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1. splatlab/mantis splatlab/mantis Public

   Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index

   C++ 80 20

2. COMBINE-lab/pufferfish COMBINE-lab/pufferfish Public

   An efficient index for the colored, compacted, de Bruijn graph

   C 108 19

3. COMBINE-lab/rainbowfish COMBINE-lab/rainbowfish Public

   A succinct colored dBG representation

   C++ 12

4. RapClust_OrphanReads RapClust_OrphanReads Public

   Extended version of rapclust that also counts on orphan reads in clustering the contigs.

   Python

5. herRingShiny herRingShiny Public

   Shiny codes for herring statistics and simulation results visualization

   R

6. quickNBs quickNBs Public

   Quick Ipython notebooks that are used to calculate some basic stats for different tools

   Jupyter Notebook