-
Notifications
You must be signed in to change notification settings - Fork 4
minutes_2019_05_09
Michael van Vliet edited this page May 20, 2019
·
6 revisions
Purva Kulkarni (minutes, thank you!), Peter-Bram 't Hoen (chair), Lennart Johansson, Joeri vd Velde, Morris Swertz, Leon Mei, Katy Wolstencroft, Jasmin Boehmer, Hanneke van Deutekom, Andrew Stubbs, Saskia Hiltemann, Jan Windmeijer + colleague, Koen ten Hove, Wynand Alkema, Michael van Vliet, Alida Kindt, Mateusz Kuzak, Armel Lefebvre, Gurnoor Singh
- Introduction of the objectives of the call and the tasks
- Introduction of the participants
- The inventory of tools for –omics data FAIRification: https://github.com/fairgenomes/information/wiki/Stream2
- Relation to the requirements of the FAIRgenomes, X-omics, UMD projects. See also: https://docs.google.com/spreadsheets/d/1rnLsmE62t15jCwJfx4mCL5USYSeiXNctCA0XPcgprds/edit#gid=0
- Next steps a. BYOD workshops for data FAIRification b. Communication internal and external (link to international initiatives such as GA4GH, 1MG, Phenomenal
- Any other business
- First we will focus on genomics data/experiments before moving to fit in metabolomics-related (or other -omics related) information
- The initial focus will be on samples/experimental conditions/assays
- The FAIRgenomes repository may not be the best place for non-genomics data FAIRification: Suggestion by Morris - Add things to wiki and later repositories can be renamed as and when needed
- Suggestion by Andrew - Check PhenoMeNal (http://phenomenal-h2020.eu/home/) and take a look at the existing use-cases within it
- Suggestion by Peter-Bram - To work first on sample metadata and sample data
- Suggestion by Michael - Take public datasets and check if the ontologies/ data models fit on them. This can be compared at a workshop
- Another TC needed before the workshop (where ontologies and data models will be comapred)
- Each member brings a sample sheet relevant to individual projects/ research to see how comparable they are
- Katy will share a list of items that deal with GDPR and laws relating to FAIR data and will add links to the wiki/ google-doc for VWData project
- GA4GH discussion in the next TC before the workshop
- Mateusz would need input from everyone on this
- Plan to have five workhops:
- Metadata template for samples
- Specific workshops for the three -omics levels (genomics, proteomics and metabolomics, order flexible)
- Data integration
- Starting point for the samples workshop can be the sample sheet plus attempts to ontology-based models for these sample sheet. For the three -omics workshops, it could be an output file from an -omics experiment, such as a vcf file for genomics (see also the documents from the 2017 BYOD in Utrecht). The aim would be to make this FAIR
- Decision: in preparation of the first workshop, all choose a relevant sample sheet from their customer / project
- Decision: Mateusz will work with Peter-Bram on the further agenda and aims of the first workshop.
- Michael - When is data FAIR and how far to go? What our efforts should be in this direction? Answer: for each project, we should define the level of ambition when it comes to FAIRification. The FAIRmetrics can be leading plus other output from projects such as FAIRsFAIR.
- Posting use case related questions on Wiki?
- Effective use of Git repository
- Consent issue - Katy's project that is a part of the Dutch National Research Agenda
- Everyone should keep an eye on the progress in different projects on data FAIRification running within Europe and outside
- Workshop preparation - Everyone to collect an example sample sheet, see which mapping can be done yourself and data models that can be built on it. Mateusz and Peter-Bram define agenda and plan a TC in preparation of the workshop
- Build multiple concrete usecases that depict what we mean by FAIR
- Katy to explore the links with VWData project.