Move the model inspection code (#1227)

* added the inspect command,modelInspector class and registered the inspect command

* added inspect to the cli commands

* changed naming convention for function names and replaced print statements with debug logs

* formatted with black

* fixed computational performance tracking error uniting the subprocess

* changing function names

* restructuring the inspect code

---------

Co-authored-by: Dhanshree Arora <DhanshreeA@users.noreply.github.com>

ersilia/cli/cmd.py

@@ -72,3 +72,7 @@ def setup(self):
     def test(self):
         m = importlib.import_module("ersilia.cli.commands.test")
         m.test_cmd()
+
+    def inspect(self):
+        m = importlib.import_module("ersilia.cli.commands.inspect")
+        m.inspect_cmd()

ersilia/cli/commands/inspect.py

@@ -0,0 +1,52 @@
+from ...publish.inspect import ModelInspector
+import click
+from . import ersilia_cli
+import json
+from ... import ErsiliaBase
+
+
+class InspectCommand(ErsiliaBase):
+    def __init__(self, config_json=None, credentials_json=None):
+        super().__init__(config_json, credentials_json)
+
+    def inspect(self, model):
+        inspector = ModelInspector(model)
+
+        check_repo_exists_result = inspector.check_repo_exists()
+        check_complete_metadata_result = inspector.check_complete_metadata()
+        check_complete_folder_structure_result = (
+            inspector.check_complete_folder_structure()
+        )
+        check_dependencies_are_valid_result = inspector.check_dependencies_are_valid()
+        check_comptuational_performance_result = (
+            inspector.check_comptuational_performance()
+        )
+        check_no_extra_files_result = inspector.check_no_extra_files()
+
+        value = {
+            "is_github_url_available": check_repo_exists_result.success,
+            "is_github_url_available_details": check_repo_exists_result.details,
+            "complete_metadata": check_complete_metadata_result.success,
+            "complete_metadata_details": check_complete_metadata_result.details,
+            "complete_folder_structure": check_complete_folder_structure_result.success,
+            "complete_folder_structure_details": check_complete_folder_structure_result.details,
+            "docker_check": check_dependencies_are_valid_result.success,
+            "docker_check_details": check_dependencies_are_valid_result.details,
+            "computational_performance_tracking": check_comptuational_performance_result.success,
+            "computational_performance_tracking_details": check_comptuational_performance_result.details,
+            "extra_files_check": check_no_extra_files_result.success,
+            "extra_files_check_details": check_no_extra_files_result.details,
+        }
+
+        self.logger.debug(json.dumps(value, indent=2))
+        return json.dumps(value)
+
+
+def inspect_cmd():
+    @ersilia_cli.command(
+        short_help="Inspect model", help="Inspect model structure and metadata"
+    )
+    @click.argument("model", type=click.STRING)
+    def inspect(model):
+        cmd = InspectCommand()
+        return cmd.inspect(model)

ersilia/cli/create_cli.py

@@ -20,6 +20,7 @@ def create_ersilia_cli():
     cmd.fetch()
     cmd.info()
     cmd.test()
+    cmd.inspect()
 
     # TODO: publishing functionalities
     if is_contributor: