Update DOI in citation file; add version update in citation to releas…

…e action

.github/workflows/publish.yaml

@@ -35,6 +35,23 @@ jobs:
           git config --local user.name "ersilia-bot"
           git tag -a "v${{ steps.version.outputs.VERSION }}" -m "v${{ steps.version.outputs.VERSION }}"
 
+      - name: Update version in CITATION.cff
+        id: update-citation
+        env:
+          VERSION: ${{ steps.version.outputs.VERSION }}
+        run: |
+          pip install PyYAML
+          python -c "
+          import os
+          import yaml
+          with open('CITATION.cff', 'r') as file:
+              content = file.read()
+          citation = yaml.safe_load(file)
+          citation['version'] = os.environ['VERSION']
+          with open('CITATION.cff', 'w') as file:
+              yaml.dump(citation, file)
+          "
+
       - name: Commit and push changes done to the static version file and pyproject.toml
         uses: actions-js/push@5a7cbd780d82c0c937b5977586e641b2fd94acc5 # pin@v1.5
         with:

CITATION.cff

@@ -12,6 +12,6 @@ authors:
   orcid: "https://orcid.org/0000-0002-9906-6936"
 title: "Ersilia Model Hub: a repository of AI/ML models for neglected tropical diseases"
 version: 1.0.0
-doi: 10.5281/zenodo.7274646
+doi: 10.5281/zenodo.7274645
 date-released: 2022-11-02
 url: "https://github.com/ersilia-os/ersilia"