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[8.17](backport #42183) libbeat/tests/system: bump python libs to fix issues with Python 3.13 #26504

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[8.17](backport #42183) libbeat/tests/system: bump python libs to fix issues with Python 3.13

[8.17](backport #42183) libbeat/tests/system: bump python libs to fix issues with Python 3.13 #26504

Run time

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Job Run time
lint (windows)
8m 57s
lint (linux)
9m 15s
lint (darwin)
4m 5s
22m 17s