diff --git a/.copier-answers.env b/.copier-answers.env index 7413a3f..3de6303 100644 --- a/.copier-answers.env +++ b/.copier-answers.env @@ -1,3 +1,3 @@ # Changes here will be overwritten by Copier -project_slug=python +package_dir=cmem_plugin_python diff --git a/.copier-answers.yml b/.copier-answers.yml index 8682f5d..490f852 100644 --- a/.copier-answers.yml +++ b/.copier-answers.yml @@ -1,10 +1,11 @@ # Changes here will be overwritten by Copier -_commit: v6.0.1 +_commit: v7.0.0 _src_path: gh:eccenca/cmem-plugin-template -author_mail: sebastian.tramp@eccenca.com -author_name: Sebastian Tramp -github_page: '' +author_mail: cmempy-developer@eccenca.com +author_name: eccenca GmbH +github_page: https://github.com/eccenca/cmem-plugin-python project_description: Write ad-hoc transformations and workflow tasks with Python. project_slug: python -pypi: false +project_type: plugin +pypi: true diff --git a/.github/workflows/check.yml b/.github/workflows/check.yml index d5bd94d..96879bf 100644 --- a/.github/workflows/check.yml +++ b/.github/workflows/check.yml @@ -23,11 +23,11 @@ jobs: uses: actions/checkout@v4 - name: Install Task - uses: arduino/setup-task@v1 + uses: arduino/setup-task@v2 - name: Set up python id: setup-python - uses: actions/setup-python@v4 + uses: actions/setup-python@v5 with: python-version: '3.11' diff --git a/.github/workflows/publish.yml b/.github/workflows/publish.yml index 664ec5e..24a4756 100644 --- a/.github/workflows/publish.yml +++ b/.github/workflows/publish.yml @@ -20,11 +20,11 @@ jobs: uses: actions/checkout@v4 - name: Install Task - uses: arduino/setup-task@v1 + uses: arduino/setup-task@v2 - name: Set up python id: setup-python - uses: actions/setup-python@v4 + uses: actions/setup-python@v5 with: python-version: '3.11' diff --git a/.idea/cmem-plugin-python.iml b/.idea/cmem-plugin-python.iml index 0d19fa0..b7feaf9 100644 --- a/.idea/cmem-plugin-python.iml +++ b/.idea/cmem-plugin-python.iml @@ -9,7 +9,7 @@ - + diff --git a/.tasks-plugin.yml b/.tasks-plugin.yml new file mode 100644 index 0000000..5eccd08 --- /dev/null +++ b/.tasks-plugin.yml @@ -0,0 +1,19 @@ +# https://taskfile.dev +--- +version: '3' + +tasks: + + install: + desc: Install plugin package in Corporate Memory + cmds: + - task build + - poetry run cmemc admin workspace python install dist/cmem_plugin_python*.tar.gz + - poetry run cmemc admin workspace python list-plugins + + uninstall: + desc: Unnstall plugin package in Corporate Memory + cmds: + - task build + - poetry run cmemc admin workspace python uninstall cmem-plugin-python + - poetry run cmemc admin workspace python list-plugins diff --git a/README-public.md b/README-public.md index 1841c87..e562344 100644 --- a/README-public.md +++ b/README-public.md @@ -2,12 +2,24 @@ Write ad-hoc transformations and workflow tasks with Python. -This is a plugin for [eccenca](https://eccenca.com) [Corporate Memory](https://documentation.eccenca.com). +[![eccenca Corporate Memory][cmem-shield]][cmem-link] -You can install it with the [cmemc](https://eccenca.com/go/cmemc) command line -clients like this: +This is a plugin for [eccenca](https://eccenca.com) [Corporate Memory](https://documentation.eccenca.com). You can install it with the [cmemc](https://eccenca.com/go/cmemc) command line clients like this: ``` cmemc admin workspace python install cmem-plugin-python ``` +[![workflow](https://github.com/eccenca/cmem-plugin-python/actions/workflows/check.yml/badge.svg)](https://github.com/eccenca/cmem-plugin-python/actions) [![pypi version](https://img.shields.io/pypi/v/cmem-plugin-python)](https://pypi.org/project/cmem-plugin-python) [![license](https://img.shields.io/pypi/l/cmem-plugin-python)](https://pypi.org/project/cmem-plugin-python) +[![poetry][poetry-shield]][poetry-link] [![ruff][ruff-shield]][ruff-link] [![mypy][mypy-shield]][mypy-link] [![copier][copier-shield]][copier] + +[cmem-link]: https://documentation.eccenca.com +[cmem-shield]: https://img.shields.io/endpoint?url=https://dev.documentation.eccenca.com/badge.json +[poetry-link]: https://python-poetry.org/ +[poetry-shield]: https://img.shields.io/endpoint?url=https://python-poetry.org/badge/v0.json +[ruff-link]: https://docs.astral.sh/ruff/ +[ruff-shield]: https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/astral-sh/ruff/main/assets/badge/v2.json&label=Code%20Style +[mypy-link]: https://mypy-lang.org/ +[mypy-shield]: https://www.mypy-lang.org/static/mypy_badge.svg +[copier]: https://copier.readthedocs.io/ +[copier-shield]: https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/copier-org/copier/master/img/badge/badge-grayscale-inverted-border-purple.json diff --git a/README.md b/README.md index b40e8d7..6daef8b 100644 --- a/README.md +++ b/README.md @@ -2,24 +2,34 @@ Write ad-hoc transformations and workflow tasks with Python. -[![eccenca Corporate Memory](https://img.shields.io/badge/eccenca-Corporate%20Memory-orange)](https://documentation.eccenca.com) - -## Development - -- Run [task](https://taskfile.dev/) to see all major development tasks. -- Use [pre-commit](https://pre-commit.com/) to avoid errors before commit. -- This repository was created with [this copier template](https://github.com/eccenca/cmem-plugin-template). - -## Usage - Do not use in production! ``` eval $(cmemc -c my-cmem config eval) -task clean check deploy +task clean check plugin:install ``` 😈 ![Usage](./usage.png) +[![eccenca Corporate Memory][cmem-shield]][cmem-link][![workflow](https://github.com/eccenca/cmem-plugin-python/actions/workflows/check.yml/badge.svg)](https://github.com/eccenca/cmem-plugin-python/actions) [![pypi version](https://img.shields.io/pypi/v/cmem-plugin-python)](https://pypi.org/project/cmem-plugin-python) [![license](https://img.shields.io/pypi/l/cmem-plugin-python)](https://pypi.org/project/cmem-plugin-python) +[![poetry][poetry-shield]][poetry-link] [![ruff][ruff-shield]][ruff-link] [![mypy][mypy-shield]][mypy-link] [![copier][copier-shield]][copier] + +## Development + +- Run [task](https://taskfile.dev/) to see all major development tasks. +- Use [pre-commit](https://pre-commit.com/) to avoid errors before commit. +- This repository was created with [this copier template](https://github.com/eccenca/cmem-plugin-template). + + +[cmem-link]: https://documentation.eccenca.com +[cmem-shield]: https://img.shields.io/endpoint?url=https://dev.documentation.eccenca.com/badge.json +[poetry-link]: https://python-poetry.org/ +[poetry-shield]: https://img.shields.io/endpoint?url=https://python-poetry.org/badge/v0.json +[ruff-link]: https://docs.astral.sh/ruff/ +[ruff-shield]: https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/astral-sh/ruff/main/assets/badge/v2.json&label=Code%20Style +[mypy-link]: https://mypy-lang.org/ +[mypy-shield]: https://www.mypy-lang.org/static/mypy_badge.svg +[copier]: https://copier.readthedocs.io/ +[copier-shield]: https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/copier-org/copier/master/img/badge/badge-grayscale-inverted-border-purple.json diff --git a/Taskfile.yaml b/Taskfile.yaml index 5578f6a..3f3835b 100644 --- a/Taskfile.yaml +++ b/Taskfile.yaml @@ -1,4 +1,7 @@ # https://taskfile.dev +# +# This is a generated file. We dot not suggest to edit it. +# Instead, create a file `TaskfileCustom.yml` and add your additions there. --- version: '3' @@ -10,13 +13,16 @@ dotenv: ['.copier-answers.env', '.env'] - check:prepare vars: - PACKAGE: cmem_plugin_$project_slug + PACKAGE: $package_dir DIST_DIR: dist includes: custom: taskfile: ./TaskfileCustom.yaml optional: true + plugin: + taskfile: .tasks-plugin.yml + optional: true tasks: @@ -43,6 +49,10 @@ tasks: Check poetry versioning plugin. Currently not under Windows run: once preconditions: + - sh: '[ -d .git ]' + msg: > + Your newly created project directory needs to be initialized + as a git repository. - sh: '[[ {{.PDV_VERSION}} > {{.PDV_VERSION_MIN}} ]]' msg: > This project needs the poetry-dynamic-versioning @@ -113,11 +123,13 @@ tasks: poetry run pytest --junitxml={{.JUNIT_FILE}} --cov-report term --cov-report xml:{{.COVERAGE_FILE}} --cov-report html:{{.COVERAGE_DIR}} --cov={{.PACKAGE}} + --html={{.HTML_FILE}} --self-contained-html - platforms: [darwin, linux] cmd: > poetry run pytest --memray --junitxml={{.JUNIT_FILE}} --cov-report term --cov-report xml:{{.COVERAGE_FILE}} --cov-report html:{{.COVERAGE_DIR}} --cov={{.PACKAGE}} + --html={{.HTML_FILE}} --self-contained-html - cmd: > poetry run genbadge coverage -l -i {{.COVERAGE_FILE}} -o {{.BADGE_COVERAGE}} @@ -125,11 +137,12 @@ tasks: poetry run genbadge tests -l -i {{.JUNIT_FILE}} -o {{.BADGE_TESTS}} vars: - JUNIT_FILE: ./{{.DIST_DIR}}/junit-pytest.xml - COVERAGE_FILE: ./{{.DIST_DIR}}/coverage.xml - COVERAGE_DIR: ./{{.DIST_DIR}}/coverage BADGE_COVERAGE: ./{{.DIST_DIR}}/badge-coverage.svg BADGE_TESTS: ./{{.DIST_DIR}}/badge-tests.svg + COVERAGE_DIR: ./{{.DIST_DIR}}/coverage + COVERAGE_FILE: ./{{.DIST_DIR}}/coverage.xml + HTML_FILE: ./{{.DIST_DIR}}/pytest.html + JUNIT_FILE: ./{{.DIST_DIR}}/junit-pytest.xml check:mypy: desc: Complain about typing errors @@ -144,30 +157,22 @@ tasks: <<: *preparation cmds: # ignore 51358 safety - dev dependency only - # ignore 61489 pillow - dev dependency only - - poetry run safety check -i 51358 -i 61489 + # ignore 67599 pip - dev dependency only + # ignore 70612 jinja2 - dev dependency only + - poetry run safety check -i 51358 -i 67599 -i 70612 check:ruff: desc: Complain about everything else <<: *preparation cmds: - - poetry run ruff check --show-source tests {{.PACKAGE}} - poetry run ruff check --exit-zero tests {{.PACKAGE}} {{.XML_PARAMS}} + - poetry run ruff check --output-format=concise tests {{.PACKAGE}} - poetry run ruff format --check tests {{.PACKAGE}} vars: JUNIT_FILE: ./{{.DIST_DIR}}/junit-ruff.xml XML_PARAMS: --output-format junit --output-file {{.JUNIT_FILE}} # }}} - # {{{ build and deploy tasks - - deploy: - desc: Install plugin package in Corporate Memory - deps: - - build - cmds: - - cmemc admin workspace python install dist/*.tar.gz - - cmemc admin workspace python list-plugins build: desc: Build a tarball and a wheel package @@ -178,5 +183,3 @@ tasks: cmds: - poetry build -# }}} - diff --git a/cmem_plugin_python/__init__.py b/cmem_plugin_python/__init__.py index a4386d0..d8aa0c9 100644 --- a/cmem_plugin_python/__init__.py +++ b/cmem_plugin_python/__init__.py @@ -1 +1 @@ -"""python - main package""" +"""cmem-plugin-python""" diff --git a/cmem_plugin_python/transform.py b/cmem_plugin_python/transform.py index 41e7a3d..e4533fe 100644 --- a/cmem_plugin_python/transform.py +++ b/cmem_plugin_python/transform.py @@ -1,4 +1,5 @@ """Python code transform plugin module""" + from collections.abc import Sequence from typing import Any diff --git a/cmem_plugin_python/workflow.py b/cmem_plugin_python/workflow.py index 920bbed..a662565 100644 --- a/cmem_plugin_python/workflow.py +++ b/cmem_plugin_python/workflow.py @@ -1,11 +1,12 @@ """Python code workflow plugin module""" -from collections.abc import Iterator, Sequence + +from collections.abc import Sequence from types import SimpleNamespace from typing import Any from cmem_plugin_base.dataintegration.context import ExecutionContext from cmem_plugin_base.dataintegration.description import Icon, Plugin, PluginParameter -from cmem_plugin_base.dataintegration.entity import Entities, Entity +from cmem_plugin_base.dataintegration.entity import Entities from cmem_plugin_base.dataintegration.parameter.code import PythonCode from cmem_plugin_base.dataintegration.plugins import WorkflowPlugin @@ -22,13 +23,13 @@ # e.g. if you fetch data from the web from cmem_plugin_base.dataintegration import ports input_ports = ports.FixedNumberOfInputs([])""" -examples_init.single_input_flexible = """# a single port with flexible schema -# e.g. to process everything which comes in +examples_init.single_input_flexible = """# A single port with flexible schema +# e.g. to process everything that comes in from cmem_plugin_base.dataintegration import ports input_ports = ports.FixedNumberOfInputs( [ports.FlexibleSchemaPort()] )""" -examples_init.single_input_fixed = """# a single port with a fixed schema +examples_init.single_input_fixed = """# A single port with a fixed schema # e.g. to fetch data from a dataset from cmem_plugin_base.dataintegration import ports, entity my_schema = entity.EntitySchema( @@ -44,7 +45,7 @@ examples_init.no_output = """# no output port # e.g. if you post data to the web output_port = None""" -examples_init.fixed_output = """# an output port with fixed schema +examples_init.fixed_output = """# An output port with a fixed schema from cmem_plugin_base.dataintegration import ports, entity my_schema = entity.EntitySchema( type_uri="urn:x-example:output", @@ -63,7 +64,7 @@ except IndexError: raise ValueError("Please connect a task to the first input port.") """ -examples_execute.randoms = """# create 1000 random strings and output them with a custom schema +examples_execute.randoms = """# Create 1000 random strings and output them with a custom schema from uuid import uuid4 from secrets import token_hex from cmem_plugin_base.dataintegration import entity @@ -87,17 +88,17 @@ The "configuration" is split into two code fields: initialization and execution. -## Initialization +## Initialization -The initialization code is executed on task creation and update. -It is optional and can be used to configure input and output ports of the task as well as to +The initialization code is executed on task creation and task update. +It is optional and can be used to configure the input and output ports of the task as well as to prepare data for the execution phase. Note that the execution scope of this code is empty. -All used objects needs to be imported first. +All used objects need to be imported first. ### Specify input ports -In order to specify input ports, you have to define the variable `input_ports`. +To specify input ports, you have to define the variable `input_ports`. Here are some valid examples. If you do not specify any input ports, the default behavior is a flexible number of flexible schema input ports. @@ -116,7 +117,7 @@ ### Specify the output port -In order to specify the output port, you have to define the variable `output_port`. +To specify the output port, you have to define the variable `output_port`. Here are some valid examples. If you do not specify the output port, the default behavior is a flexible schema output port. @@ -138,7 +139,7 @@ data["output"] = ":-)" ``` -## Execution +## Execution The execution code is interpreted in the context of an executed workflow. The following variables are available in the scope of the code execution: @@ -147,11 +148,11 @@ the to task in the workflow. Have a look at [the entities documentation]({docu_links.entities}) for more information. - `context` - an `ExecutionContext` object, which holds information about the system, - the user the current task and more. Have a look + the user the current task, and more. Have a look at [the context object documentation]({docu_links.context}) for more information. - `data` - a `dict` of arbitrary data, which was optionally added by the initialization code. -In order to provide data for the next workflow task in the workflow, a `result` +To provide data for the next workflow task in the workflow, a `result` variable of type `Entities` needs to be prepared. Here are some valid examples: @@ -187,15 +188,13 @@ parameters=[ PluginParameter( name="init_code", - label="Initialization", + label="Python source code for the initialization phase.", default_value="", - description="Python source code for the initialization phase (see documentation).", ), PluginParameter( name="execute_code", - label="Execution", + label="Python source code for the execution phase", default_value="", - description="Python source code for the execution phase (see documentation).", ), ], ) @@ -216,12 +215,11 @@ def __init__(self, init_code: PythonCode, execute_code: PythonCode): self.input_ports = scope["input_ports"] if "output_port" in scope: self.output_port = scope["output_port"] - self.data = scope["data"] if "data" in scope else {} + self.data = scope.get("data", {}) def execute(self, inputs: Sequence[Entities], context: ExecutionContext) -> Entities | None: """Start the plugin in workflow context.""" self.log.info("Start doing bad things with custom code.") scope: dict[str, Any] = {"inputs": inputs, "context": context, "data": self.data} exec(str(self.execute_code), scope) # nosec # noqa: S102 - result: Iterator[Entity] | None = scope["result"] if "result" in scope else None - return result + return scope.get("result") diff --git a/poetry.lock b/poetry.lock index e87e575..eb9e3ce 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,113 +1,149 @@ -# This file is automatically @generated by Poetry 1.7.0 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.8.3 and should not be changed by hand. + +[[package]] +name = "beautifulsoup4" +version = "4.12.3" +description = "Screen-scraping library" +optional = false +python-versions = ">=3.6.0" +files = [ + {file = "beautifulsoup4-4.12.3-py3-none-any.whl", hash = "sha256:b80878c9f40111313e55da8ba20bdba06d8fa3969fc68304167741bbf9e082ed"}, + {file = "beautifulsoup4-4.12.3.tar.gz", hash = "sha256:74e3d1928edc070d21748185c46e3fb33490f22f52a3addee9aee0f4f7781051"}, +] + +[package.dependencies] +soupsieve = ">1.2" + +[package.extras] +cchardet = ["cchardet"] +chardet = ["chardet"] +charset-normalizer = ["charset-normalizer"] +html5lib = ["html5lib"] +lxml = ["lxml"] [[package]] name = "certifi" -version = "2023.11.17" +version = "2024.8.30" description = "Python package for providing Mozilla's CA Bundle." optional = false python-versions = ">=3.6" files = [ - {file = "certifi-2023.11.17-py3-none-any.whl", hash = "sha256:e036ab49d5b79556f99cfc2d9320b34cfbe5be05c5871b51de9329f0603b0474"}, - {file = "certifi-2023.11.17.tar.gz", hash = "sha256:9b469f3a900bf28dc19b8cfbf8019bf47f7fdd1a65a1d4ffb98fc14166beb4d1"}, + {file = "certifi-2024.8.30-py3-none-any.whl", hash = "sha256:922820b53db7a7257ffbda3f597266d435245903d80737e34f8a45ff3e3230d8"}, + {file = "certifi-2024.8.30.tar.gz", hash = "sha256:bec941d2aa8195e248a60b31ff9f0558284cf01a52591ceda73ea9afffd69fd9"}, ] [[package]] name = "charset-normalizer" -version = "3.3.2" +version = "3.4.0" description = "The Real First Universal Charset Detector. 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[metadata] lock-version = "2.0" python-versions = "^3.11" -content-hash = "7e779c56e8e80cd00d58446657134fb116aa993b35a9d11c9afb79b2b5cc324a" +content-hash = "a36a7248df2ef65f5b27793226efec4129a756fd0d0ba37a7988b800c3784ffb" diff --git a/pyproject.toml b/pyproject.toml index 08e32d7..4be6d4f 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -3,35 +3,37 @@ name = "cmem-plugin-python" version = "0.0.0" license = "Apache-2.0" description = "Write ad-hoc transformations and workflow tasks with Python." -authors = ["Sebastian Tramp "] +authors = ["eccenca GmbH "] classifiers = [ - "Development Status :: 4 - Beta", - "Environment :: Plugins", - "Topic :: Software Development :: Libraries :: Python Modules" + "Development Status :: 4 - Beta","Environment :: Plugins", ] readme = "README-public.md" keywords = [ "eccenca Corporate Memory", "plugin" ] - +homepage = "https://github.com/eccenca/cmem-plugin-python" [tool.poetry.dependencies] # if you need to change python version here, change it also in .python-version python = "^3.11" [tool.poetry.dependencies.cmem-plugin-base] -version = "^4.3.0" +version = "^4.7.0" allow-prereleases = false +[tool.poetry.group.dev.dependencies.cmem-cmemc] +version = "^24.2.0" + [tool.poetry.group.dev.dependencies] genbadge = {extras = ["coverage"], version = "^1.1.1"} -mypy = "^1.2.0" -pip = ">=23.3" # Avoid safety issue 62044 for pip less than 23.3 -pytest = "^7.3.1" -pytest-cov = "^4.1.0" +mypy = "^1.11.1" +pip = "^24" +pytest = "^8.3.2" +pytest-cov = "^5.0.0" pytest-dotenv = "^0.5.2" -pytest-memray = { version = "^1.5.0", markers = "platform_system != 'Windows'" } -ruff = "^0.1.5" +pytest-html = "^4.1.1" +pytest-memray = { version = "^1.7.0", markers = "platform_system != 'Windows'" } +ruff = "^0.6.1" safety = "^1.10.3" types-requests = "^2.31.0.10" @@ -52,6 +54,18 @@ ignore_missing_imports = true [tool.pytest.ini_options] addopts = "" +[tool.coverage.report] +exclude_also = [ + "def __repr__", + "if self.debug:", + "if settings.DEBUG", + "raise AssertionError", + "raise NotImplementedError", + "if TYPE_CHECKING:", + "class .*\\bProtocol\\):", + "@(abc\\.)?abstractmethod", + ] + [tool.ruff] line-length = 100 target-version = "py311" @@ -72,6 +86,8 @@ ignore = [ "D400", # First line should end with a period "D415", # First line should end with a period, question mark, or exclamation point "EM", # Exception texts - https://docs.astral.sh/ruff/rules/#flake8-errmsg-em + "FBT", # The Boolean Trap - https://docs.astral.sh/ruff/rules/#flake8-boolean-trap-fbt + "FIX002", # Allow to add TODO notes in the code "G004", # Logging statement uses f-string "ISC001", # single-line-implicit-string-concatenation "PD", # opinionated linting for pandas code diff --git a/tests/test_workflow.py b/tests/test_workflow.py index 42f0f26..4603bfb 100644 --- a/tests/test_workflow.py +++ b/tests/test_workflow.py @@ -1,4 +1,5 @@ """Plugin tests.""" + from typing import TYPE_CHECKING import pytest diff --git a/tests/utils.py b/tests/utils.py index 438fc63..1a1c381 100644 --- a/tests/utils.py +++ b/tests/utils.py @@ -1,4 +1,8 @@ -"""Testing utilities.""" +"""Testing utilities. + +Remove this and other example files after bootstrapping your project. +""" + import os from typing import ClassVar