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Updated docker info
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annazhukova authored Dec 9, 2022
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6 changes: 3 additions & 3 deletions README.md
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Expand Up @@ -22,7 +22,7 @@ catch up with pathogen sequencing efforts.
[![GitHub release](https://img.shields.io/github/v/release/evolbioinfo/bdei.svg)](https://github.com/evolbioinfo/bdei/releases)
[![PyPI version](https://badge.fury.io/py/pybdei.svg)](https://pypi.org/project/pybdei/)
[![PyPI downloads](https://shields.io/pypi/dm/pybdei)](https://pypi.org/project/pybdei/)
[![Docker pulls](https://img.shields.io/docker/pulls/evolbioinfo/pybdei)](https://hub.docker.com/r/evolbioinfo/pybdei/tags)
[![Docker pulls](https://img.shields.io/docker/pulls/evolbioinfo/bdei)](https://hub.docker.com/r/evolbioinfo/bdei/tags)


#### Preprint
Expand Down Expand Up @@ -55,7 +55,7 @@ Once [docker](https://www.docker.com/community-edition) is installed, run the fo
(here we assume that the sampling probability value is known and fixed to 0.3):

```bash
docker run -v <path_to_the_folder_containing_the_tree>:/data:rw -t evolbioinfo/pybdei --nwk /data/<tree_file.nwk> --p 0.3 --CI_repetitions 100 --log <file_to_store_the_estimated_parameters.tab>
docker run -v <path_to_the_folder_containing_the_tree>:/data:rw -t evolbioinfo/bdei --nwk /data/<tree_file.nwk> --p 0.3 --CI_repetitions 100 --log <file_to_store_the_estimated_parameters.tab>
```

This will produce a file <file_to_store_the_estimated_parameters.tab> in the <path_to_the_folder_containing_the_tree> folder,
Expand All @@ -65,7 +65,7 @@ This will produce a file <file_to_store_the_estimated_parameters.tab> in the <pa

To see advanced options, run
```bash
docker run -t evolbioinfo/pybdei -h
docker run -t evolbioinfo/bdei -h
```

## Run with singularity
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