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Distorted structure representation when opening saved macromolecules in micro mode in MOL V2000 file #5676

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Zhirnoff opened this issue Oct 7, 2024 · 0 comments
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bug Macro-Micro Bucket: Macro-Micro View related issues Priority: High

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@Zhirnoff
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Zhirnoff commented Oct 7, 2024

Steps to Reproduce

  1. Open file in Macro mode (Flex mode) monomers-cycled.zip
  2. Switch to Micro mode
  3. Save as MOL V2000
  4. Open saved file

Actual behavior
Upon reopening the MOL V2000 file, the structure appears distorted, with bonds incorrectly placed, resulting in a non-cyclic structure (as shown in the screenshot). The original intended shape and arrangement of monomers are lost.
2024-10-07_19h16_21

Expected behavior
The saved structure should maintain its original form upon reopening, appearing as a cyclic structure similar to the screenshot.

2024-10-07_19h16_31

Desktop:

  • OS: Windows 11
  • Browser Chrome
  • Version 128.0.6613.120 (Official Build) (64-bit)

Ketcher version
[Version 2.26.0-rc.1]
Indigo version
[Version 1.25.0-rc.1]
Bug found during testing: #5400

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Labels
bug Macro-Micro Bucket: Macro-Micro View related issues Priority: High
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