Version 0.7.0
This is a release since the paper's original resubmission, in the past year, we added a ton of new features, main changes are briefly summarized below:
- differential gene analysis, differential splicing analysis, gene enrichment analysis
- hla coverage analysis, for each pHLA, what percentage of the population it can cover (benefit)
- enhanced and more flexible control database, adding two normal cohorts by default, and allowing user to add customized
- improved algorithms for MLE tumor specificity score, and external BayesTS score (https://github.com/frankligy/BayesTS)
- improved output for both T and B antigens
- fix multiple bugs