zenodo_version

This is the zenodo version for publication

Version 0.7.0

This is a release since the paper's original resubmission, in the past year, we added a ton of new features, main changes are briefly summarized below:

1. differential gene analysis, differential splicing analysis, gene enrichment analysis
2. hla coverage analysis, for each pHLA, what percentage of the population it can cover (benefit)
3. enhanced and more flexible control database, adding two normal cohorts by default, and allowing user to add customized
4. improved algorithms for MLE tumor specificity score, and external BayesTS score (https://github.com/frankligy/BayesTS)
5. improved output for both T and B antigens
6. fix multiple bugs

Version 0.6.0

Adding New functionalities:

1. report B and T antigen in a more readable format

2.allow users to add all info to the frequency table at once

3. add long_read mode for B antigen when inferring full-length isoform and update the B viewer codebase as well

version 0.5.2

Fixed multiple bugs:

1. scratch folder cleaning issue and multiprocessing conflist issues resolved

2. tumor_specificity issue resolved

3. fix docstring displacement

4. In test folder, contain a complete testing case.

Version 0.5.1

Fixed two bugs:

1. Weckzueg can not be version 2.1.1, force it to be 2.0.2
2. expose add_coord_frequency_table to snaf namespace

Version 0.0.5

First release (alpha version)