Add testing and test coverage as github actions #7
Workflow file for this run
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| # Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | |
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
| on: | |
| push: | |
| branches: [main, master] | |
| pull_request: | |
| branches: [main, master] | |
| name: R-CMD-check | |
| jobs: | |
| R-CMD-build: | |
| runs-on: windows-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| RCLR_VERSION: 0.9.2 | |
| R_KEEP_PKG_SOURCE: yes | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Download latest PK-sim build archive | |
| run: | | |
| $url = "https://ci.appveyor.com/api/projects/open-systems-pharmacology-ci/pk-sim/artifacts/setup.zip?branch=develop" | |
| # Define the location where you want to save the zip file | |
| $outputPath = "${{ runner.workspace }}/setup.zip" | |
| Invoke-WebRequest -Uri $url -OutFile $outputPath | |
| shell: powershell | |
| - name: Unzip PK-sim build archive | |
| run: | | |
| $zipPath = "${{ runner.workspace }}/setup.zip" | |
| $unzipPath = "${{ runner.workspace }}/unzipped" | |
| Expand-Archive -Path $zipPath -DestinationPath $unzipPath | |
| shell: powershell | |
| - name: Install PK-sim MSI | |
| run: | | |
| $msiPath = Get-ChildItem -Path "${{ runner.workspace }}/unzipped" -Filter "*.msi" | Select-Object -First 1 | |
| if ($msiPath) { | |
| Start-Process msiexec -ArgumentList "/i", $msiPath.FullName, "/quiet", "/qn", "/norestart" -Wait | |
| } else { | |
| Write-Output "No MSI file found in the unzipped directory." | |
| exit 1 | |
| } | |
| shell: powershell | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| - name: Download rClr | |
| run: | | |
| RCLR_URL <- "https://github.com/Open-Systems-Pharmacology/rClr/releases/download/v${{ env.RCLR_VERSION }}/rClr_${{ env.RCLR_VERSION }}.zip" | |
| download.file(RCLR_URL, "rClr_${{ env.RCLR_VERSION }}.zip") | |
| shell: Rscript {0} | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: | | |
| rClr=local::./rClr_${{ env.RCLR_VERSION }}.zip | |
| any::rcmdcheck | |
| any::devtools | |
| local::. | |
| ospsuite.utils=github::Open-Systems-Pharmacology/OSPSuite.RUtils | |
| tlf=github::Open-Systems-Pharmacology/TLF-Library | |
| ospsuite=github::Open-Systems-Pharmacology/OSPSuite-R | |
| ospsuite.parameteridentification=github::Open-Systems-Pharmacology/OSPSuite.ParameterIdentification | |
| needs: check | |
| - name: build package | |
| run: | | |
| devtools::build(binary = TRUE, path = "built_package/") | |
| list.files("./built_package/", pattern = "esqlabsR_.*\\.zip", full.names = TRUE) | |
| shell: Rscript {0} | |
| - name: create test file | |
| run: | | |
| file.create("built_package/test.txt") | |
| shell: Rscript {0} | |
| - name: upload built package | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| path: D:/a/esqlabsR/built_package/esqlabsR_*.zip | |
| - name: upload test file | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| path: D:/a/esqlabsR/built_package/test.txt |