{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":65924114,"defaultBranch":"dev","name":"galaxy","ownerLogin":"galaxybot","currentUserCanPush":false,"isFork":true,"isEmpty":false,"createdAt":"2016-08-17T16:32:14.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/14315658?v=4","public":true,"private":false,"isOrgOwned":false},"refInfo":{"name":"","listCacheKey":"v0:1636773529.192806","currentOid":""},"activityList":{"items":[{"before":"31130f18c15b3ee062275bd37b7678636baeb4ea","after":"e768bf5162af56bb3e542fd86863fb3b52938a4e","ref":"refs/heads/dev_auto_update_dependencies","pushedAt":"2024-09-22T15:46:09.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"nsoranzo","name":"Nicola Soranzo","path":"/nsoranzo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4924623?s=80&v=4"},"commit":{"message":"Update Python dependencies\n\nby running `make update-dependencies`.","shortMessageHtmlLink":"Update Python 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update-dependencies`.","shortMessageHtmlLink":"Update Python dependencies"}},{"before":"cb950f54332bcb8bdc1806805fdae7a1c2a199ea","after":"3860d72b5b6f5d71bd338957e83e98ab8d383caa","ref":"refs/heads/dev_auto_update_dependencies","pushedAt":"2024-09-14T03:20:09.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"galaxybot","name":null,"path":"/galaxybot","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/14315658?s=80&v=4"},"commit":{"message":"Update Python dependencies\n\nby running `make update-dependencies`.","shortMessageHtmlLink":"Update Python dependencies"}},{"before":"198f52c0474101249f4047a9d1a85fdd334be8f4","after":"cb950f54332bcb8bdc1806805fdae7a1c2a199ea","ref":"refs/heads/dev_auto_update_dependencies","pushedAt":"2024-09-11T18:36:55.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"nsoranzo","name":"Nicola Soranzo","path":"/nsoranzo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4924623?s=80&v=4"},"commit":{"message":"Fix signature override of `Tool.exec_after_process()` method\n\nFix the following mypy 1.11 error:\n\n```\nlib/galaxy/tools/__init__.py:3212: error: Signature of \"exec_after_process\"\nincompatible with supertype \"Tool\"  [override]\n        def exec_after_process(self, app, inp_data, out_data, param_dict, ...\n        ^\nlib/galaxy/tools/__init__.py:3212: note:      Superclass:\nlib/galaxy/tools/__init__.py:3212: note:          def exec_after_process(self, app: Any, inp_data: Any, out_data: Any, param_dict: Any, job: Any = ..., **kwds: Any) -> Any\nlib/galaxy/tools/__init__.py:3212: note:      Subclass:\nlib/galaxy/tools/__init__.py:3212: note:          def exec_after_process(self, app: Any, inp_data: Any, out_data: Any, param_dict: Any, job: Any, final_job_state: Any = ..., **kwds: Any) -> Any\n```\n\nAlso:\n- Add some type annotions\n- Small refactorings","shortMessageHtmlLink":"Fix signature override of <code>Tool.exec_after_process()</code> method"}},{"before":"1a9f7d671539557a42f5a134f7276f8eaa93c47f","after":"198f52c0474101249f4047a9d1a85fdd334be8f4","ref":"refs/heads/dev_auto_update_dependencies","pushedAt":"2024-09-11T16:53:40.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"nsoranzo","name":"Nicola Soranzo","path":"/nsoranzo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4924623?s=80&v=4"},"commit":{"message":"Fix signature override of `Tool.exec_after_process()` method\n\nFix the following mypy 1.11 error:\n\n```\nlib/galaxy/tools/__init__.py:3212: error: Signature of \"exec_after_process\"\nincompatible with supertype \"Tool\"  [override]\n        def exec_after_process(self, app, inp_data, out_data, param_dict, ...\n        ^\nlib/galaxy/tools/__init__.py:3212: note:      Superclass:\nlib/galaxy/tools/__init__.py:3212: note:          def exec_after_process(self, app: Any, inp_data: Any, out_data: Any, param_dict: Any, job: Any = ..., **kwds: Any) -> Any\nlib/galaxy/tools/__init__.py:3212: note:      Subclass:\nlib/galaxy/tools/__init__.py:3212: note:          def exec_after_process(self, app: Any, inp_data: Any, out_data: Any, param_dict: Any, job: Any, final_job_state: Any = ..., **kwds: Any) -> Any\n```\n\nAlso:\n- Add some type annotions\n- Small refactorings","shortMessageHtmlLink":"Fix signature override of <code>Tool.exec_after_process()</code> method"}},{"before":"7821a6002b5d4a80435e332d3ebd985ce6215de8","after":"1a9f7d671539557a42f5a134f7276f8eaa93c47f","ref":"refs/heads/dev_auto_update_dependencies","pushedAt":"2024-09-10T13:25:13.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"nsoranzo","name":"Nicola Soranzo","path":"/nsoranzo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4924623?s=80&v=4"},"commit":{"message":"Fix signature override of `WorkflowModule.save_to_step()` method\n\nFix the following mypy 1.11 errors:\n\n```\nlib/galaxy/workflow/modules.py:650: error: Signature of \"save_to_step\"\nincompatible with supertype \"WorkflowModule\"  [override]\n        def save_to_step(self, step, **kwd):\n        ^\nlib/galaxy/workflow/modules.py:650: note:      Superclass:\nlib/galaxy/workflow/modules.py:650: note:          def save_to_step(self, step: Any, detached: Any = ...) -> Any\nlib/galaxy/workflow/modules.py:650: note:      Subclass:\nlib/galaxy/workflow/modules.py:650: note:          def save_to_step(self, step: Any, **kwd: Any) -> Any\nlib/galaxy/workflow/modules.py:1030: error: Signature of \"save_to_step\"\nincompatible with supertype \"WorkflowModule\"  [override]\n        def save_to_step(self, step, **kwd):\n        ^\nlib/galaxy/workflow/modules.py:1030: note:      Superclass:\nlib/galaxy/workflow/modules.py:1030: note:          def save_to_step(self, step: Any, detached: Any = ...) -> Any\nlib/galaxy/workflow/modules.py:1030: note:      Subclass:\nlib/galaxy/workflow/modules.py:1030: note:          def save_to_step(self, step: Any, **kwd: Any) -> Any\nlib/galaxy/workflow/modules.py:1680: error: Signature of \"save_to_step\"\nincompatible with supertype \"WorkflowModule\"  [override]\n        def save_to_step(self, step, **kwd):\n        ^\nlib/galaxy/workflow/modules.py:1680: note:      Superclass:\nlib/galaxy/workflow/modules.py:1680: note:          def save_to_step(self, step: Any, detached: Any = ...) -> Any\nlib/galaxy/workflow/modules.py:1680: note:      Subclass:\nlib/galaxy/workflow/modules.py:1680: note:          def save_to_step(self, step: Any, **kwd: Any) -> Any\n```","shortMessageHtmlLink":"Fix signature override of <code>WorkflowModule.save_to_step()</code> method"}},{"before":"20400fb8236c017461dac6698ac7b0df518cfbad","after":"7821a6002b5d4a80435e332d3ebd985ce6215de8","ref":"refs/heads/dev_auto_update_dependencies","pushedAt":"2024-09-10T12:27:44.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"nsoranzo","name":"Nicola Soranzo","path":"/nsoranzo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4924623?s=80&v=4"},"commit":{"message":"Fix signature override of `DatabaseOperationTool.produce_outputs()` method\n\nFix the following mypy 1.11 errors:\n\n```\nlib/galaxy/tools/__init__.py:3989: error: Signature of \"produce_outputs\"\nincompatible with supertype \"DatabaseOperationTool\"  [override]\n        def produce_outputs(self, trans, out_data, output_collections, inc...\n        ^\nlib/galaxy/tools/__init__.py:3989: note:      Superclass:\nlib/galaxy/tools/__init__.py:3989: note:          def produce_outputs(self, trans: Any, out_data: Any, output_collections: Any, incoming: Any, history: Any, **kwds: Any) -> Any\nlib/galaxy/tools/__init__.py:3989: note:      Subclass:\nlib/galaxy/tools/__init__.py:3989: note:          def produce_outputs(self, trans: Any, out_data: Any, output_collections: Any, incoming: Any, history: Any, tag_handler: Any, **kwds: Any) -> Any\nlib/galaxy/tools/__init__.py:4026: error: Signature of \"produce_outputs\"\nincompatible with supertype \"DatabaseOperationTool\"  [override]\n        def produce_outputs(self, trans, out_data, output_collections, inc...\n        ^\nlib/galaxy/tools/__init__.py:4026: note:      Superclass:\nlib/galaxy/tools/__init__.py:4026: note:          def produce_outputs(self, trans: Any, out_data: Any, output_collections: Any, incoming: Any, history: Any, **kwds: Any) -> Any\nlib/galaxy/tools/__init__.py:4026: note:      Subclass:\nlib/galaxy/tools/__init__.py:4026: note:          def produce_outputs(self, trans: Any, out_data: Any, output_collections: Any, incoming: Any, history: Any, tag_handler: Any, **kwds: Any) -> Any\n```","shortMessageHtmlLink":"Fix signature override of <code>DatabaseOperationTool.produce_outputs()</code> m…"}},{"before":"0ead5e5cf3b8a0f9c268fbaf6db64c7e38456dd5","after":"20400fb8236c017461dac6698ac7b0df518cfbad","ref":"refs/heads/dev_auto_update_dependencies","pushedAt":"2024-09-07T23:47:45.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"nsoranzo","name":"Nicola Soranzo","path":"/nsoranzo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4924623?s=80&v=4"},"commit":{"message":"Update Python dependencies\n\nby running `make update-dependencies`.","shortMessageHtmlLink":"Update Python dependencies"}},{"before":"b9a65f2718bee2fddb06b0f8f5518ab73ced557a","after":"0ead5e5cf3b8a0f9c268fbaf6db64c7e38456dd5","ref":"refs/heads/dev_auto_update_dependencies","pushedAt":"2024-09-07T17:04:35.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"nsoranzo","name":"Nicola Soranzo","path":"/nsoranzo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4924623?s=80&v=4"},"commit":{"message":"Fix TypeError from Pydantic 2.9.0\n\nFix the following traceback:\n```\nTraceback (most recent call last):\n  File \"scripts/dump_openapi_schema.py\", line 50, in <module>\n    write_open_api_schema()\n  File \"/home/runner/work/galaxy/galaxy/galaxy root/.venv/lib/python3.8/site-packages/click/core.py\", line 1157, in __call__\n    return self.main(*args, **kwargs)\n  File \"/home/runner/work/galaxy/galaxy/galaxy root/.venv/lib/python3.8/site-packages/click/core.py\", line 1078, in main\n    rv = self.invoke(ctx)\n  File \"/home/runner/work/galaxy/galaxy/galaxy root/.venv/lib/python3.8/site-packages/click/core.py\", line 1434, in invoke\n    return ctx.invoke(self.callback, **ctx.params)\n  File \"/home/runner/work/galaxy/galaxy/galaxy root/.venv/lib/python3.8/site-packages/click/core.py\", line 783, in invoke\n    return __callback(*args, **kwargs)\n  File \"scripts/dump_openapi_schema.py\", line 37, in write_open_api_schema\n    openapi_schema = get_openapi_schema()\n  File \"/home/runner/work/galaxy/galaxy/galaxy root/lib/galaxy/webapps/galaxy/fast_app.py\", line 166, in get_openapi_schema\n    include_all_package_routers(app, \"galaxy.webapps.galaxy.api\")\n  File \"/home/runner/work/galaxy/galaxy/galaxy root/lib/galaxy/webapps/base/api.py\", line 250, in include_all_package_routers\n    for _, module in walk_controller_modules(package_name):\n  File \"/home/runner/work/galaxy/galaxy/galaxy root/lib/galaxy/web/framework/base.py\", line 617, in walk_controller_modules\n    module = import_module(module_name)\n  File \"/opt/hostedtoolcache/Python/3.8.18/x64/lib/python3.8/importlib/__init__.py\", line 127, in import_module\n    return _bootstrap._gcd_import(name[level:], package, level)\n  File \"<frozen importlib._bootstrap>\", line 1014, in _gcd_import\n  File \"<frozen importlib._bootstrap>\", line 991, in _find_and_load\n  File \"<frozen importlib._bootstrap>\", line 975, in _find_and_load_unlocked\n  File \"<frozen importlib._bootstrap>\", line 671, in _load_unlocked\n  File \"<frozen importlib._bootstrap_external>\", line 843, in exec_module\n  File \"<frozen importlib._bootstrap>\", line 219, in _call_with_frames_removed\n  File \"/home/runner/work/galaxy/galaxy/galaxy root/lib/galaxy/webapps/galaxy/api/workflows.py\", line 79, in <module>\n    from galaxy.schema.workflows import (\n  File \"/home/runner/work/galaxy/galaxy/galaxy root/lib/galaxy/schema/workflows.py\", line 179, in <module>\n    class StoredWorkflowDetailed(StoredWorkflowSummary):\n  File \"/home/runner/work/galaxy/galaxy/galaxy root/.venv/lib/python3.8/site-packages/pydantic/_internal/_model_construction.py\", line 223, in __new__\n    complete_model_class(\n  File \"/home/runner/work/galaxy/galaxy/galaxy root/.venv/lib/python3.8/site-packages/pydantic/_internal/_model_construction.py\", line 568, in complete_model_class\n    schema = cls.__get_pydantic_core_schema__(cls, handler)\n  File \"/home/runner/work/galaxy/galaxy/galaxy root/.venv/lib/python3.8/site-packages/pydantic/main.py\", line 670, in __get_pydantic_core_schema__\n    return handler(source)\n  File \"/home/runner/work/galaxy/galaxy/galaxy root/.venv/lib/python3.8/site-packages/pydantic/_internal/_schema_generation_shared.py\", line 83, in __call__\n    schema = self._handler(source_type)\n  File \"/home/runner/work/galaxy/galaxy/galaxy root/.venv/lib/python3.8/site-packages/pydantic/_internal/_generate_schema.py\", line 655, in generate_schema\n    schema = self._generate_schema_inner(obj)\n  File \"/home/runner/work/galaxy/galaxy/galaxy root/.venv/lib/python3.8/site-packages/pydantic/_internal/_generate_schema.py\", line 924, in _generate_schema_inner\n    return self._model_schema(obj)\n  File \"/home/runner/work/galaxy/galaxy/galaxy root/.venv/lib/python3.8/site-packages/pydantic/_internal/_generate_schema.py\", line 739, in _model_schema\n    {k: self._generate_md_field_schema(k, v, decorators) for k, v in fields.items()},\n  File \"/home/runner/work/galaxy/galaxy/galaxy root/.venv/lib/python3.8/site-packages/pydantic/_internal/_generate_schema.py\", line 739, in <dictcomp>\n    {k: self._generate_md_field_schema(k, v, decorators) for k, v in fields.items()},\n  File \"/home/runner/work/galaxy/galaxy/galaxy root/.venv/lib/python3.8/site-packages/pydantic/_internal/_generate_schema.py\", line 1115, in _generate_md_field_schema\n    common_field = self._common_field_schema(name, field_info, decorators)\n  File \"/home/runner/work/galaxy/galaxy/galaxy root/.venv/lib/python3.8/site-packages/pydantic/_internal/_generate_schema.py\", line 1304, in _common_field_schema\n    schema = self._apply_annotations(\n  File \"/home/runner/work/galaxy/galaxy/galaxy root/.venv/lib/python3.8/site-packages/pydantic/_internal/_generate_schema.py\", line 2104, in _apply_annotations\n    schema = get_inner_schema(source_type)\n  File \"/home/runner/work/galaxy/galaxy/galaxy root/.venv/lib/python3.8/site-packages/pydantic/_internal/_schema_generation_shared.py\", line 83, in __call__\n    schema = self._handler(source_type)\n  File \"/home/runner/work/galaxy/galaxy/galaxy root/.venv/lib/python3.8/site-packages/pydantic/_internal/_generate_schema.py\", line 2093, in inner_handler\n    return transform_inner_schema(schema)\n  File \"/home/runner/work/galaxy/galaxy/galaxy root/.venv/lib/python3.8/site-packages/pydantic/_internal/_generate_schema.py\", line 1294, in set_discriminator\n    schema = self._apply_discriminator_to_union(schema, field_info.discriminator)\n  File \"/home/runner/work/galaxy/galaxy/galaxy root/.venv/lib/python3.8/site-packages/pydantic/_internal/_generate_schema.py\", line 574, in _apply_discriminator_to_union\n    return _discriminated_union.apply_discriminator(\n  File \"/home/runner/work/galaxy/galaxy/galaxy root/.venv/lib/python3.8/site-packages/pydantic/_internal/_discriminated_union.py\", line 97, in apply_discriminator\n    return _ApplyInferredDiscriminator(discriminator, definitions or {}).apply(schema)\n  File \"/home/runner/work/galaxy/galaxy/galaxy root/.venv/lib/python3.8/site-packages/pydantic/_internal/_discriminated_union.py\", line 191, in apply\n    schema = self._apply_to_root(schema)\n  File \"/home/runner/work/galaxy/galaxy/galaxy root/.venv/lib/python3.8/site-packages/pydantic/_internal/_discriminated_union.py\", line 227, in _apply_to_root\n    self._handle_choice(choice)\n  File \"/home/runner/work/galaxy/galaxy/galaxy root/.venv/lib/python3.8/site-packages/pydantic/_internal/_discriminated_union.py\", line 289, in _handle_choice\n    raise TypeError(\nTypeError: 'dict' is not a valid discriminated union variant; should be a `BaseModel` or `dataclass`\n```","shortMessageHtmlLink":"Fix TypeError from Pydantic 2.9.0"}},{"before":"f2d62b031cd6dea6cb6602f08bd4ac74bb91c458","after":"b9a65f2718bee2fddb06b0f8f5518ab73ced557a","ref":"refs/heads/dev_auto_update_dependencies","pushedAt":"2024-09-07T16:45:54.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"nsoranzo","name":"Nicola Soranzo","path":"/nsoranzo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4924623?s=80&v=4"},"commit":{"message":"Fix TypeError from Pydantic 2.9.0\n\nFix the following traceback:\n```\nTraceback (most recent call last):\n  File \"scripts/dump_openapi_schema.py\", line 50, in <module>\n    write_open_api_schema()\n  File \"/home/runner/work/galaxy/galaxy/galaxy root/.venv/lib/python3.8/site-packages/click/core.py\", line 1157, in __call__\n    return self.main(*args, **kwargs)\n  File \"/home/runner/work/galaxy/galaxy/galaxy root/.venv/lib/python3.8/site-packages/click/core.py\", line 1078, in main\n    rv = self.invoke(ctx)\n  File \"/home/runner/work/galaxy/galaxy/galaxy root/.venv/lib/python3.8/site-packages/click/core.py\", line 1434, in invoke\n    return ctx.invoke(self.callback, **ctx.params)\n  File \"/home/runner/work/galaxy/galaxy/galaxy root/.venv/lib/python3.8/site-packages/click/core.py\", line 783, in invoke\n    return __callback(*args, **kwargs)\n  File \"scripts/dump_openapi_schema.py\", line 37, in write_open_api_schema\n    openapi_schema = get_openapi_schema()\n  File \"/home/runner/work/galaxy/galaxy/galaxy root/lib/galaxy/webapps/galaxy/fast_app.py\", line 166, in get_openapi_schema\n    include_all_package_routers(app, \"galaxy.webapps.galaxy.api\")\n  File \"/home/runner/work/galaxy/galaxy/galaxy root/lib/galaxy/webapps/base/api.py\", line 250, in include_all_package_routers\n    for _, module in walk_controller_modules(package_name):\n  File \"/home/runner/work/galaxy/galaxy/galaxy root/lib/galaxy/web/framework/base.py\", line 617, in walk_controller_modules\n    module = import_module(module_name)\n  File \"/opt/hostedtoolcache/Python/3.8.18/x64/lib/python3.8/importlib/__init__.py\", line 127, in import_module\n    return _bootstrap._gcd_import(name[level:], package, level)\n  File \"<frozen importlib._bootstrap>\", line 1014, in _gcd_import\n  File \"<frozen importlib._bootstrap>\", line 991, in _find_and_load\n  File \"<frozen importlib._bootstrap>\", line 975, in _find_and_load_unlocked\n  File \"<frozen importlib._bootstrap>\", line 671, in _load_unlocked\n  File \"<frozen importlib._bootstrap_external>\", line 843, in exec_module\n  File \"<frozen importlib._bootstrap>\", line 219, in _call_with_frames_removed\n  File \"/home/runner/work/galaxy/galaxy/galaxy root/lib/galaxy/webapps/galaxy/api/workflows.py\", line 79, in <module>\n    from galaxy.schema.workflows import (\n  File \"/home/runner/work/galaxy/galaxy/galaxy root/lib/galaxy/schema/workflows.py\", line 179, in <module>\n    class StoredWorkflowDetailed(StoredWorkflowSummary):\n  File \"/home/runner/work/galaxy/galaxy/galaxy root/.venv/lib/python3.8/site-packages/pydantic/_internal/_model_construction.py\", line 223, in __new__\n    complete_model_class(\n  File \"/home/runner/work/galaxy/galaxy/galaxy root/.venv/lib/python3.8/site-packages/pydantic/_internal/_model_construction.py\", line 568, in complete_model_class\n    schema = cls.__get_pydantic_core_schema__(cls, handler)\n  File \"/home/runner/work/galaxy/galaxy/galaxy root/.venv/lib/python3.8/site-packages/pydantic/main.py\", line 670, in __get_pydantic_core_schema__\n    return handler(source)\n  File \"/home/runner/work/galaxy/galaxy/galaxy root/.venv/lib/python3.8/site-packages/pydantic/_internal/_schema_generation_shared.py\", line 83, in __call__\n    schema = self._handler(source_type)\n  File \"/home/runner/work/galaxy/galaxy/galaxy root/.venv/lib/python3.8/site-packages/pydantic/_internal/_generate_schema.py\", line 655, in generate_schema\n    schema = self._generate_schema_inner(obj)\n  File \"/home/runner/work/galaxy/galaxy/galaxy root/.venv/lib/python3.8/site-packages/pydantic/_internal/_generate_schema.py\", line 924, in _generate_schema_inner\n    return self._model_schema(obj)\n  File \"/home/runner/work/galaxy/galaxy/galaxy root/.venv/lib/python3.8/site-packages/pydantic/_internal/_generate_schema.py\", line 739, in _model_schema\n    {k: self._generate_md_field_schema(k, v, decorators) for k, v in fields.items()},\n  File \"/home/runner/work/galaxy/galaxy/galaxy root/.venv/lib/python3.8/site-packages/pydantic/_internal/_generate_schema.py\", line 739, in <dictcomp>\n    {k: self._generate_md_field_schema(k, v, decorators) for k, v in fields.items()},\n  File \"/home/runner/work/galaxy/galaxy/galaxy root/.venv/lib/python3.8/site-packages/pydantic/_internal/_generate_schema.py\", line 1115, in _generate_md_field_schema\n    common_field = self._common_field_schema(name, field_info, decorators)\n  File \"/home/runner/work/galaxy/galaxy/galaxy root/.venv/lib/python3.8/site-packages/pydantic/_internal/_generate_schema.py\", line 1304, in _common_field_schema\n    schema = self._apply_annotations(\n  File \"/home/runner/work/galaxy/galaxy/galaxy root/.venv/lib/python3.8/site-packages/pydantic/_internal/_generate_schema.py\", line 2104, in _apply_annotations\n    schema = get_inner_schema(source_type)\n  File \"/home/runner/work/galaxy/galaxy/galaxy root/.venv/lib/python3.8/site-packages/pydantic/_internal/_schema_generation_shared.py\", line 83, in __call__\n    schema = self._handler(source_type)\n  File \"/home/runner/work/galaxy/galaxy/galaxy root/.venv/lib/python3.8/site-packages/pydantic/_internal/_generate_schema.py\", line 2093, in inner_handler\n    return transform_inner_schema(schema)\n  File \"/home/runner/work/galaxy/galaxy/galaxy root/.venv/lib/python3.8/site-packages/pydantic/_internal/_generate_schema.py\", line 1294, in set_discriminator\n    schema = self._apply_discriminator_to_union(schema, field_info.discriminator)\n  File \"/home/runner/work/galaxy/galaxy/galaxy root/.venv/lib/python3.8/site-packages/pydantic/_internal/_generate_schema.py\", line 574, in _apply_discriminator_to_union\n    return _discriminated_union.apply_discriminator(\n  File \"/home/runner/work/galaxy/galaxy/galaxy root/.venv/lib/python3.8/site-packages/pydantic/_internal/_discriminated_union.py\", line 97, in apply_discriminator\n    return _ApplyInferredDiscriminator(discriminator, definitions or {}).apply(schema)\n  File \"/home/runner/work/galaxy/galaxy/galaxy root/.venv/lib/python3.8/site-packages/pydantic/_internal/_discriminated_union.py\", line 191, in apply\n    schema = self._apply_to_root(schema)\n  File \"/home/runner/work/galaxy/galaxy/galaxy root/.venv/lib/python3.8/site-packages/pydantic/_internal/_discriminated_union.py\", line 227, in _apply_to_root\n    self._handle_choice(choice)\n  File \"/home/runner/work/galaxy/galaxy/galaxy root/.venv/lib/python3.8/site-packages/pydantic/_internal/_discriminated_union.py\", line 289, in _handle_choice\n    raise TypeError(\nTypeError: 'dict' is not a valid discriminated union variant; should be a `BaseModel` or `dataclass`\n```","shortMessageHtmlLink":"Fix TypeError from Pydantic 2.9.0"}},{"before":"e27cc79993440160537f7f9552ec7b959393873e","after":"f2d62b031cd6dea6cb6602f08bd4ac74bb91c458","ref":"refs/heads/dev_auto_update_dependencies","pushedAt":"2024-09-07T03:45:16.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"galaxybot","name":null,"path":"/galaxybot","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/14315658?s=80&v=4"},"commit":{"message":"Update Python dependencies\n\nby running `make update-dependencies`.","shortMessageHtmlLink":"Update Python 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