From 7d9456a2db5c891fad38af385f55d2ff7031f8c0 Mon Sep 17 00:00:00 2001 From: anjaf Date: Tue, 14 Sep 2021 13:52:04 +0100 Subject: [PATCH] Re-map Sars-Cov to virus taxon (#32) --- zoomage_report.CURATED.tsv | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/zoomage_report.CURATED.tsv b/zoomage_report.CURATED.tsv index b2a8a7b..10861c3 100644 --- a/zoomage_report.CURATED.tsv +++ b/zoomage_report.CURATED.tsv @@ -915,7 +915,7 @@ infect none http://www.ebi.ac.uk/efo/EFO_0001461 E-GEOD-13930 Reference 6dpi 3 E infect none http://www.ebi.ac.uk/efo/EFO_0001461 E-GEOD-15236 Mock pft1 leaf, rep4 Eleanor Williams 01/10/14 18:32 infect none http://www.ebi.ac.uk/efo/EFO_0001461 E-GEOD-17400 GSM432210 Eleanor Williams 01/10/14 18:32 infect Porphyromonas gingivalis http://purl.obolibrary.org/obo/NCBITaxon_837 E-GEOD-12121 HIGK cells infected with Porphyromonas gingivalis, biological rep4 Eleanor Williams 01/10/14 18:32 -infect SARS-CoV http://www.ebi.ac.uk/efo/EFO_0000694 E-GEOD-17400 GSM432333 Eleanor Williams 01/10/14 18:32 +infect SARS-CoV http://purl.obolibrary.org/obo/NCBITaxon_694009 E-GEOD-17400 GSM432333 Anja Fullgrabe 03/09/2021 17:20 infect Streptococcus gordonii http://purl.obolibrary.org/obo/NCBITaxon_1302 E-GEOD-12121 HIGK cells infected with Streptococcus gordonii, biological rep2 Eleanor Williams 01/10/14 18:32 infect Trypanosoma brucei TREU927 http://purl.obolibrary.org/obo/NCBITaxon_185431 E-GEOD-17049 GSM426742 Eleanor Williams 01/10/14 18:32 infect uninfected http://www.ebi.ac.uk/efo/EFO_0001460 E-GEOD-12108 Uninfected D1_UT Eleanor Williams 01/10/14 18:32 @@ -13895,7 +13895,7 @@ infect Pseudomonas aeruginosa http://purl.obolibrary.org/obo/NCBITaxon_287 E-GEO infect Pseudomonas syringae pv. tomato DC3000 http://purl.obolibrary.org/obo/NCBITaxon_223283 E-GEOD-19264 GSM477955 Laura Huerta 03/03/16 10:00 infect Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 http://purl.obolibrary.org/obo/NCBITaxon_216597 E-MEXP-1862 Sample_8.3 Laura Huerta 03/03/16 10:00 infect Salmonella typhimurium http://purl.obolibrary.org/obo/NCBITaxon_90371 E-MEXP-1862 ebi.ac.uk:MAGETabulator:E-MEXP-1862.rr3_2.DcRNAAB2.2Sal.CHP.DerivedBioAssay Laura Huerta 03/03/16 10:00 -infect SARS-CoV http://www.ebi.ac.uk/efo/EFO_0000694 E-GEOD-17400 GSM432333 Laura Huerta 03/03/16 10:00 +infect SARS-CoV http://purl.obolibrary.org/obo/NCBITaxon_694009 E-GEOD-17400 GSM432333 Anja Fullgrabe 03/09/2021 17:20 infect Seoul hantavirus http://purl.obolibrary.org/obo/NCBITaxon_11608 E-GEOD-488 ebi.ac.uk:Tab2MAGE:E-GEOD-488.27.DerivedBioAssay Laura Huerta 03/03/16 10:00 infect Staphylococcus aureus http://purl.obolibrary.org/obo/NCBITaxon_1280 E-GEOD-2405 ebi.ac.uk:Tab2MAGE:E-GEOD-2405.137.DerivedBioAssay Laura Huerta 03/03/16 10:00 infect Staphylococcus aureus http://purl.obolibrary.org/obo/NCBITaxon_1280 E-GEOD-6802 S_aureus_rep1 Laura Huerta 03/03/16 10:00 @@ -28355,7 +28355,7 @@ infect none http://www.ebi.ac.uk/efo/EFO_0001461 E-GEOD-13930 Reference 6dpi 3 E infect none http://www.ebi.ac.uk/efo/EFO_0001461 E-GEOD-15236 Mock pft1 leaf, rep4 Eleanor Williams 01/10/2014 18:32 infect none http://www.ebi.ac.uk/efo/EFO_0001461 E-GEOD-17400 GSM432210 Eleanor Williams 01/10/2014 18:32 infect Porphyromonas gingivalis http://purl.obolibrary.org/obo/NCBITaxon_837 E-GEOD-12121 HIGK cells infected with Porphyromonas gingivalis, biological rep4 Eleanor Williams 01/10/2014 18:32 -infect SARS-CoV http://www.ebi.ac.uk/efo/EFO_0000694 E-GEOD-17400 GSM432333 Eleanor Williams 01/10/2014 18:32 +infect SARS-CoV http://purl.obolibrary.org/obo/NCBITaxon_694009 E-GEOD-17400 GSM432333 Anja Fullgrabe 03/09/2021 17:20 infect Streptococcus gordonii http://purl.obolibrary.org/obo/NCBITaxon_1302 E-GEOD-12121 HIGK cells infected with Streptococcus gordonii, biological rep2 Eleanor Williams 01/10/2014 18:32 infect Trypanosoma brucei TREU927 http://purl.obolibrary.org/obo/NCBITaxon_185431 E-GEOD-17049 GSM426742 Eleanor Williams 01/10/2014 18:32 infect uninfected http://www.ebi.ac.uk/efo/EFO_0001460 E-GEOD-12108 Uninfected D1_UT Eleanor Williams 01/10/2014 18:32 @@ -41335,7 +41335,7 @@ infect Pseudomonas aeruginosa http://purl.obolibrary.org/obo/NCBITaxon_287 E-GEO infect Pseudomonas syringae pv. tomato DC3000 http://purl.obolibrary.org/obo/NCBITaxon_223283 E-GEOD-19264 GSM477955 Laura Huerta 03/03/2016 10:00 infect Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 http://purl.obolibrary.org/obo/NCBITaxon_216597 E-MEXP-1862 Sample_8.3 Laura Huerta 03/03/2016 10:00 infect Salmonella typhimurium http://purl.obolibrary.org/obo/NCBITaxon_90371 E-MEXP-1862 ebi.ac.uk:MAGETabulator:E-MEXP-1862.rr3_2.DcRNAAB2.2Sal.CHP.DerivedBioAssay Laura Huerta 03/03/2016 10:00 -infect SARS-CoV http://www.ebi.ac.uk/efo/EFO_0000694 E-GEOD-17400 GSM432333 Laura Huerta 03/03/2016 10:00 +infect SARS-CoV http://purl.obolibrary.org/obo/NCBITaxon_694009 E-GEOD-17400 GSM432333 Anja Fullgrabe 03/09/2021 17:20 infect Seoul hantavirus http://purl.obolibrary.org/obo/NCBITaxon_11608 E-GEOD-488 ebi.ac.uk:Tab2MAGE:E-GEOD-488.27.DerivedBioAssay Laura Huerta 03/03/2016 10:00 infect Staphylococcus aureus http://purl.obolibrary.org/obo/NCBITaxon_1280 E-GEOD-2405 ebi.ac.uk:Tab2MAGE:E-GEOD-2405.137.DerivedBioAssay Laura Huerta 03/03/2016 10:00 infect Staphylococcus aureus http://purl.obolibrary.org/obo/NCBITaxon_1280 E-GEOD-6802 S_aureus_rep1 Laura Huerta 03/03/2016 10:00