TissueTMDD is a shiny that provide an interactive way to run simulations of drug-target binding in tissue interstitial space.
Using TissueTMDD, you can:
- Setup simulation parameters,
- Run simulations,
- Compare simulations,
- Export and import simulation settings
- Git Installation and GitHub setup (instructions),
- R Installation (>= 4.3.0),
- RTools Installation (for Windows users, instructions).
rClr cannot be installed from github or from CRAN directly, use the following code to do so:
install.packages("https://github.com/Open-Systems-Pharmacology/rClr/releases/download/v0.9.2/rClr_0.9.2.zip",
type = "binary")
# install.packages("remotes")
remotes::install_github("esqLABS/TissueTMDD@release")
To install the latest development version, use:
# install.packages("remotes")
remotes::install_github("esqLABS/TissueTMDD")
If the previous solution did not work, you can try the following
- Download the source code here
- Unzip it and open the
.Rproj
file with RStudio. - Run
install.packages("renv")
in the R console. - Run
renv::restore()
in the R console. - In the top menu bar, click on
Build
>Install Package
library(TissueTMDD)
run_app()
Please note that the TissueTMDD project is released with a Contributor Code of Conduct. By contributing to this project, you agree to abide by its terms.