Task: Automatically update CodeMeta upon release #1276

.github/workflows/publish.yaml

@@ -1,12 +1,12 @@
-# Single workflow to increment ersilia version in pyproject.toml,
+# Single workflow to increment Ersilia version in pyproject.toml,
 # tag and push the commit to the repository, release to GitHub, PyPI, Conda, and DockerHub
 
 name: Ersilia Release
 
 on:
   workflow_dispatch: # run manually
   schedule:
-    - cron: ' 0 3 1 * *' # run at 3:00 AM on the first day of the month
+    - cron: '0 3 1 * *' # run at 3:00 AM on the first day of the month
 
 jobs:
   version:
@@ -18,8 +18,8 @@ jobs:
       - name: Checkout persist credentials
         uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 # pin@v3.5.3
         with:
-          persist-credentials: false # otherwise, the token used is the GITHUB_TOKEN, instead of your personal token
-          fetch-depth: 0 # otherwise, you will failed to push refs to dest repo
+          persist-credentials: false # ensures use of personal token instead of GITHUB_TOKEN
+          fetch-depth: 0 # fetches all history for tagging
 
       - name: Increment package version
         id: version
@@ -33,12 +33,10 @@ jobs:
         env:
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
         run: |
-          # git config http.sslVerify false
-          # repo="https://${GITHUB_ACTOR}:${GITHUB_TOKEN}@github.com/${GITHUB_REPOSITORY}.git"
           git config --local user.email "ersilia-bot@users.noreply.github.com"
           git config --local user.name "ersilia-bot"
           git tag -a "v${{ steps.version.outputs.VERSION }}" -m "v${{ steps.version.outputs.VERSION }}"
-          # git push "${repo}" origin "v${{ steps.version.outputs.VERSION }}"
+          git push origin "v${{ steps.version.outputs.VERSION }}"
 
       - name: Update version in CITATION.cff
         id: update-citation
@@ -57,12 +55,22 @@ jobs:
               yaml.dump(citation, file, default_flow_style=False, sort_keys=False)
           "
 
-      - name: Commit and push changes done to the static version file and pyproject.toml
+      - name: Update version in codemeta.json
+        id: update-codemeta
+        env:
+          VERSION: ${{ steps.version.outputs.VERSION }}
+        run: |
+          # Ensure jq is installed
+          sudo apt-get install -y jq
+          # Update the version in codemeta.json
+          jq '.version = env.VERSION' codemeta.json > codemeta_tmp.json && mv codemeta_tmp.json codemeta.json
+
+      - name: Commit and push changes to CITATION.cff and codemeta.json
         uses: actions-js/push@5a7cbd780d82c0c937b5977586e641b2fd94acc5 # pin@v1.5
         with:
           author_name: "ersilia-bot"
           author_email: "ersilia-bot@users.noreply.github.com"
-          message: "update version [skip ci]"
+          message: "Update version in CITATION.cff and codemeta.json [skip ci]"
           repository: "ersilia-os/${{ github.event.repository.name }}"
           github_token: ${{ secrets.GITHUB_TOKEN }}
           amend: true
@@ -80,13 +88,10 @@ jobs:
       - name: Create GitHub release
         id: gh_release
         run: |
-          # Get the version file that we updated in the previous job
-          wget https://raw.githubusercontent.com/ersilia-os/ersilia/master/ersilia/_static_version.py
-        
           month=$(date +'%B')
           year=$(date +'%Y')
           title="$month $year"
-          version=`sed -n 's/.*version = "\([^"]*\)".*/\1/p' _static_version.py`
+          version=${{ needs.version.outputs.VERSION }}
           git fetch --tags
           gh release create "v$version" --title "$title" --generate-notes
 
@@ -102,7 +107,6 @@ jobs:
         uses: actions/setup-python@f677139bbe7f9c59b41e40162b753c062f5d49a3 # pin@v5.2.0
         with:
           python-version: '3.8'
-          # cache: 'pip' # caching pip dependencies
 
       - name: Python Poetry Action
         uses: abatilo/actions-poetry@v3.0.0
@@ -114,6 +118,4 @@ jobs:
         run: |
           git pull origin master 
           poetry config -- http-basic.pypi $PYPI_USERNAME $PYPI_PASSWORD
-          poetry --build publish 
-
-
+          poetry --build publish