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#1145 CDX import: letter is duplicate and 'superscript' and 'subscrip…
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…t' become the same size as the letter (#1175)

Co-authored-by: Roman Porozhnetov <roman_porozhnetov@epam.com>
Co-authored-by: Bohdan <55767250+bodyangug@users.noreply.github.com>
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@Wadym @even1024 @bodyangug
3 people authored Jul 27, 2023
1 parent a2696a9 commit 8114352
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Showing 24 changed files with 67 additions and 29 deletions.
38 changes: 37 additions & 1 deletion api/tests/integration/ref/formats/cdx_to_ket.py.out
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Expand Up @@ -80,7 +80,7 @@ US06174985-20010116-C00003.CDX
{
"type": "text",
"data": {
"content": "{\"blocks\":[{\"text\":\"(CH2)16(CH2)16(CH2)16(CH2)16\",\"inlineStyleRanges\":[{\"offset\":0,\"length\":7,\"style\":\"CUSTOM_FONT_SIZE_11px\"},{\"offset\":7,\"length\":7,\"style\":\"SUBSCRIPT\"},{\"offset\":7,\"length\":7,\"style\":\"CUSTOM_FONT_SIZE_11px\"},{\"offset\":14,\"length\":7,\"style\":\"CUSTOM_FONT_SIZE_11px\"},{\"offset\":21,\"length\":7,\"style\":\"SUBSCRIPT\"},{\"offset\":21,\"length\":7,\"style\":\"CUSTOM_FONT_SIZE_11px\"}],\"entityRanges\":[],\"data\":{}}],\"entityMap\":{}}",
"content": "{\"blocks\":[{\"text\":\"(CH2)16\",\"inlineStyleRanges\":[{\"offset\":0,\"length\":3,\"style\":\"CUSTOM_FONT_SIZE_11px\"},{\"offset\":3,\"length\":1,\"style\":\"SUBSCRIPT\"},{\"offset\":3,\"length\":1,\"style\":\"CUSTOM_FONT_SIZE_11px\"},{\"offset\":4,\"length\":1,\"style\":\"CUSTOM_FONT_SIZE_11px\"},{\"offset\":5,\"length\":2,\"style\":\"SUBSCRIPT\"},{\"offset\":5,\"length\":2,\"style\":\"CUSTOM_FONT_SIZE_11px\"}],\"entityRanges\":[],\"data\":{}}],\"entityMap\":{}}",
"position": {
"x": 3.6500000953674318,
"y": -5.6041669845581059,
Expand Down Expand Up @@ -3507,3 +3507,39 @@ simple_rgrp64.cdx
]
}
}
x_sup.cdx
{
"root": {
"nodes": [
{
"type": "text",
"data": {
"content": "{\"blocks\":[{\"text\":\"X2\",\"inlineStyleRanges\":[{\"offset\":0,\"length\":1,\"style\":\"CUSTOM_FONT_SIZE_12px\"},{\"offset\":1,\"length\":1,\"style\":\"SUPERSCRIPT\"},{\"offset\":1,\"length\":1,\"style\":\"CUSTOM_FONT_SIZE_12px\"}],\"entityRanges\":[],\"data\":{}}],\"entityMap\":{}}",
"position": {
"x": 6.925000190734863,
"y": -7.525000095367432,
"z": 0.0
}
}
}
]
}
}
x_sup_sub_default_size.cdx
{
"root": {
"nodes": [
{
"type": "text",
"data": {
"content": "{\"blocks\":[{\"text\":\"X2D3C4D\",\"inlineStyleRanges\":[{\"offset\":0,\"length\":1,\"style\":\"CUSTOM_FONT_SIZE_12px\"},{\"offset\":1,\"length\":1,\"style\":\"SUPERSCRIPT\"},{\"offset\":1,\"length\":1,\"style\":\"CUSTOM_FONT_SIZE_12px\"},{\"offset\":2,\"length\":1,\"style\":\"CUSTOM_FONT_SIZE_12px\"},{\"offset\":3,\"length\":1,\"style\":\"SUBSCRIPT\"},{\"offset\":3,\"length\":1,\"style\":\"CUSTOM_FONT_SIZE_12px\"},{\"offset\":4,\"length\":1,\"style\":\"CUSTOM_FONT_SIZE_12px\"},{\"offset\":5,\"length\":1,\"style\":\"SUPERSCRIPT\"},{\"offset\":5,\"length\":1,\"style\":\"CUSTOM_FONT_SIZE_12px\"},{\"offset\":6,\"length\":1,\"style\":\"CUSTOM_FONT_SIZE_12px\"}],\"entityRanges\":[],\"data\":{}}],\"entityMap\":{}}",
"position": {
"x": 8.300000190734864,
"y": -10.050000190734864,
"z": 0.0
}
}
}
]
}
}
7 changes: 3 additions & 4 deletions api/tests/integration/ref/formats/cdxml_to_mol.py.out
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Expand Up @@ -132,14 +132,13 @@ benzene_radical.cdxml
0.0100 -0.7317 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
0.4257 -0.9717 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
0.8413 -0.7317 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
0.8413 -0.2517 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
0.8413 -0.2517 0.0000 C• 0 0 0 0 0 0 0 0 0 0 0 0
1 2 1 0 0 0 0
1 6 2 0 0 0 0
2 3 2 0 0 0 0
3 4 1 0 0 0 0
4 5 2 0 0 0 0
5 6 1 0 0 0 0
M RAD 1 6 2
M END

enhanced_stereo1.cdxml
Expand Down Expand Up @@ -849,12 +848,12 @@ test-multi.cdxml
M STY 4 1 SUP 2 SUP 3 SUP 4 SUP
M SLB 4 1 1 2 2 3 3 4 4
M SAL 1 5 1 2 3 4 5
M SMT 1 b
M SMT 1 bAla
M SDI 1 4 0.0000 0.0000 0.0000 0.0000
M SDI 1 4 0.0000 0.0000 0.0000 0.0000
M SAL 2 8 6 7 8 9 10 11 12 13
M SAL 2 6 14 15 16 17 18 19
M SMT 2 D
M SMT 2 D-Trp
M SDI 2 4 0.0000 0.0000 0.0000 0.0000
M SDI 2 4 0.0000 0.0000 0.0000 0.0000
M SAL 3 8 20 21 22 23 24 25 26 27
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2 changes: 1 addition & 1 deletion api/tests/integration/tests/formats/ref/AlcoholOxidation_Rxn1.b64cdx
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2 changes: 1 addition & 1 deletion api/tests/integration/tests/formats/ref/CarbonylReduction_Rxn1.b64cdx
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2 changes: 1 addition & 1 deletion api/tests/integration/tests/formats/ref/CarbonylReduction_Rxn2.b64cdx
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@@ -1 +1 @@
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