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To complete installation of dev version of BMTME from GitHub, you have to install Rtools Software and a few packages first.
install.packages('devtools')
devtools::install_github('frahik/BMTME')The package include 6 sample datasets
| Name | Lines | Environment | Traits | Total of observations | ME models | MTME models |
|---|---|---|---|---|---|---|
| MaizeToy | 30 | 3 | 3 | 270 | * | * |
| WheatIranian | 30 | 2 | 2 | 120 | * | * |
| WheatJapa30 | 30 | 1 | 6 | 180 | * | |
| WheatJapa50 | 50 | 1 | 3 | 150 | * | |
| WheatMadaToy | 50 | 1 | 6 | 300 | * | |
| WheatToy | 30 | 3 | 2 | 180 | * | * |
To load one dataset, use the function data(datasetName)
First option, by the article paper
@article {Montesinos-L{\'o}pez1355,
author = {Montesinos-L{\'o}pez, Osval A. and Montesinos-L{\'o}pez, Abelardo and Luna-V{\'a}zquez, Francisco Javier and Toledo, Fernando H. and P{\'e}rez-Rodr{\'\i}guez, Paulino and Lillemo, Morten and Crossa, Jos{\'e}},
title = {An R Package for Bayesian Analysis of Multi-environment and Multi-trait Multi-environment Data for Genome-Based Prediction},
volume = {9},
number = {5},
pages = {1355--1369},
year = {2019},
doi = {10.1534/g3.119.400126},
publisher = {G3: Genes, Genomes, Genetics},
URL = {https://www.g3journal.org/content/9/5/1355},
eprint = {https://www.g3journal.org/content/9/5/1355.full.pdf},
journal = {G3: Genes, Genomes, Genetics}
}
Second option, by the manual package
citation('BMTME')##
## To cite package 'BMTME' in publications use:
##
## Francisco Javier Luna-Vazquez, Fernando H. Toledo, Osval Antonio
## Montesinos-Lopez, Abelardo Montesinos-Lopez and Jose Crossa (2020).
## BMTME: Bayesian Multi-Trait Multi-Environment for Genomic Selection
## Analysis. R package version 1.0.19. https://github.com/frahik/BMTME
##
## A BibTeX entry for LaTeX users is
##
## @Manual{,
## title = {BMTME: Bayesian Multi-Trait Multi-Environment for Genomic Selection Analysis},
## author = {Francisco Javier Luna-Vazquez and Fernando H. Toledo and Osval Antonio Montesinos-Lopez and Abelardo Montesinos-Lopez and Jose Crossa},
## year = {2020},
## note = {R package version 1.0.19},
## url = {https://github.com/frahik/BMTME},
## }
If you have any suggestions or feedback, I would love to hear about it. Feel free to report new issues in this link, also if you want to request a feature/report a bug, or make a pull request if you can contribute.
- An R Package for Bayesian Analysis of Multi-environment and Multi-trait Multi-environment Data for Genome-Gased Prediction
- A Bayesian Multiple-Trait and Multiple-Environment Model Using the Matrix Normal Distribution
- Francisco Javier Luna-Vázquez (Author, Maintainer)
- Osval Antonio Montesinos-López (Author)
- Abelardo Montesinos-López (Author)
- José Crossa (Author)
- Fernando Tolero (Author)