diff --git a/bin/load_db_scxa_dimred.sh b/bin/load_db_scxa_dimred.sh index 2878f07..c9972ad 100755 --- a/bin/load_db_scxa_dimred.sh +++ b/bin/load_db_scxa_dimred.sh @@ -13,7 +13,7 @@ EXP_ID=${EXP_ID:-$2} DIMRED_TYPE=${DIMRED_TYPE:-$3} DIMRED_FILE_PATH=${DIMRED_FILE_PATH:-$4} DIMRED_PARAM_JSON=${DIMRED_PARAM_JSON:-$5} -SCRATCH_DIR=${SCRATCH_DIR:-"$DIMRED_FILE_PATH"} +SCRATCH_DIR=${SCRATCH_DIR:-"$(dirname ${DIMRED_FILE_PATH})"} # Check that necessary environment variables are defined. [ -n ${dbConnection+x} ] || (echo "Env var dbConnection for the database connection needs to be defined. This includes the database name." && exit 1)