From 08efbbc2af69c4273f61b1c21ea0141ef90e6af6 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?=C3=81lvaro=20Gonz=C3=A1lez?= Date: Fri, 22 Dec 2023 15:01:05 +0200 Subject: [PATCH] Upgrade to v3.8 --- .github/workflows/checks.yml | 2 +- Dockerfile | 2 +- docker-compose.yaml | 4 ++-- requirements.txt | 3 ++- 4 files changed, 6 insertions(+), 5 deletions(-) diff --git a/.github/workflows/checks.yml b/.github/workflows/checks.yml index 01b7762..d16499e 100644 --- a/.github/workflows/checks.yml +++ b/.github/workflows/checks.yml @@ -16,7 +16,7 @@ jobs: - name: Set up Python uses: actions/setup-python@v4 with: - python-version: "3.7" + python-version: "3.8" - name: Install requirements run: | pip install . diff --git a/Dockerfile b/Dockerfile index 05153ec..b343527 100644 --- a/Dockerfile +++ b/Dockerfile @@ -1,4 +1,4 @@ -FROM elixircloud/foca:20221110-py3.7 +FROM docker.io/elixircloud/foca:20231219-py3.11 LABEL version="1.1" LABEL software="cwl-WES" diff --git a/docker-compose.yaml b/docker-compose.yaml index 7a3699d..e52b483 100644 --- a/docker-compose.yaml +++ b/docker-compose.yaml @@ -2,7 +2,7 @@ version: '3.6' services: wes: - image: elixircloud/cwl-wes:latest + image: docker.io/elixircloud/cwl-wes:latest build: context: . dockerfile: Dockerfile @@ -16,7 +16,7 @@ services: - "8080:8080" wes-worker: - image: elixircloud/cwl-wes:latest + image: docker.io/elixircloud/cwl-wes:latest restart: unless-stopped depends_on: - wes diff --git a/requirements.txt b/requirements.txt index 396497f..48f48e3 100644 --- a/requirements.txt +++ b/requirements.txt @@ -1,5 +1,6 @@ foca~=0.12.0 -cwl-tes @ git+https://github.com/ohsu-comp-bio/cwl-tes.git@7b44cb1825a302bb7eccb3f2d91dc233adc0e32f#egg=cwl-tes +#cwl-tes @ git+https://github.com/ohsu-comp-bio/cwl-tes.git@7b44cb1825a302bb7eccb3f2d91dc233adc0e32f#egg=cwl-tes +cwl-tes==0.3.0 drs-cli~=0.2.3 gunicorn~=19.9.0 py-tes~=0.4.2