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Fixed GH workflow for R scripts
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vloothuis committed Mar 27, 2024
1 parent 18e846c commit afa4ee9
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4 changes: 2 additions & 2 deletions .github/workflows/checks.yaml
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Expand Up @@ -39,7 +39,7 @@ jobs:
load: true

- name: Run prediction
run: docker run --rm -v "$(pwd)/.:/data" eyra-rank:latest /data/PreFer_fake_data.csv /data/PreFer_fake_background_data.csv --out=/data/predictions.csv
run: docker run --rm -v "$(pwd)/.:/data" eyra-rank:latest /data/PreFer_fake_data.csv /data/PreFer_fake_background_data.csv --output /data/predictions.csv

- name: Build Docker scoring image
uses: docker/build-push-action@v4
Expand All @@ -50,4 +50,4 @@ jobs:
load: true

- name: Run scoring
run: docker run --rm -v "$(pwd):/data" --entrypoint conda eyra-rank:scoring run -n eyra-rank python /app/score.py /data/predictions.csv /data/PreFer_fake_data.csv
run: docker run --rm -v "$(pwd):/data" --entrypoint conda eyra-rank:scoring run -n eyra-rank python /app/score.py /data/predictions.csv /data/PreFer_fake_outcome.csv
31 changes: 31 additions & 0 deletions PreFer_fake_outcome.csv
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nomem_encr,new_child
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700018,1
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10 changes: 5 additions & 5 deletions r.Dockerfile
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@@ -1,11 +1,11 @@
FROM r-base:4.3.3

RUN mkdir /app
WORKDIR /app

COPY data /data
COPY *.R /
COPY *.rds /
COPY *.R /app
COPY *.rds /app

RUN Rscript packages.R

ENTRYPOINT ["Rscript", "run.R"]
CMD ["predict", "/data/fake_data.csv"]
ENTRYPOINT ["Rscript", "run.R"]

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