/supported-software/t/Tkinter.md index 3d5c2384a..62c46c012 100644 --- a/docs/version-specific/supported-software/t/Tkinter.md +++ b/docs/version-specific/supported-software/t/Tkinter.md @@ -30,6 +30,7 @@ version | versionsuffix | toolchain ``3.10.8`` | | ``GCCcore/12.2.0`` ``3.11.3`` | | ``GCCcore/12.3.0`` ``3.11.5`` | | ``GCCcore/13.2.0`` +``3.12.3`` | | ``GCCcore/13.3.0`` ``3.6.1`` | ``-Python-3.6.1`` | ``foss/2017a`` ``3.6.1`` | ``-Python-3.6.1`` | ``intel/2017a`` ``3.6.2`` | ``-Python-3.6.2`` | ``foss/2017b`` diff --git a/docs/version-specific/supported-software/t/Transrate.md b/docs/version-specific/supported-software/t/Transrate.md index 3fe8915c2..d9b496b42 100644 --- a/docs/version-specific/supported-software/t/Transrate.md +++ b/docs/version-specific/supported-software/t/Transrate.md @@ -4,12 +4,13 @@ search: --- # Transrate -Transrate is software for de-novo transcriptome assembly quality analysis. It examines your assembly in detail and compares it to experimental evidence such as the sequencing reads, reporting quality scores for contigs and assemblies. This allows you to choose between assemblers and parameters, filter out the bad contigs from an assembly, and help decide when to stop trying to improve the assembly. +Transrate is software for de-novo transcriptome assembly quality analysis. It examines your assembly in detail and compares it to experimental evidence such as the sequencing reads, reporting quality scores for contigs and assemblies. This allows you to choose between assemblers and parameters, filter out the bad contigs from an assembly, and help decide when to stop trying to improve the assembly. -*homepage*: +*homepage*: version | toolchain --------|---------- +``1.0.3`` | ``GCC/12.3.0`` ``1.0.3`` | ``system`` diff --git a/docs/version-specific/supported-software/t/Triangle.md b/docs/version-specific/supported-software/t/Triangle.md index 347f484f8..3f3e6c515 100644 --- a/docs/version-specific/supported-software/t/Triangle.md +++ b/docs/version-specific/supported-software/t/Triangle.md @@ -6,10 +6,11 @@ search: Triangle generates exact Delaunay triangulations, constrained Delaunay triangulations, conforming Delaunay triangulations, Voronoi diagrams, and high-quality triangular meshes. The latter can be generated with no small or large angles, and are thus suitable for finite element analysis. -*homepage*: +*homepage*: version | toolchain --------|---------- +``1.6`` | ``GCCcore/13.2.0`` ``1.6`` | ``GCCcore/6.4.0`` ``1.6`` | ``GCCcore/9.3.0`` ``1.6`` | ``foss/2016a`` diff --git a/docs/version-specific/supported-software/t/Trycycler.md b/docs/version-specific/supported-software/t/Trycycler.md index c772c5aa8..9abcc9d72 100644 --- a/docs/version-specific/supported-software/t/Trycycler.md +++ b/docs/version-specific/supported-software/t/Trycycler.md @@ -13,6 +13,7 @@ version | versionsuffix | toolchain ``0.3.3`` | ``-Python-3.8.2`` | ``foss/2020a`` ``0.5.2`` | | ``foss/2021a`` ``0.5.3`` | | ``foss/2021b`` +``0.5.5`` | ``-R-4.3.2`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/t/index.md b/docs/version-specific/supported-software/t/index.md index df8305a95..fc8722ff5 100644 --- a/docs/version-specific/supported-software/t/index.md +++ b/docs/version-specific/supported-software/t/index.md @@ -30,6 +30,7 @@ search: * [Tcl](Tcl.md) * [TCLAP](TCLAP.md) * [tcsh](tcsh.md) + * [tdlib](tdlib.md) * [tecplot360ex](tecplot360ex.md) * [TELEMAC-MASCARET](TELEMAC-MASCARET.md) * [Telescope](Telescope.md) @@ -89,6 +90,7 @@ search: * [TOPAS](TOPAS.md) * [topaz](topaz.md) * [TopHat](TopHat.md) + * [torch-em](torch-em.md) * [torchaudio](torchaudio.md) * [torchdata](torchdata.md) * [torchinfo](torchinfo.md) diff --git a/docs/version-specific/supported-software/t/tabixpp.md b/docs/version-specific/supported-software/t/tabixpp.md index 1d296064b..375da903f 100644 --- a/docs/version-specific/supported-software/t/tabixpp.md +++ b/docs/version-specific/supported-software/t/tabixpp.md @@ -15,6 +15,7 @@ version | toolchain ``1.1.0`` | ``GCC/11.2.0`` ``1.1.0`` | ``GCC/9.3.0`` ``1.1.2`` | ``GCC/11.3.0`` +``1.1.2`` | ``GCC/12.2.0`` ``1.1.2`` | ``GCC/12.3.0`` diff --git a/docs/version-specific/supported-software/t/tbb.md b/docs/version-specific/supported-software/t/tbb.md index 30f23cbda..893745951 100644 --- a/docs/version-specific/supported-software/t/tbb.md +++ b/docs/version-specific/supported-software/t/tbb.md @@ -36,6 +36,7 @@ version | toolchain ``2021.11.0`` | ``GCCcore/12.3.0`` ``2021.4.0`` | ``GCCcore/11.2.0`` ``2021.5.0`` | ``GCCcore/11.3.0`` +``2021.9.0`` | ``GCCcore/12.2.0`` ``4.0.0.233`` | ``system`` ``4.0.5.339`` | ``system`` ``4.3.6.211`` | ``system`` diff --git a/docs/version-specific/supported-software/f/Fujitsu.md b/docs/version-specific/supported-software/t/tdlib.md similarity index 83% rename from docs/version-specific/supported-software/f/Fujitsu.md rename to docs/version-specific/supported-software/t/tdlib.md index c116b5bf0..34d0bb671 100644 --- a/docs/version-specific/supported-software/f/Fujitsu.md +++ b/docs/version-specific/supported-software/t/tdlib.md @@ -2,15 +2,15 @@ search: boost: 0.5 --- -# Fujitsu +# tdlib -Toolchain using Fujitsu compilers and libraries. +treedec provides tree decomposition algorithms. -*homepage*: <(none)> +*homepage*: version | toolchain --------|---------- -``21.05`` | ``system`` +``0.9.3`` | ``GCC/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/t/tensorboard.md b/docs/version-specific/supported-software/t/tensorboard.md index d8da38816..4ff555d72 100644 --- a/docs/version-specific/supported-software/t/tensorboard.md +++ b/docs/version-specific/supported-software/t/tensorboard.md @@ -11,6 +11,7 @@ TensorBoard is a suite of web applications for inspecting and understanding your version | toolchain --------|---------- ``2.10.0`` | ``foss/2022a`` +``2.15.1`` | ``gfbf/2022b`` ``2.15.1`` | ``gfbf/2023a`` ``2.8.0`` | ``foss/2021a`` diff --git a/docs/version-specific/supported-software/t/tiktoken.md b/docs/version-specific/supported-software/t/tiktoken.md index 491fb006f..c409e3582 100644 --- a/docs/version-specific/supported-software/t/tiktoken.md +++ b/docs/version-specific/supported-software/t/tiktoken.md @@ -11,6 +11,7 @@ tiktoken is a fast BPE tokeniser for use with OpenAI's models version | toolchain --------|---------- ``0.6.0`` | ``GCCcore/12.3.0`` +``0.7.0`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/t/timm.md b/docs/version-specific/supported-software/t/timm.md index 8b99f86d6..47f3e68d9 100644 --- a/docs/version-specific/supported-software/t/timm.md +++ b/docs/version-specific/supported-software/t/timm.md @@ -12,6 +12,7 @@ version | versionsuffix | toolchain --------|---------------|---------- ``0.6.13`` | ``-CUDA-11.7.0`` | ``foss/2022a`` ``0.9.7`` | ``-CUDA-11.7.0`` | ``foss/2022a`` +``1.0.8`` | ``-CUDA-12.1.1`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/t/torch-em.md b/docs/version-specific/supported-software/t/torch-em.md new file mode 100644 index 000000000..05d0bc233 --- /dev/null +++ b/docs/version-specific/supported-software/t/torch-em.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# torch-em + +Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch. + +*homepage*: + +version | toolchain +--------|---------- +``0.7.1`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/u/UCX-CUDA.md b/docs/version-specific/supported-software/u/UCX-CUDA.md index 106340236..9b4a8932e 100644 --- a/docs/version-specific/supported-software/u/UCX-CUDA.md +++ b/docs/version-specific/supported-software/u/UCX-CUDA.md @@ -19,6 +19,8 @@ version | versionsuffix | toolchain ``1.13.1`` | ``-CUDA-12.0.0`` | ``GCCcore/12.2.0`` ``1.14.1`` | ``-CUDA-12.1.1`` | ``GCCcore/12.3.0`` ``1.15.0`` | ``-CUDA-12.4.0`` | ``GCCcore/13.2.0`` +``1.15.0`` | ``-CUDA-12.5.0`` | ``GCCcore/13.2.0`` +``1.16.0`` | ``-CUDA-12.6.0`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/u/Umpire.md b/docs/version-specific/supported-software/u/Umpire.md new file mode 100644 index 000000000..f8e05c94e --- /dev/null +++ b/docs/version-specific/supported-software/u/Umpire.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# Umpire + +Umpire is a resource management library that allows the discovery, provision, and management of memory on machines with multiple memory devices like NUMA and GPUs. + +*homepage*: + +version | toolchain +--------|---------- +``2024.02.1`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/u/Uni-Core.md b/docs/version-specific/supported-software/u/Uni-Core.md new file mode 100644 index 000000000..8c85bd578 --- /dev/null +++ b/docs/version-specific/supported-software/u/Uni-Core.md @@ -0,0 +1,18 @@ +--- +search: + boost: 0.5 +--- +# Uni-Core + +An efficient distributed PyTorch framework + +*homepage*: + +version | versionsuffix | toolchain +--------|---------------|---------- +``0.0.3`` | ``-CUDA-11.7.0`` | ``foss/2022a`` +``0.0.3`` | | ``foss/2022a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/u/index.md b/docs/version-specific/supported-software/u/index.md index c21fcc0c2..9d911de5f 100644 --- a/docs/version-specific/supported-software/u/index.md +++ b/docs/version-specific/supported-software/u/index.md @@ -23,9 +23,11 @@ search: * [UMI-tools](UMI-tools.md) * [umi4cPackage](umi4cPackage.md) * [umis](umis.md) + * [Umpire](Umpire.md) * [UNAFold](UNAFold.md) * [uncertainties](uncertainties.md) * [uncertainty-calibration](uncertainty-calibration.md) + * [Uni-Core](Uni-Core.md) * [unicore-uftp](unicore-uftp.md) * [Unicycler](Unicycler.md) * [Unidecode](Unidecode.md) diff --git a/docs/version-specific/supported-software/u/unixODBC.md b/docs/version-specific/supported-software/u/unixODBC.md index 4b75d745a..09d5375e3 100644 --- a/docs/version-specific/supported-software/u/unixODBC.md +++ b/docs/version-specific/supported-software/u/unixODBC.md @@ -11,6 +11,7 @@ unixODBC provides a uniform interface between application and database driver version | toolchain --------|---------- ``2.3.11`` | ``foss/2022b`` +``2.3.12`` | ``GCCcore/12.3.0`` ``2.3.7`` | ``foss/2018b`` diff --git a/docs/version-specific/supported-software/u/utf8proc.md b/docs/version-specific/supported-software/u/utf8proc.md index 5154215cb..065675e7f 100644 --- a/docs/version-specific/supported-software/u/utf8proc.md +++ b/docs/version-specific/supported-software/u/utf8proc.md @@ -20,6 +20,7 @@ version | toolchain ``2.7.0`` | ``GCCcore/11.3.0`` ``2.8.0`` | ``GCCcore/12.2.0`` ``2.8.0`` | ``GCCcore/12.3.0`` +``2.9.0`` | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/v/VBZ-Compression.md b/docs/version-specific/supported-software/v/VBZ-Compression.md index 1bd53174a..b8222344b 100644 --- a/docs/version-specific/supported-software/v/VBZ-Compression.md +++ b/docs/version-specific/supported-software/v/VBZ-Compression.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``1.0.1`` | ``gompi/2020b`` ``1.0.3`` | ``gompi/2022a`` +``1.0.3`` | ``gompi/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/v/VSEARCH.md b/docs/version-specific/supported-software/v/VSEARCH.md index fea11e35b..cec911d16 100644 --- a/docs/version-specific/supported-software/v/VSEARCH.md +++ b/docs/version-specific/supported-software/v/VSEARCH.md @@ -16,6 +16,7 @@ version | toolchain ``2.21.1`` | ``GCC/10.3.0`` ``2.22.1`` | ``GCC/11.3.0`` ``2.25.0`` | ``GCC/12.3.0`` +``2.28.1`` | ``GCC/10.2.0`` ``2.9.1`` | ``foss/2018b`` diff --git a/docs/version-specific/supported-software/v/VTK.md b/docs/version-specific/supported-software/v/VTK.md index e5fe9805c..69b4953cc 100644 --- a/docs/version-specific/supported-software/v/VTK.md +++ b/docs/version-specific/supported-software/v/VTK.md @@ -43,6 +43,7 @@ version | versionsuffix | toolchain ``9.2.0.rc2`` | | ``foss/2022a`` ``9.2.2`` | | ``foss/2022a`` ``9.2.6`` | | ``foss/2022b`` +``9.2.6`` | | ``foss/2023a`` ``9.3.0`` | | ``foss/2023a`` ``9.3.0`` | | ``foss/2023b`` diff --git a/docs/version-specific/supported-software/v/Visit.md b/docs/version-specific/supported-software/v/Visit.md new file mode 100644 index 000000000..d6e639149 --- /dev/null +++ b/docs/version-specific/supported-software/v/Visit.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# Visit + +VisIt is an Open Source, interactive, scalable, visualization, animation and analysis tool. From Unix, Windows or Mac workstations, users can interactively visualize and analyze data ranging in scale from small (<101 core) desktop-sized projects to large (>105 core) leadership-class computing facility simulation campaigns. Users can quickly generate visualizations, animate them through time, manipulate them with a variety of operators and mathematical expressions, and save the resulting images and animations for presentations. VisIt contains a rich set of visualization features to enable users to view a wide variety of data including scalar and vector fields defined on two- and three-dimensional (2D and 3D) structured, adaptive and unstructured meshes. Owing to its customizeable plugin design, VisIt is capabable of visualizing data from over 120 different scientific data formats. + +*homepage*: + +version | toolchain +--------|---------- +``3.4.1`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/v/index.md b/docs/version-specific/supported-software/v/index.md index 5c84bf088..cf4d9a14e 100644 --- a/docs/version-specific/supported-software/v/index.md +++ b/docs/version-specific/supported-software/v/index.md @@ -38,6 +38,7 @@ search: * [VERSE](VERSE.md) * [VESTA](VESTA.md) * [ViennaRNA](ViennaRNA.md) + * [vigra](vigra.md) * [Vim](Vim.md) * [VirSorter](VirSorter.md) * [VirSorter2](VirSorter2.md) @@ -45,6 +46,7 @@ search: * [VirtualGL](VirtualGL.md) * [Virtuoso-opensource](Virtuoso-opensource.md) * [visdom](visdom.md) + * [Visit](Visit.md) * [vispr](vispr.md) * [VisPy](VisPy.md) * [vitessce-python](vitessce-python.md) diff --git a/docs/version-specific/supported-software/v/vcflib.md b/docs/version-specific/supported-software/v/vcflib.md index 4f1d90507..b565a2621 100644 --- a/docs/version-specific/supported-software/v/vcflib.md +++ b/docs/version-specific/supported-software/v/vcflib.md @@ -16,6 +16,7 @@ version | versionsuffix | toolchain ``1.0.3`` | ``-R-4.1.0`` | ``foss/2021a`` ``1.0.3`` | ``-R-4.1.2`` | ``foss/2021b`` ``1.0.9`` | ``-R-4.2.1`` | ``foss/2022a`` +``1.0.9`` | ``-R-4.2.2`` | ``foss/2022b`` ``1.0.9`` | ``-R-4.3.2`` | ``gfbf/2023a`` diff --git a/docs/version-specific/supported-software/v/velocyto.md b/docs/version-specific/supported-software/v/velocyto.md index f331f90b3..1ecd18e19 100644 --- a/docs/version-specific/supported-software/v/velocyto.md +++ b/docs/version-specific/supported-software/v/velocyto.md @@ -12,6 +12,7 @@ version | versionsuffix | toolchain --------|---------------|---------- ``0.17.17`` | | ``foss/2021a`` ``0.17.17`` | | ``foss/2022a`` +``0.17.17`` | | ``foss/2023a`` ``0.17.17`` | ``-Python-3.8.2`` | ``intel/2020a`` diff --git a/docs/version-specific/supported-software/v/vigra.md b/docs/version-specific/supported-software/v/vigra.md new file mode 100644 index 000000000..ab5d4ef6f --- /dev/null +++ b/docs/version-specific/supported-software/v/vigra.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# vigra + +Vision with Generic Algorithms is an image processing and analysis library that puts its main emphasis on customizable algorithms and data structures. + +*homepage*: + +version | toolchain +--------|---------- +``1.11.2`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/v/virtualenv.md b/docs/version-specific/supported-software/v/virtualenv.md index 0454a1a16..e3000c90f 100644 --- a/docs/version-specific/supported-software/v/virtualenv.md +++ b/docs/version-specific/supported-software/v/virtualenv.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``20.23.1`` | ``GCCcore/12.3.0`` ``20.24.6`` | ``GCCcore/13.2.0`` +``20.26.2`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/w/WFA2.md b/docs/version-specific/supported-software/w/WFA2.md index 79a3bbb31..d3a0fd11c 100644 --- a/docs/version-specific/supported-software/w/WFA2.md +++ b/docs/version-specific/supported-software/w/WFA2.md @@ -11,6 +11,7 @@ The wavefront alignment (WFA) algorithm is an exact gap-affine algorithm that t version | toolchain --------|---------- ``2.3.3`` | ``GCCcore/11.3.0`` +``2.3.4`` | ``GCCcore/12.2.0`` ``2.3.4`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/w/WRF.md b/docs/version-specific/supported-software/w/WRF.md index 74a70d93f..0b8aa8341 100644 --- a/docs/version-specific/supported-software/w/WRF.md +++ b/docs/version-specific/supported-software/w/WRF.md @@ -26,6 +26,7 @@ version | versionsuffix | toolchain ``4.3`` | ``-dmpar`` | ``foss/2021a`` ``4.4`` | ``-dmpar`` | ``foss/2022a`` ``4.4.1`` | ``-dmpar`` | ``foss/2022b`` +``4.5.1`` | ``-dmpar`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/w/Wayland.md b/docs/version-specific/supported-software/w/Wayland.md index 96a3e699c..11ab4f132 100644 --- a/docs/version-specific/supported-software/w/Wayland.md +++ b/docs/version-specific/supported-software/w/Wayland.md @@ -16,6 +16,7 @@ version | toolchain ``1.22.0`` | ``GCCcore/12.2.0`` ``1.22.0`` | ``GCCcore/12.3.0`` ``1.22.0`` | ``GCCcore/13.2.0`` +``1.23.0`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/w/index.md b/docs/version-specific/supported-software/w/index.md index 663c633e7..d905693b4 100644 --- a/docs/version-specific/supported-software/w/index.md +++ b/docs/version-specific/supported-software/w/index.md @@ -19,6 +19,7 @@ search: * [wcwidth](wcwidth.md) * [webin-cli](webin-cli.md) * [WebKitGTK+](WebKitGTK+.md) + * [weblogo](weblogo.md) * [WebSocket++](WebSocket++.md) * [WEKA](WEKA.md) * [WFA2](WFA2.md) @@ -38,6 +39,7 @@ search: * [worker](worker.md) * [wpebackend-fdo](wpebackend-fdo.md) * [WPS](WPS.md) + * [wradlib](wradlib.md) * [wrapt](wrapt.md) * [WRF](WRF.md) * [WRF-Fire](WRF-Fire.md) diff --git a/docs/version-specific/supported-software/w/weblogo.md b/docs/version-specific/supported-software/w/weblogo.md new file mode 100644 index 000000000..5a9e1a4fd --- /dev/null +++ b/docs/version-specific/supported-software/w/weblogo.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# weblogo + +WebLogo is a web based application designed to make the generation of sequence logos as easy and painless as possible. + +*homepage*: + +version | toolchain +--------|---------- +``2.8.2`` | ``foss/2022b`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/w/wget.md b/docs/version-specific/supported-software/w/wget.md index 968233f9c..90574b290 100644 --- a/docs/version-specific/supported-software/w/wget.md +++ b/docs/version-specific/supported-software/w/wget.md @@ -20,6 +20,7 @@ version | toolchain ``1.21.1`` | ``GCCcore/10.3.0`` ``1.21.2`` | ``GCCcore/11.2.0`` ``1.21.3`` | ``GCCcore/11.3.0`` +``1.21.4`` | ``GCCcore/12.2.0`` ``1.21.4`` | ``GCCcore/13.2.0`` ``1.24.5`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/w/wradlib.md b/docs/version-specific/supported-software/w/wradlib.md new file mode 100644 index 000000000..e0cf5dfe1 --- /dev/null +++ b/docs/version-specific/supported-software/w/wradlib.md @@ -0,0 +1,18 @@ +--- +search: + boost: 0.5 +--- +# wradlib + +The wradlib project has been initiated in order to facilitate the use of weather radar data as well as to provide a common platform for research on new algorithms. + +*homepage*: + +version | toolchain +--------|---------- +``2.0.3`` | ``foss/2022a`` +``2.0.3`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/x/X11.md b/docs/version-specific/supported-software/x/X11.md index 526607b3f..eab2caa32 100644 --- a/docs/version-specific/supported-software/x/X11.md +++ b/docs/version-specific/supported-software/x/X11.md @@ -29,6 +29,7 @@ version | toolchain ``20221110`` | ``GCCcore/12.2.0`` ``20230603`` | ``GCCcore/12.3.0`` ``20231019`` | ``GCCcore/13.2.0`` +``20240607`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/x/XGBoost.md b/docs/version-specific/supported-software/x/XGBoost.md index 240a4cfeb..f916bea7f 100644 --- a/docs/version-specific/supported-software/x/XGBoost.md +++ b/docs/version-specific/supported-software/x/XGBoost.md @@ -21,6 +21,7 @@ version | versionsuffix | toolchain ``1.7.2`` | ``-CUDA-11.7.0`` | ``foss/2022a`` ``1.7.2`` | | ``foss/2022a`` ``2.0.2`` | | ``gfbf/2023a`` +``2.1.1`` | | ``gfbf/2023b`` ``20171120`` | ``-Java-1.8.0_152`` | ``intel/2017b`` diff --git a/docs/version-specific/supported-software/x/XML-LibXML.md b/docs/version-specific/supported-software/x/XML-LibXML.md index 61ff4055a..be897a6aa 100644 --- a/docs/version-specific/supported-software/x/XML-LibXML.md +++ b/docs/version-specific/supported-software/x/XML-LibXML.md @@ -26,6 +26,7 @@ version | versionsuffix | toolchain ``2.0207`` | | ``GCCcore/11.3.0`` ``2.0208`` | | ``GCCcore/12.2.0`` ``2.0209`` | | ``GCCcore/12.3.0`` +``2.0210`` | | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/x/index.md b/docs/version-specific/supported-software/x/index.md index b81a7fccc..f930b974a 100644 --- a/docs/version-specific/supported-software/x/index.md +++ b/docs/version-specific/supported-software/x/index.md @@ -55,6 +55,7 @@ search: * [XSD](XSD.md) * [XTandem](XTandem.md) * [xtb](xtb.md) + * [xtb-IFF](xtb-IFF.md) * [xtensor](xtensor.md) * [xtrans](xtrans.md) * [Xvfb](Xvfb.md) diff --git a/docs/version-specific/supported-software/x/x264.md b/docs/version-specific/supported-software/x/x264.md index 89b75b4ab..0ffe3865f 100644 --- a/docs/version-specific/supported-software/x/x264.md +++ b/docs/version-specific/supported-software/x/x264.md @@ -34,6 +34,7 @@ version | toolchain ``20230226`` | ``GCCcore/12.2.0`` ``20230226`` | ``GCCcore/12.3.0`` ``20231019`` | ``GCCcore/13.2.0`` +``20240513`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/x/x265.md b/docs/version-specific/supported-software/x/x265.md index 0f3ea5b45..cc4ad5b90 100644 --- a/docs/version-specific/supported-software/x/x265.md +++ b/docs/version-specific/supported-software/x/x265.md @@ -26,6 +26,7 @@ version | toolchain ``3.5`` | ``GCCcore/12.2.0`` ``3.5`` | ``GCCcore/12.3.0`` ``3.5`` | ``GCCcore/13.2.0`` +``3.6`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/x/xarray.md b/docs/version-specific/supported-software/x/xarray.md index 70faf84ef..439ae6e6e 100644 --- a/docs/version-specific/supported-software/x/xarray.md +++ b/docs/version-specific/supported-software/x/xarray.md @@ -36,6 +36,7 @@ version | versionsuffix | toolchain ``2022.9.0`` | | ``foss/2022a`` ``2023.4.2`` | | ``gfbf/2022b`` ``2023.9.0`` | | ``gfbf/2023a`` +``2024.5.0`` | | ``gfbf/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/x/xtb-IFF.md b/docs/version-specific/supported-software/x/xtb-IFF.md new file mode 100644 index 000000000..75a199eff --- /dev/null +++ b/docs/version-specific/supported-software/x/xtb-IFF.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# xtb-IFF + +General Intermolecular Force Field based on Tight-Binding Quantum Chemical Calculations. + +*homepage*: + +version | toolchain +--------|---------- +``1.1`` | ``system`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/x/xtb.md b/docs/version-specific/supported-software/x/xtb.md index 6afe31bde..1a62d845e 100644 --- a/docs/version-specific/supported-software/x/xtb.md +++ b/docs/version-specific/supported-software/x/xtb.md @@ -21,6 +21,7 @@ version | versionsuffix | toolchain ``6.6.1`` | | ``gfbf/2022b`` ``6.6.1`` | | ``gfbf/2023a`` ``6.7.0`` | | ``gfbf/2023a`` +``6.7.1`` | | ``gfbf/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/x/xtensor.md b/docs/version-specific/supported-software/x/xtensor.md index 3f074bb7b..16ca42677 100644 --- a/docs/version-specific/supported-software/x/xtensor.md +++ b/docs/version-specific/supported-software/x/xtensor.md @@ -11,6 +11,7 @@ xtensor is a C++ library meant for numerical analysis with multi-dimensional arr version | toolchain --------|---------- ``0.24.0`` | ``foss/2021b`` +``0.24.7`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/y/YACS.md b/docs/version-specific/supported-software/y/YACS.md index 7dc7789bf..259e67917 100644 --- a/docs/version-specific/supported-software/y/YACS.md +++ b/docs/version-specific/supported-software/y/YACS.md @@ -15,6 +15,7 @@ version | toolchain ``0.1.8`` | ``GCCcore/11.2.0`` ``0.1.8`` | ``GCCcore/11.3.0`` ``0.1.8`` | ``GCCcore/12.3.0`` +``0.1.8`` | ``GCCcore/13.3.0`` ``0.1.8`` | ``GCCcore/8.3.0`` diff --git a/docs/version-specific/supported-software/y/Yasm.md b/docs/version-specific/supported-software/y/Yasm.md index 31229b535..48d853a4e 100644 --- a/docs/version-specific/supported-software/y/Yasm.md +++ b/docs/version-specific/supported-software/y/Yasm.md @@ -17,6 +17,7 @@ version | toolchain ``1.3.0`` | ``GCCcore/12.2.0`` ``1.3.0`` | ``GCCcore/12.3.0`` ``1.3.0`` | ``GCCcore/13.2.0`` +``1.3.0`` | ``GCCcore/13.3.0`` ``1.3.0`` | ``GCCcore/6.4.0`` ``1.3.0`` | ``GCCcore/7.3.0`` ``1.3.0`` | ``GCCcore/8.2.0`` diff --git a/docs/version-specific/supported-software/y/index.md b/docs/version-specific/supported-software/y/index.md index bd95c213f..acbb3c4c4 100644 --- a/docs/version-specific/supported-software/y/index.md +++ b/docs/version-specific/supported-software/y/index.md @@ -17,6 +17,9 @@ search: * [YAPS](YAPS.md) * [Yasm](Yasm.md) * [YAXT](YAXT.md) + * [yell](yell.md) + * [yelp-tools](yelp-tools.md) + * [yelp-xsl](yelp-xsl.md) * [Yices](Yices.md) * [YODA](YODA.md) * [yt](yt.md) diff --git a/docs/version-specific/supported-software/y/yell.md b/docs/version-specific/supported-software/y/yell.md new file mode 100644 index 000000000..4f6fd4e67 --- /dev/null +++ b/docs/version-specific/supported-software/y/yell.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# yell + +Yell - Your Extensible Logging Library is a comprehensive logging replacement for Ruby. + +*homepage*: + +version | toolchain +--------|---------- +``2.2.2`` | ``GCC/12.3.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/y/yelp-tools.md b/docs/version-specific/supported-software/y/yelp-tools.md new file mode 100644 index 000000000..72aa7d579 --- /dev/null +++ b/docs/version-specific/supported-software/y/yelp-tools.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# yelp-tools + +yelp-tools is a collection of scripts and build utilities to help create, manage, and publish documentation for Yelp and the web. Most of the heavy lifting is done by packages like yelp-xsl and itstool. This package just wraps things up in a developer-friendly way. + +*homepage*: + +version | toolchain +--------|---------- +``42.1`` | ``GCCcore/12.3.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/y/yelp-xsl.md b/docs/version-specific/supported-software/y/yelp-xsl.md new file mode 100644 index 000000000..019475313 --- /dev/null +++ b/docs/version-specific/supported-software/y/yelp-xsl.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# yelp-xsl + +yelp-xsl is a collection of programs and data files to help you build, maintain, and distribute documentation. It provides XSLT stylesheets that can be built upon for help viewers and publishing systems. These stylesheets output JavaScript and CSS content, and reference images provided by yelp-xsl. This package also redistributes copies of the jQuery and jQuery.Syntax JavaScript libraries. + +*homepage*: + +version | toolchain +--------|---------- +``42.1`` | ``GCCcore/12.3.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/z/Z3.md b/docs/version-specific/supported-software/z/Z3.md index e85e08ab3..83e06d998 100644 --- a/docs/version-specific/supported-software/z/Z3.md +++ b/docs/version-specific/supported-software/z/Z3.md @@ -16,6 +16,7 @@ version | versionsuffix | toolchain ``4.12.2`` | | ``GCCcore/12.2.0`` ``4.12.2`` | | ``GCCcore/12.3.0`` ``4.13.0`` | | ``GCCcore/13.2.0`` +``4.13.0`` | | ``GCCcore/13.3.0`` ``4.8.10`` | ``-Python-3.8.6`` | ``GCCcore/10.2.0`` ``4.8.10`` | | ``GCCcore/10.2.0`` ``4.8.11`` | ``-Python-3.9.5`` | ``GCCcore/10.3.0`` diff --git a/docs/version-specific/supported-software/z/ZeroMQ.md b/docs/version-specific/supported-software/z/ZeroMQ.md index 519bd47da..d6ae794b3 100644 --- a/docs/version-specific/supported-software/z/ZeroMQ.md +++ b/docs/version-specific/supported-software/z/ZeroMQ.md @@ -36,6 +36,7 @@ version | toolchain ``4.3.4`` | ``GCCcore/12.2.0`` ``4.3.4`` | ``GCCcore/12.3.0`` ``4.3.5`` | ``GCCcore/13.2.0`` +``4.3.5`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/z/Zoltan.md b/docs/version-specific/supported-software/z/Zoltan.md new file mode 100644 index 000000000..24eb0ad28 --- /dev/null +++ b/docs/version-specific/supported-software/z/Zoltan.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# Zoltan + +Zoltan Dynamic Load Balancing and Graph Algorithm Toolkit + +*homepage*: + +version | toolchain +--------|---------- +``3.901`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/z/index.md b/docs/version-specific/supported-software/z/index.md index 96f11fc5c..ef40f14a9 100644 --- a/docs/version-specific/supported-software/z/index.md +++ b/docs/version-specific/supported-software/z/index.md @@ -9,6 +9,7 @@ search: * [Z3](Z3.md) + * [z5py](z5py.md) * [zarr](zarr.md) * [Zeo++](Zeo++.md) * [ZeroMQ](ZeroMQ.md) @@ -21,6 +22,7 @@ search: * [zlib](zlib.md) * [zlib-ng](zlib-ng.md) * [zlibbioc](zlibbioc.md) + * [Zoltan](Zoltan.md) * [Zopfli](Zopfli.md) * [ZPAQ](ZPAQ.md) * [zsh](zsh.md) diff --git a/docs/version-specific/supported-software/z/z5py.md b/docs/version-specific/supported-software/z/z5py.md new file mode 100644 index 000000000..a766236fb --- /dev/null +++ b/docs/version-specific/supported-software/z/z5py.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# z5py + +Lightweight C++ and Python interface for datasets in zarr and N5 format. + +*homepage*: + +version | toolchain +--------|---------- +``2.0.17`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/z/zlib.md b/docs/version-specific/supported-software/z/zlib.md index 34ddaf601..f7e6dea6a 100644 --- a/docs/version-specific/supported-software/z/zlib.md +++ b/docs/version-specific/supported-software/z/zlib.md @@ -11,7 +11,6 @@ zlib is designed to be a free, general-purpose, legally unencumbered -- that is, version | toolchain --------|---------- ``1.2.10`` | ``system`` -``1.2.11`` | ``FCC/4.5.0`` ``1.2.11`` | ``GCCcore/10.1.0`` ``1.2.11`` | ``GCCcore/10.2.0`` ``1.2.11`` | ``GCCcore/10.3.0`` @@ -78,6 +77,7 @@ version | toolchain ``1.2.8`` | ``system`` ``1.3.1`` | ``GCCcore/13.3.0`` ``1.3.1`` | ``GCCcore/14.1.0`` +``1.3.1`` | ``GCCcore/14.2.0`` ``1.3.1`` | ``system`` diff --git a/docs/version-specific/toolchain-opts.md b/docs/version-specific/toolchain-opts.md index fd24b93d3..12137b073 100644 --- a/docs/version-specific/toolchain-opts.md +++ b/docs/version-specific/toolchain-opts.md @@ -2,7 +2,7 @@ *(see also* ``eb --avail-toolchain-opts `` *)* -[cgmpich](#cgmpich) - [cgmpolf](#cgmpolf) - [cgmvapich2](#cgmvapich2) - [cgmvolf](#cgmvolf) - [cgompi](#cgompi) - [cgoolf](#cgoolf) - [ClangGCC](#clanggcc) - [CrayCCE](#craycce) - [CrayGNU](#craygnu) - [CrayIntel](#crayintel) - [CrayPGI](#craypgi) - [FCC](#fcc) - [ffmpi](#ffmpi) - [foss](#foss) - [fosscuda](#fosscuda) - [Fujitsu](#fujitsu) - [GCC](#gcc) - [GCCcore](#gcccore) - [gcccuda](#gcccuda) - [gfbf](#gfbf) - [gimkl](#gimkl) - [gimpi](#gimpi) - [gimpic](#gimpic) - [giolf](#giolf) - [giolfc](#giolfc) - [gmacml](#gmacml) - [gmkl](#gmkl) - [gmklc](#gmklc) - [gmpich2](#gmpich2) - [gmpich](#gmpich) - [gmpit](#gmpit) - [gmpolf](#gmpolf) - [gmvapich2](#gmvapich2) - [gmvolf](#gmvolf) - [GNU](#gnu) - [goalf](#goalf) - [gobff](#gobff) - [goblf](#goblf) - [gofbf](#gofbf) - [golf](#golf) - [golfc](#golfc) - [gomkl](#gomkl) - [gomklc](#gomklc) - [gompi](#gompi) - [gompic](#gompic) - [goolf](#goolf) - [goolfc](#goolfc) - [gpsmpi](#gpsmpi) - [gpsolf](#gpsolf) - [gqacml](#gqacml) - [gsmpi](#gsmpi) - [gsolf](#gsolf) - [iccifort](#iccifort) - [iccifortcuda](#iccifortcuda) - [ictce](#ictce) - [ifbf](#ifbf) - [iibff](#iibff) - [iimkl](#iimkl) - [iimklc](#iimklc) - [iimpi](#iimpi) - [iimpic](#iimpic) - [iiqmpi](#iiqmpi) - [impich](#impich) - [impmkl](#impmkl) - [intel-compilers](#intel-compilers) - [intel-para](#intel-para) - [intel](#intel) - [intelcuda](#intelcuda) - [iofbf](#iofbf) - [iomkl](#iomkl) - [iomklc](#iomklc) - [iompi](#iompi) - [iompic](#iompic) - [ipsmpi](#ipsmpi) - [iqacml](#iqacml) - [ismkl](#ismkl) - [NVHPC](#nvhpc) - [nvofbf](#nvofbf) - [nvompi](#nvompi) - [nvompic](#nvompic) - [nvpsmpi](#nvpsmpi) - [nvpsmpic](#nvpsmpic) - [PGI](#pgi) - [pmkl](#pmkl) - [pomkl](#pomkl) - [pompi](#pompi) - [system](#system) - [xlcxlf](#xlcxlf) - [xlmpich2](#xlmpich2) - [xlmpich](#xlmpich) - [xlmvapich2](#xlmvapich2) - [xlompi](#xlompi) +[cgmpich](#cgmpich) - [cgmpolf](#cgmpolf) - [cgmvapich2](#cgmvapich2) - [cgmvolf](#cgmvolf) - [cgompi](#cgompi) - [cgoolf](#cgoolf) - [ClangGCC](#clanggcc) - [CrayCCE](#craycce) - [CrayGNU](#craygnu) - [CrayIntel](#crayintel) - [CrayPGI](#craypgi) - [FCC](#fcc) - [ffmpi](#ffmpi) - [foss](#foss) - [fosscuda](#fosscuda) - [Fujitsu](#fujitsu) - [GCC](#gcc) - [GCCcore](#gcccore) - [gcccuda](#gcccuda) - [gfbf](#gfbf) - [gimkl](#gimkl) - [gimpi](#gimpi) - [gimpic](#gimpic) - [giolf](#giolf) - [giolfc](#giolfc) - [gmacml](#gmacml) - [gmkl](#gmkl) - [gmklc](#gmklc) - [gmpflf](#gmpflf) - [gmpich2](#gmpich2) - [gmpich](#gmpich) - [gmpit](#gmpit) - [gmpolf](#gmpolf) - [gmvapich2](#gmvapich2) - [gmvolf](#gmvolf) - [GNU](#gnu) - [goalf](#goalf) - [gobff](#gobff) - [goblf](#goblf) - [gofbf](#gofbf) - [golf](#golf) - [golfc](#golfc) - [gomkl](#gomkl) - [gomklc](#gomklc) - [gompi](#gompi) - [gompic](#gompic) - [goolf](#goolf) - [goolfc](#goolfc) - [gpsmpi](#gpsmpi) - [gpsolf](#gpsolf) - [gqacml](#gqacml) - [gsmpi](#gsmpi) - [gsolf](#gsolf) - [iccifort](#iccifort) - [iccifortcuda](#iccifortcuda) - [ictce](#ictce) - [ifbf](#ifbf) - [iibff](#iibff) - [iimkl](#iimkl) - [iimklc](#iimklc) - [iimpi](#iimpi) - [iimpic](#iimpic) - [iiqmpi](#iiqmpi) - [impich](#impich) - [impmkl](#impmkl) - [intel-compilers](#intel-compilers) - [intel-para](#intel-para) - [intel](#intel) - [intelcuda](#intelcuda) - [iofbf](#iofbf) - [iomkl](#iomkl) - [iomklc](#iomklc) - [iompi](#iompi) - [iompic](#iompic) - [ipsmpi](#ipsmpi) - [iqacml](#iqacml) - [ismkl](#ismkl) - [NVHPC](#nvhpc) - [nvofbf](#nvofbf) - [nvompi](#nvompi) - [nvompic](#nvompic) - [nvpsmpi](#nvpsmpi) - [nvpsmpic](#nvpsmpic) - [PGI](#pgi) - [pmkl](#pmkl) - [pomkl](#pomkl) - [pompi](#pompi) - [system](#system) - [xlcxlf](#xlcxlf) - [xlmpich2](#xlmpich2) - [xlmpich](#xlmpich) - [xlmvapich2](#xlmvapich2) - [xlompi](#xlompi) ## cgmpich @@ -1152,6 +1152,48 @@ option |description ``verbose`` |Verbose output |``False`` ``veryloose`` |Very loose precision |``False`` +## gmpflf + +### Available options for gmpflf toolchain + +option |description |default +-------------------------|-----------------------------------------------------------------------|--------- +``32bit`` |Compile 32bit target |``False`` +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Enable debug |``False`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``f2c`` |Generate code compatible with f2c and f77 |``False`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``loop`` |Automatic loop parallelisation |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``lto`` |Enable Link Time Optimization |``False`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options``|Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt|``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` + ## gmpich2 ### Available options for gmpich2 toolchain @@ -2266,7 +2308,7 @@ option |description ``noopt`` |Disable compiler optimizations |``False`` ``oneapi`` |Use oneAPI compilers icx/icpx/ifx instead of classic compilers |``None`` ``oneapi_c_cxx`` |Use oneAPI C/C++ compilers icx/icpx instead of classic Intel C/C++ compilers (auto-enabled for Intel compilers version 2022.2.0, or newer)|``None`` -``oneapi_fortran`` |Use oneAPI Fortran compiler ifx instead of classic Intel Fortran compiler |``False`` +``oneapi_fortran`` |Use oneAPI Fortran compiler ifx instead of classic Intel Fortran compiler (auto-enabled for Intel compilers version 2024.0.0, or newer) |``None`` ``openmp`` |Enable OpenMP |``False`` ``opt`` |High compiler optimizations |``False`` ``optarch`` |Enable architecture optimizations |``True`` @@ -2311,7 +2353,7 @@ option |description ``noopt`` |Disable compiler optimizations |``False`` ``oneapi`` |Use oneAPI compilers icx/icpx/ifx instead of classic compilers |``None`` ``oneapi_c_cxx`` |Use oneAPI C/C++ compilers icx/icpx instead of classic Intel C/C++ compilers (auto-enabled for Intel compilers version 2022.2.0, or newer)|``None`` -``oneapi_fortran`` |Use oneAPI Fortran compiler ifx instead of classic Intel Fortran compiler |``False`` +``oneapi_fortran`` |Use oneAPI Fortran compiler ifx instead of classic Intel Fortran compiler (auto-enabled for Intel compilers version 2024.0.0, or newer) |``None`` ``openmp`` |Enable OpenMP |``False`` ``opt`` |High compiler optimizations |``False`` ``optarch`` |Enable architecture optimizations |``True`` @@ -2355,7 +2397,7 @@ option |description ``noopt`` |Disable compiler optimizations |``False`` ``oneapi`` |Use oneAPI compilers icx/icpx/ifx instead of classic compilers |``None`` ``oneapi_c_cxx`` |Use oneAPI C/C++ compilers icx/icpx instead of classic Intel C/C++ compilers (auto-enabled for Intel compilers version 2022.2.0, or newer)|``None`` -``oneapi_fortran`` |Use oneAPI Fortran compiler ifx instead of classic Intel Fortran compiler |``False`` +``oneapi_fortran`` |Use oneAPI Fortran compiler ifx instead of classic Intel Fortran compiler (auto-enabled for Intel compilers version 2024.0.0, or newer) |``None`` ``openmp`` |Enable OpenMP |``False`` ``opt`` |High compiler optimizations |``False`` ``optarch`` |Enable architecture optimizations |``True`` @@ -2400,7 +2442,7 @@ option |description ``noopt`` |Disable compiler optimizations |``False`` ``oneapi`` |Use oneAPI compilers icx/icpx/ifx instead of classic compilers |``None`` ``oneapi_c_cxx`` |Use oneAPI C/C++ compilers icx/icpx instead of classic Intel C/C++ compilers (auto-enabled for Intel compilers version 2022.2.0, or newer)|``None`` -``oneapi_fortran`` |Use oneAPI Fortran compiler ifx instead of classic Intel Fortran compiler |``False`` +``oneapi_fortran`` |Use oneAPI Fortran compiler ifx instead of classic Intel Fortran compiler (auto-enabled for Intel compilers version 2024.0.0, or newer) |``None`` ``openmp`` |Enable OpenMP |``False`` ``opt`` |High compiler optimizations |``False`` ``optarch`` |Enable architecture optimizations |``True`` @@ -2444,7 +2486,7 @@ option |description ``noopt`` |Disable compiler optimizations |``False`` ``oneapi`` |Use oneAPI compilers icx/icpx/ifx instead of classic compilers |``None`` ``oneapi_c_cxx`` |Use oneAPI C/C++ compilers icx/icpx instead of classic Intel C/C++ compilers (auto-enabled for Intel compilers version 2022.2.0, or newer)|``None`` -``oneapi_fortran`` |Use oneAPI Fortran compiler ifx instead of classic Intel Fortran compiler |``False`` +``oneapi_fortran`` |Use oneAPI Fortran compiler ifx instead of classic Intel Fortran compiler (auto-enabled for Intel compilers version 2024.0.0, or newer) |``None`` ``openmp`` |Enable OpenMP |``False`` ``opt`` |High compiler optimizations |``False`` ``optarch`` |Enable architecture optimizations |``True`` @@ -2488,7 +2530,7 @@ option |description ``noopt`` |Disable compiler optimizations |``False`` ``oneapi`` |Use oneAPI compilers icx/icpx/ifx instead of classic compilers |``None`` ``oneapi_c_cxx`` |Use oneAPI C/C++ compilers icx/icpx instead of classic Intel C/C++ compilers (auto-enabled for Intel compilers version 2022.2.0, or newer)|``None`` -``oneapi_fortran`` |Use oneAPI Fortran compiler ifx instead of classic Intel Fortran compiler |``False`` +``oneapi_fortran`` |Use oneAPI Fortran compiler ifx instead of classic Intel Fortran compiler (auto-enabled for Intel compilers version 2024.0.0, or newer) |``None`` ``openmp`` |Enable OpenMP |``False`` ``opt`` |High compiler optimizations |``False`` ``optarch`` |Enable architecture optimizations |``True`` @@ -2701,7 +2743,7 @@ option |description ``noopt`` |Disable compiler optimizations |``False`` ``oneapi`` |Use oneAPI compilers icx/icpx/ifx instead of classic compilers |``None`` ``oneapi_c_cxx`` |Use oneAPI C/C++ compilers icx/icpx instead of classic Intel C/C++ compilers (auto-enabled for Intel compilers version 2022.2.0, or newer)|``None`` -``oneapi_fortran`` |Use oneAPI Fortran compiler ifx instead of classic Intel Fortran compiler |``False`` +``oneapi_fortran`` |Use oneAPI Fortran compiler ifx instead of classic Intel Fortran compiler (auto-enabled for Intel compilers version 2024.0.0, or newer) |``None`` ``openmp`` |Enable OpenMP |``False`` ``opt`` |High compiler optimizations |``False`` ``optarch`` |Enable architecture optimizations |``True`` @@ -2787,7 +2829,7 @@ option |description ``noopt`` |Disable compiler optimizations |``False`` ``oneapi`` |Use oneAPI compilers icx/icpx/ifx instead of classic compilers |``None`` ``oneapi_c_cxx`` |Use oneAPI C/C++ compilers icx/icpx instead of classic Intel C/C++ compilers (auto-enabled for Intel compilers version 2022.2.0, or newer)|``None`` -``oneapi_fortran`` |Use oneAPI Fortran compiler ifx instead of classic Intel Fortran compiler |``False`` +``oneapi_fortran`` |Use oneAPI Fortran compiler ifx instead of classic Intel Fortran compiler (auto-enabled for Intel compilers version 2024.0.0, or newer) |``None`` ``openmp`` |Enable OpenMP |``False`` ``opt`` |High compiler optimizations |``False`` ``optarch`` |Enable architecture optimizations |``True`` @@ -2874,7 +2916,7 @@ option |description ``noopt`` |Disable compiler optimizations |``False`` ``oneapi`` |Use oneAPI compilers icx/icpx/ifx instead of classic compilers |``None`` ``oneapi_c_cxx`` |Use oneAPI C/C++ compilers icx/icpx instead of classic Intel C/C++ compilers (auto-enabled for Intel compilers version 2022.2.0, or newer)|``None`` -``oneapi_fortran`` |Use oneAPI Fortran compiler ifx instead of classic Intel Fortran compiler |``False`` +``oneapi_fortran`` |Use oneAPI Fortran compiler ifx instead of classic Intel Fortran compiler (auto-enabled for Intel compilers version 2024.0.0, or newer) |``None`` ``openmp`` |Enable OpenMP |``False`` ``opt`` |High compiler optimizations |``False`` ``optarch`` |Enable architecture optimizations |``True`` @@ -2919,7 +2961,7 @@ option |description ``noopt`` |Disable compiler optimizations |``False`` ``oneapi`` |Use oneAPI compilers icx/icpx/ifx instead of classic compilers |``None`` ``oneapi_c_cxx`` |Use oneAPI C/C++ compilers icx/icpx instead of classic Intel C/C++ compilers (auto-enabled for Intel compilers version 2022.2.0, or newer)|``None`` -``oneapi_fortran`` |Use oneAPI Fortran compiler ifx instead of classic Intel Fortran compiler |``False`` +``oneapi_fortran`` |Use oneAPI Fortran compiler ifx instead of classic Intel Fortran compiler (auto-enabled for Intel compilers version 2024.0.0, or newer) |``None`` ``openmp`` |Enable OpenMP |``False`` ``opt`` |High compiler optimizations |``False`` ``optarch`` |Enable architecture optimizations |``True`` @@ -3006,7 +3048,7 @@ option |description ``noopt`` |Disable compiler optimizations |``False`` ``oneapi`` |Use oneAPI compilers icx/icpx/ifx instead of classic compilers |``None`` ``oneapi_c_cxx`` |Use oneAPI C/C++ compilers icx/icpx instead of classic Intel C/C++ compilers (auto-enabled for Intel compilers version 2022.2.0, or newer)|``None`` -``oneapi_fortran`` |Use oneAPI Fortran compiler ifx instead of classic Intel Fortran compiler |``False`` +``oneapi_fortran`` |Use oneAPI Fortran compiler ifx instead of classic Intel Fortran compiler (auto-enabled for Intel compilers version 2024.0.0, or newer) |``None`` ``openmp`` |Enable OpenMP |``False`` ``opt`` |High compiler optimizations |``False`` ``optarch`` |Enable architecture optimizations |``True`` diff --git a/docs/version-specific/toolchains.md b/docs/version-specific/toolchains.md index ae399fd0e..4b97611a8 100644 --- a/docs/version-specific/toolchains.md +++ b/docs/version-specific/toolchains.md @@ -30,6 +30,7 @@ Name |Compiler(s) |MPI |Linear algebra |FFT **gmacml** |GCC |MVAPICH2 |ACML, ScaLAPACK |FFTW **gmkl** |GCC |*(none)* |imkl |imkl **gmklc** |GCC, CUDA |*(none)* |imkl |imkl +**gmpflf** |GCC |MPICH |FlexiBLAS, ScaLAPACK |FFTW **gmpich** |GCC |MPICH |*(none)* |*(none)* **gmpich2** |GCC |MPICH2 |*(none)* |*(none)* **gmpit** |GCC |MPItrampoline|*(none)* |*(none)* From aa48197ce227a395414ccd7f99a4544e06e3909b Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 12 Sep 2024 22:13:25 +0200 Subject: [PATCH 2/2] fix typo --- docs/version-specific/generic-easyblocks.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/version-specific/generic-easyblocks.md b/docs/version-specific/generic-easyblocks.md index 3b1eccdf3..21a5b32aa 100644 --- a/docs/version-specific/generic-easyblocks.md +++ b/docs/version-specific/generic-easyblocks.md @@ -890,7 +890,7 @@ easyconfig parameter |description Builds and installs Julia Packages. -Julia environement setup during installation: +Julia environment setup during installation: - initialize new Julia environment in 'environments' subdir in installation directory - remove paths in user depot '~/.julia' from DEPOT_PATH and LOAD_PATH - put installation directory as top DEPOT_PATH, the target depot for installations with Pkg