some scripts to analyze Blast results from FEELnc prediction
###lnc_01_parseBlastResults.pl
Desc: filter XML blast output (blastn, blastp, whatever) and return a tab delimited file with usefull informations (query and hit coeverage, name, length, e-value, %id).
Options:
verbose : -v, verbose mode (optional)
input : -i [file], XML blast output
expect : -e [nb], add expect threshold (optional, default 10-5)
coverage : -c [nb], query coverage threshold value (in %, optional, default: 70%)
###lnc_02_analyzeBlastResults.pl
Desc: Using filtered results from lnc_01_parseBlastResult, analyze TBLASTX results of predicted new GGA mRNA of FEELlnc vs HSA mRNA.
Options:
verbose : -v, verbose mode (optional)
blast : -b [file], filtered XML blast output