Merge pull request #34 from eyra/r-gh-action-fix

Fixed GH workflow for R scripts

.github/workflows/checks.yaml

@@ -39,7 +39,7 @@ jobs:
           load: true
 
       - name: Run prediction
-        run: docker run --rm -v "$(pwd)/.:/data" eyra-rank:latest /data/PreFer_fake_data.csv /data/PreFer_fake_background_data.csv --out=/data/predictions.csv
+        run: docker run --rm -v "$(pwd)/.:/data" eyra-rank:latest /data/PreFer_fake_data.csv /data/PreFer_fake_background_data.csv --output /data/predictions.csv
 
       - name: Build Docker scoring image
         uses: docker/build-push-action@v4
@@ -50,4 +50,4 @@ jobs:
           load: true
 
       - name: Run scoring
-        run: docker run --rm -v "$(pwd):/data" --entrypoint conda eyra-rank:scoring run -n eyra-rank python /app/score.py /data/predictions.csv /data/PreFer_fake_data.csv
+        run: docker run --rm -v "$(pwd):/data" --entrypoint conda eyra-rank:scoring run -n eyra-rank python /app/score.py /data/predictions.csv /data/PreFer_fake_outcome.csv

PreFer_fake_outcome.csv

@@ -0,0 +1,31 @@
+nomem_encr,new_child
+700001,1
+700002,0
+700003,0
+700004,0
+700005,0
+700006,0
+700007,0
+700008,0
+700009,0
+700010,1
+700011,0
+700012,0
+700013,0
+700014,0
+700015,1
+700016,0
+700017,0
+700018,1
+700019,0
+700020,1
+700021,1
+700022,0
+700023,1
+700024,0
+700025,0
+700026,0
+700027,0
+700028,0
+700029,0
+700030,0

r.Dockerfile

@@ -1,11 +1,11 @@
 FROM r-base:4.3.3
 
+RUN mkdir /app
+WORKDIR /app
 
-COPY data /data
-COPY *.R /
-COPY *.rds /
+COPY *.R /app
+COPY *.rds /app
 
 RUN Rscript packages.R
 
-ENTRYPOINT ["Rscript", "run.R"]
-CMD ["predict", "/data/fake_data.csv"]
+ENTRYPOINT ["Rscript", "run.R"]