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ForGen

Forest Genomics & Molecular Genetics Lab

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  1. miRPursuit miRPursuit Public

    Analysis workflow for smallRNA sequenced data

    Shell 4 1

  2. PHENO-old PHENO-old Public

    nodeJS implementation of Plant Breading API

    JavaScript 3 2

  3. ontobrapi-web ontobrapi-web Public

    Docker file for the webserver running on Node JS

    JavaScript 2

  4. sRNA-Portal-workflow sRNA-Portal-workflow Public

    The plant sRNA portal is an online resource integrating a workflow for identifying, predicting and annotating plant small RNAs (sRNA), and a database to store sRNA datasets with standardized metada…

    JavaScript 1 1

  5. gff2graph gff2graph Public

    Transform a sorted .gff (genome feature file) into a graph with genes connected to their neighbor upstream gene

    Python 1

  6. mergeTables mergeTables Public

    Simple program to merges tables with a common column.

    Python

Repositories

Showing 10 of 12 repositories
  • PHENO Public

    BrAPI endpoint running virtuoso to serve SparQL queries

    forestbiotech-lab/PHENO’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Dec 3, 2024
  • ontobrapi-admin Public

    Administer call structures

    forestbiotech-lab/ontobrapi-admin’s past year of commit activity
    JavaScript 0 0 2 0 Updated Dec 3, 2024
  • ontobrapi-web Public

    Docker file for the webserver running on Node JS

    forestbiotech-lab/ontobrapi-web’s past year of commit activity
    JavaScript 2 GPL-3.0 0 4 3 Updated Dec 3, 2024
  • RDF_Adapter Public

    An adapter for Biocypher that imports MIAPPE data in RDF

    forestbiotech-lab/RDF_Adapter’s past year of commit activity
    Python 0 0 0 0 Updated Nov 18, 2024
  • ontobrapi-brapi Public

    Portion of the ontobrapi module responsible for exporting data as BrAPI Calls

    forestbiotech-lab/ontobrapi-brapi’s past year of commit activity
    JavaScript 0 0 1 0 Updated Nov 12, 2024
  • miRPursuit Public

    Analysis workflow for smallRNA sequenced data

    forestbiotech-lab/miRPursuit’s past year of commit activity
    Shell 4 GPL-3.0 1 6 0 Updated May 29, 2023
  • sRNA-Portal-workflow Public

    The plant sRNA portal is an online resource integrating a workflow for identifying, predicting and annotating plant small RNAs (sRNA), and a database to store sRNA datasets with standardized metadata. The workflow (miRPursuit) is based on publicly available tools and allows the automated sequential application of data processing modules for anal…

    forestbiotech-lab/sRNA-Portal-workflow’s past year of commit activity
    JavaScript 1 GPL-3.0 1 35 11 Updated May 18, 2023
  • PHENO-old Public

    nodeJS implementation of Plant Breading API

    forestbiotech-lab/PHENO-old’s past year of commit activity
    JavaScript 3 GPL-3.0 2 23 (2 issues need help) 16 Updated Dec 22, 2022
  • beacon Public

    Beacon like server to receive pings and communicate the status of other machines.

    forestbiotech-lab/beacon’s past year of commit activity
    JavaScript 0 0 0 0 Updated Apr 27, 2022
  • forgen-services Public

    A services deployment server

    forestbiotech-lab/forgen-services’s past year of commit activity
    JavaScript 0 Apache-2.0 0 0 0 Updated Sep 21, 2020
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