remove extra scoring section #24
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| name: Website | |
| on: | |
| push: | |
| branches: [main, prod] | |
| pull_request: | |
| branches: [main, prod] | |
| release: | |
| types: [published] | |
| workflow_dispatch: | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| container: rocker/tidyverse:4.4.1 | |
| name: rendering-${{ matrix.files.fn }} | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| files: | |
| - {fn: "epiestim_vignette"} | |
| - {fn: "EpiLPS_vignette"} | |
| - {fn: "EpiNow2_vignette"} | |
| - {fn: "RtEstim_vignette"} | |
| - {fn: "eval_vignette"} | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| - name: Check cache | |
| uses: actions/cache@v3 | |
| id: cache | |
| with: | |
| key: ${{ format('vignette-{0}-{1}', matrix.files.fn, hashFiles(format('./vignettes/{0}.Rmd', matrix.files.fn))) }} | |
| path: | |
| ${{ format('vignettes/{0}.html', matrix.files.fn) }} | |
| - name: Install packages | |
| if: steps.cache.outputs.cache-hit != 'true' | |
| run: | | |
| install2.r -n4 EpiLPS EpiNow2 lemon ggtext kableExtra here | |
| installGithub.r EpiForeSITE/summrt | |
| installGithub.r mrc-ide/EpiEstim | |
| installGithub.r dajmcdon/rtestim | |
| - name: Render the file ${{ matrix.files.fn }} | |
| if: steps.cache.outputs.cache-hit != 'true' | |
| run: Rscript --vanilla -e 'rmarkdown::render("vignettes/${{ matrix.files.fn }}.Rmd", output_format = "rmarkdown::html_document")' | |
| - name: Save cache | |
| if: steps.cache.outputs.cache-hit != 'true' | |
| uses: actions/cache/save@v3 | |
| with: | |
| key: ${{ format('vignette-{0}-{1}', matrix.files.fn, hashFiles(format('./vignettes/{0}.Rmd', matrix.files.fn))) }} | |
| path: | |
| ${{ format('vignettes/{0}.html', matrix.files.fn) }} | |
| - name: Restore cache | |
| uses: actions/cache/restore@v3 | |
| if: steps.cache.outputs.cache-hit == 'true' | |
| with: | |
| key: ${{ format('vignette-{0}-{1}', matrix.files.fn, hashFiles(format('./vignettes/{0}.Rmd', matrix.files.fn))) }} | |
| path: | |
| ${{ format('vignettes/{0}.html', matrix.files.fn) }} | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: ${{ matrix.files.fn }} | |
| path: vignettes/${{ matrix.files.fn }}* | |
| collect: | |
| runs-on: ubuntu-latest | |
| needs: build | |
| steps: | |
| - uses: actions/download-artifact@v4 | |
| with: | |
| path: website/ | |
| - name: Upload artifacts | |
| uses: actions/upload-pages-artifact@v3 | |
| with: | |
| name: github-pages | |
| path: website/ | |
| deploy: | |
| # Deploy to the github-pages environment | |
| # but not on PRs | |
| if: ${{ github.event_name != 'pull_request' }} | |
| permissions: | |
| contents: write | |
| id-token: write | |
| pages: write | |
| environment: | |
| name: github-pages | |
| url: ${{ steps.deployment.outputs.page_url }} | |
| runs-on: ubuntu-latest | |
| needs: collect | |
| steps: | |
| - name: Deploy to GitHub Pages | |
| id: deployment | |
| uses: actions/deploy-pages@v4 | |
| with: | |
| artifact_name: github-pages | |
| preview: true | |