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Annocript 1.0
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@frankMusacchia frankMusacchia released this 22 Apr 15:44
· 1 commit to master since this release
1.0
d90c108

We release the version 1.0 of Annocript after about 2 months of usage. Several modifies are coming from personal running and hints received from the google group.

Main modifies

  • Corrected an error that obstructed the database schema import when a remote host is used
  • Removed the customized database of ribosomal ncRNAs. Now two databases from SILVA are concatenated and used:
    ftp://ftp.arb-silva.de/current/Exports/SILVA_119_LSUParc_tax_silva.fasta.gz
    ftp://ftp.arb-silva.de/current/Exports/SILVA_119_SSUParc_tax_silva.fasta.gz
  • Added a check on the Fasta file given in input. These conditions must be respected or the program will stop: 1. the transcript name immediately after '>'; 2. each row must have a maximum of 80 characters; 3. only IUPAC characters are allowed.
  • Added the code to use blast separately for SwissProt and TrEMBL/UniRef
  • Removed the usage of ColorBrewer which were causing a problem on some machines. Inserted a simpler color schema for plots.
  • Corrected an error which were causing Annocript to not use the output of Portrait if this latter stops stochastically.
  • Added the possibility to display piechart in alternative to barplots in the HTML output.
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