DESCRIPTION

Package: NewWave
Type: Package
Title: Negative binomial model for scRNA-seq
Version: 1.1.2
Authors@R: c(person("Federico", "Agostinis", role = c("aut", "cre"),
                    email = "federico.agostinis@outlook.com"),
             person("Chiara", "Romualdi", role = "aut"),
             person("Gabriele", "Sales", role = "aut"),
             person("Davide", "Risso", role = "aut"))
Description: A model designed for dimensionality reduction and batch effect
    removal for scRNA-seq data. It is designed to be massively parallelizable 
    using shared objects that prevent memory duplication, and it can be used
    with different mini-batch approaches in order to reduce time consumption.
    It assumes a negative binomial distribution for the data with a dispersion
    parameter that can be both commonwise across gene both genewise. 
Depends: 
    R (>= 4.0),
    SummarizedExperiment
Imports:
    methods,
    SingleCellExperiment,
    parallel,
    irlba,
    Matrix,
    DelayedArray,
    BiocSingular,
    SharedObject,
    stats
Suggests:
    testthat,
    rmarkdown,
    splatter,
    mclust,
    Rtsne,
    ggplot2,
    Rcpp,
    BiocStyle,
    knitr
License: GPL-3
VignetteBuilder: knitr
biocViews: Software,
    GeneExpression,
    Transcriptomics,
    SingleCell,
    BatchEffect,
    Sequencing,
    Coverage,
    Regression
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.1
BugReports:https://github.com/fedeago/NewWave/issues