vcf2phylip v2.8

• Deletions are now correctly represented as - instead of * in the output matrices (bug introduced in v2.7)

vcf2phylip v2.7

• Added option to write a table with the sites used for the matrices and the number of sampes on each site -w, --write-used-sites

vcf2phylip v2.6

• Added support for GVCF files from GATK
• Improved error catching for malformed lines in VCF
• Added option --output-folder to redirect output files to a specific directory
• Added option --output-prefix to rename the prefix of the output matrices

vcf2phylip v2.5

• Fix minor issue for allowing lower case characters in reference
• Minor speed optimizations in the code

vcf2phylip v2.3

• Python 3 compatibility
• Added -r, --resolve-IUPAC option

vcf2phylip v2.0

• All ploidies allowed and automatically detected
• Compressed VCF can be analyzed directly (.vcf.gz)

vcf2phylip v1.5

Release of vcf2phylip v1.5