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@ebi-gene-expression-group

EBI Gene Expression Group

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  1. anatomogram anatomogram Public

    Anatomogram illustrating Expression Atlas experiments

    JavaScript 39 20

  2. scanpy-scripts scanpy-scripts Public

    Scripts for using scanpy

    Python 30 13

  3. atlas atlas Public archive

    Expression Atlas

    Java 26 5

  4. r-seurat-scripts r-seurat-scripts Public

    Scripts to install as a Bioconda package for making workflows

    R 16 5

  5. container-galaxy-sc-tertiary container-galaxy-sc-tertiary Public

    Galaxy container for single cell RNA-Seq tertiary analysis tools

    Python 16 13

  6. scxa-workflows scxa-workflows Public

    Higher level repo for aggregating all of Atlas workflow logic for Single Cell

    Shell 13 2

Repositories

Showing 10 of 181 repositories
  • container-galaxy-sc-tertiary Public

    Galaxy container for single cell RNA-Seq tertiary analysis tools

    ebi-gene-expression-group/container-galaxy-sc-tertiary’s past year of commit activity
    Python 16 MIT 13 26 12 Updated Oct 14, 2024
  • scxa-workflows Public

    Higher level repo for aggregating all of Atlas workflow logic for Single Cell

    ebi-gene-expression-group/scxa-workflows’s past year of commit activity
    Shell 13 Apache-2.0 2 5 2 Updated Oct 11, 2024
  • scxa-bundle-workflow Public

    Workflow for making bundles for Single-cell Expression Atlas

    ebi-gene-expression-group/scxa-bundle-workflow’s past year of commit activity
    Nextflow 0 0 1 1 Updated Oct 11, 2024
  • scxa-aggregation-workflow Public

    Aggregation component for SCXA workflows

    ebi-gene-expression-group/scxa-aggregation-workflow’s past year of commit activity
    Nextflow 0 1 0 1 Updated Oct 11, 2024
  • scxa-droplet-quantification-workflow Public

    Quantification component for droplet-based studies

    ebi-gene-expression-group/scxa-droplet-quantification-workflow’s past year of commit activity
    Nextflow 5 1 0 1 Updated Oct 11, 2024
  • scxa-smartseq-quantification-workflow Public

    The SCXA smart-seq quantification workflow

    ebi-gene-expression-group/scxa-smartseq-quantification-workflow’s past year of commit activity
    Nextflow 0 1 0 1 Updated Oct 11, 2024
  • scxa-control-workflow Public

    Master Nextflow workflow for running each component of the SMART-seq and droplet SCXA pipelines

    ebi-gene-expression-group/scxa-control-workflow’s past year of commit activity
    R 4 2 2 1 Updated Oct 11, 2024
  • atlas-gtex-bulk Public

    Atlas analysis for controlled-access GTEx bulk datasets

    ebi-gene-expression-group/atlas-gtex-bulk’s past year of commit activity
    Python 0 0 4 2 Updated Oct 11, 2024
  • atlas-ca-analysis Public

    Atlas analysis for controlled-access bulk datasets, such as EGA

    ebi-gene-expression-group/atlas-ca-analysis’s past year of commit activity
    0 Apache-2.0 0 0 1 Updated Oct 10, 2024
  • atlas-web-single-cell Public

    Single Cell Expression Atlas web application

    ebi-gene-expression-group/atlas-web-single-cell’s past year of commit activity
    Java 5 Apache-2.0 5 73 4 Updated Oct 10, 2024
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