From 657bcf88a12b13dcabb14099c25abbde8f156e32 Mon Sep 17 00:00:00 2001 From: Felix Zimmermann Date: Thu, 3 Jun 2021 19:26:17 -0700 Subject: [PATCH] singularity: mkl_umath --- Singularity.py38 | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) diff --git a/Singularity.py38 b/Singularity.py38 index bc1c20a..8ae009d 100644 --- a/Singularity.py38 +++ b/Singularity.py38 @@ -144,9 +144,10 @@ echo using python $PYVERSION echo "installing conda extensions" conda activate conda install -q -y "python==${PYVERSION}" -conda install -q -y -c conda-forge mamba conda "zstd<1.5" +conda install -q -y -c "pkgs/main" -c anaconda -c conda-forge mamba conda "zstd<1.5" mamba install -q -y simplejson colorama protobuf requests "numexpr>=2.7.2" "numpy>=1.17" hdf5 scipy "jedi=0.17" numba "mkl>=2020" cython "jupyterlab<3" jupyter scikit-image appdirs mako scikit-learn seaborn pandas line_profiler black ninja colorama memory_profiler isort "mkl-include>=2020" fastrlock six setuptools cmake sympy pytest scikit-learn-intelex "python==${PYVERSION}" -mamba install -y -c "pkgs/main" -c anaconda -c conda-forge -c plotly gpustat colorful "h5py>3,<3.2" lmfit ipympl pathos "nodejs>=14" ptvsd xeus-python pytools nbdime "pip>=20.1" jupyter-dash ipyvolume "jupyter-server-proxy<3" six openssl "jedi<0.18" ffmpeg pytest-flake8 "python==${PYVERSION}" +mamba install -q -y -c "pkgs/main" -c anaconda -c conda-forge -c plotly gpustat colorful "h5py>3,<3.2" lmfit ipympl pathos "nodejs>=14" ptvsd xeus-python pytools nbdime "pip>=20.1" jupyter-dash ipyvolume "jupyter-server-proxy<3" six openssl "jedi<0.18" ffmpeg pytest-flake8 "python==${PYVERSION}" +mamba install -q -y -c -c "pkgs/main" -c anaconda -c intel "python==${PYVERSION}" dpcpp_cpp_rt conda clean -a -y & @@ -216,6 +217,7 @@ EOF3 echo 'installing pnumpy from pip' && pip install pnumpy echo "installing pycuda from pip" && CFLAGS=-std=c++11 CXXFLAGS=-std=c++11 LIBRARY_PATH=/usr/local/cuda/lib64/stubs CPATH=/usr/local/cuda/include CUDA_ROOT=/usr/local/cuda pip install pycuda echo 'installing cupy from pip' && pip install cupy-cuda102 & +echo 'installing mkl_umath from pip' && pip install mkl_umath & #conda config conda config --file /opt/anaconda3/.condarc --set changeps1 False