Generate map data #9

	on:
	workflow_dispatch:
	schedule:
	- cron: '23 2 * * 2'

	name: 'Generate map data'

	jobs:
	fetch-data:
	runs-on: ubuntu-latest
	env:
	GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
	steps:
	- uses: actions/checkout@v4

	- uses: r-lib/actions/setup-r@v2
	with:
	use-public-rspm: true

	- uses: r-lib/actions/setup-r-dependencies@v2
	with:
	extra-packages: \|
	local::.
	epiverse-connect/epiverse-scraper
	jsonlite

	- name: Update data
	env:
	EMBEDDINGS_LOCATION: ${{ secrets.EMBEDDINGS_LOCATION }}
	run: \|
	source("data-raw/json_map.R")
	shell: Rscript {0}

	- name: Commit latest data
	run: \|
	git config user.email "action@github.com"
	git config user.name "GitHub Actions"
	git add inst/extdata/map_data.json
	git commit -m "Fetch map data"
	git pull --rebase origin main
	git push
	echo "pushed to github"

	trigger-deploy:
	needs: fetch-data
	runs-on: ubuntu-latest
	env:
	GITHUB_TOKEN: ${{ secrets.EPIVERSE_CONNECT_PAT }}
	steps:
	- uses: actions/checkout@v4

	- name: Trigger re-deploy of the front-end
	run: \|
	gh workflow run auto-deploy-pages.yml --repo epiverse-connect/epiverse-search-frontend

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