Switch to using Python to convert cluster files from wide to long format #76
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The db-scxa base container is updated here in order to add Python and pandas. These additions will allow the new Python scripts to be tested in the CI of this repo, where it is used. |
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This branch introduces a Python version of
wideSCCluster2longSCCluster.R, and switching to using the Python script when preparing files for loading to the database. The impetus for this is the ingestion of some externally-analysed experiments, some of which don't have clusters and fail when processed by the R script.