From 1ce48c8a2bb0977bf29a4ac0edfb531626715130 Mon Sep 17 00:00:00 2001 From: galaxybot Date: Sat, 30 Sep 2023 03:12:28 +0000 Subject: [PATCH] Update Python dependencies --- lib/galaxy/dependencies/dev-requirements.txt | 12 ++++++------ lib/galaxy/dependencies/pinned-requirements.txt | 8 ++++---- .../dependencies/pinned-typecheck-requirements.txt | 6 +++--- 3 files changed, 13 insertions(+), 13 deletions(-) diff --git a/lib/galaxy/dependencies/dev-requirements.txt b/lib/galaxy/dependencies/dev-requirements.txt index 2ef5e06b919b..055d76024a6f 100644 --- a/lib/galaxy/dependencies/dev-requirements.txt +++ b/lib/galaxy/dependencies/dev-requirements.txt @@ -33,7 +33,7 @@ darker==1.7.2 ; python_version >= "3.7" and python_version < "3.12" defusedxml==0.7.1 ; python_version >= "3.7" and python_version < "3.12" deprecated==1.2.14 ; python_version >= "3.7" and python_version < "3.12" docutils==0.18.1 ; python_version >= "3.7" and python_version < "3.12" -exceptiongroup==1.1.3 ; python_version >= "3.7" and python_version < "3.12" +exceptiongroup==1.1.3 ; python_version >= "3.7" and python_version < "3.11" filelock==3.12.2 ; python_version >= "3.7" and python_version < "3.12" fluent-logger==0.10.0 ; python_version >= "3.7" and python_version < "3.12" fonttools==4.38.0 ; python_version >= "3.7" and python_version < "3.12" @@ -90,7 +90,7 @@ prompt-toolkit==3.0.39 ; python_version >= "3.7" and python_version < "3.12" psutil==5.9.5 ; python_version >= "3.7" and python_version < "3.12" and sys_platform != "cygwin" py==1.11.0 ; python_version >= "3.7" and python_version < "3.12" pycparser==2.21 ; python_version >= "3.7" and python_version < "3.12" -pygithub==1.59.1 ; python_version >= "3.7" and python_version < "3.12" +pygithub==2.1.1 ; python_version >= "3.7" and python_version < "3.12" pygments==2.16.1 ; python_version >= "3.7" and python_version < "3.12" pyjwt[crypto]==2.8.0 ; python_version >= "3.7" and python_version < "3.12" pynacl==1.5.0 ; python_version >= "3.7" and python_version < "3.12" @@ -125,7 +125,7 @@ ruamel-yaml==0.17.21 ; python_version >= "3.7" and python_version < "3.12" schema-salad==8.4.20230808163024 ; python_version >= "3.7" and python_version < "3.12" scipy==1.7.3 ; python_version >= "3.7" and python_version < "3.8" scipy==1.10.1 ; python_version >= "3.8" and python_version < "3.9" -scipy==1.11.2 ; python_version >= "3.9" and python_version < "3.12" +scipy==1.11.3 ; python_version >= "3.9" and python_version < "3.12" secretstorage==3.3.3 ; python_version >= "3.7" and python_version < "3.12" and sys_platform == "linux" selenium==4.11.2 ; python_version >= "3.7" and python_version < "3.12" seletools==1.4.0 ; python_version >= "3.7" and python_version < "3.12" @@ -148,19 +148,19 @@ testfixtures==7.2.0 ; python_version >= "3.7" and python_version < "3.12" tinydb==4.8.0 ; python_version >= "3.7" and python_version < "3.12" toml==0.10.2 ; python_version >= "3.7" and python_version < "3.12" tomli==2.0.1 ; python_version >= "3.7" and python_full_version <= "3.11.0a6" -trio-websocket==0.10.4 ; python_version >= "3.7" and python_version < "3.12" +trio-websocket==0.11.1 ; python_version >= "3.7" and python_version < "3.12" trio==0.22.2 ; python_version >= "3.7" and python_version < "3.12" tuspy==1.0.1 ; python_version >= "3.7" and python_version < "3.12" twill==3.1 ; python_version >= "3.7" and python_version < "3.12" twine==4.0.2 ; python_version >= "3.7" and python_version < "3.12" typed-ast==1.5.5 ; python_version < "3.8" and implementation_name == "cpython" and python_version >= "3.7" -types-pyyaml==6.0.12.11 ; python_version >= "3.7" and python_version < "3.12" +types-pyyaml==6.0.12.12 ; python_version >= "3.7" and python_version < "3.12" typing-extensions==4.7.1 ; python_version >= "3.7" and python_version < "3.12" urllib3==1.26.16 ; python_version >= "3.7" and python_version < "3.12" urllib3[socks]==1.26.16 ; python_version >= "3.7" and python_version < "3.12" vine==5.0.0 ; python_version >= "3.7" and python_version < "3.12" watchdog==3.0.0 ; python_version >= "3.7" and python_version < "3.12" -wcwidth==0.2.6 ; python_version >= "3.7" and python_version < "3.12" +wcwidth==0.2.7 ; python_version >= "3.7" and python_version < "3.12" webencodings==0.5.1 ; python_version >= "3.7" and python_version < "3.12" werkzeug==2.2.3 ; python_version >= "3.7" and python_version < "3.12" wrapt==1.15.0 ; python_version >= "3.7" and python_version < "3.12" diff --git a/lib/galaxy/dependencies/pinned-requirements.txt b/lib/galaxy/dependencies/pinned-requirements.txt index 4b851aed081a..bea205d7bae2 100644 --- a/lib/galaxy/dependencies/pinned-requirements.txt +++ b/lib/galaxy/dependencies/pinned-requirements.txt @@ -101,7 +101,7 @@ mdurl==0.1.2 ; python_version >= "3.7" and python_version < "3.12" mercurial==6.5.2 ; python_version >= "3.7" and python_version < "3.12" mistune==2.0.5 ; python_version >= "3.7" and python_version < "3.12" mrcfile==1.4.3 ; python_version >= "3.7" and python_version < "3.12" -msal==1.24.0 ; python_version >= "3.7" and python_version < "3.12" +msal==1.24.1 ; python_version >= "3.7" and python_version < "3.12" msgpack==1.0.5 ; python_version >= "3.7" and python_version < "3.12" multidict==6.0.4 ; python_version >= "3.7" and python_version < "3.12" mypy-extensions==1.0.0 ; python_version >= "3.7" and python_version < "3.12" @@ -128,8 +128,8 @@ pyasn1==0.5.0 ; python_version >= "3.7" and python_version < "3.12" pycparser==2.21 ; python_version >= "3.7" and python_version < "3.12" pycryptodome==3.19.0 ; python_version >= "3.7" and python_version < "3.12" pydantic-tes==0.1.5 ; python_version >= "3.7" and python_version < "3.12" -pydantic==1.10.12 ; python_version >= "3.7" and python_version < "3.12" -pydantic[email]==1.10.12 ; python_version >= "3.7" and python_version < "3.12" +pydantic==1.10.13 ; python_version >= "3.7" and python_version < "3.12" +pydantic[email]==1.10.13 ; python_version >= "3.7" and python_version < "3.12" pydot==1.4.2 ; python_version >= "3.7" and python_version < "3.12" pyeventsystem==0.1.0 ; python_version >= "3.7" and python_version < "3.12" pyfaidx==0.7.2.2 ; python_version >= "3.7" and python_version < "3.12" @@ -198,7 +198,7 @@ urllib3==1.26.16 ; python_version >= "3.7" and python_version < "3.12" uvicorn==0.22.0 ; python_version >= "3.7" and python_version < "3.12" uvloop==0.17.0 ; python_version >= "3.7" and python_version < "3.12" vine==5.0.0 ; python_version >= "3.7" and python_version < "3.12" -wcwidth==0.2.6 ; python_version >= "3.7" and python_version < "3.12" +wcwidth==0.2.7 ; python_version >= "3.7" and python_version < "3.12" webencodings==0.5.1 ; python_version >= "3.7" and python_version < "3.12" webob==1.8.7 ; python_version >= "3.7" and python_version < "3.12" whoosh==2.7.4 ; python_version >= "3.7" and python_version < "3.12" diff --git a/lib/galaxy/dependencies/pinned-typecheck-requirements.txt b/lib/galaxy/dependencies/pinned-typecheck-requirements.txt index 3b8a5d7bc69b..bd28fe6209bf 100644 --- a/lib/galaxy/dependencies/pinned-typecheck-requirements.txt +++ b/lib/galaxy/dependencies/pinned-typecheck-requirements.txt @@ -3,7 +3,7 @@ cryptography==41.0.4 ; python_version >= "3.7" and python_version < "3.12" mypy-extensions==1.0.0 ; python_version >= "3.7" and python_version < "3.12" mypy==1.4.1 ; python_version >= "3.7" and python_version < "3.12" pycparser==2.21 ; python_version >= "3.7" and python_version < "3.12" -pydantic==1.10.12 ; python_version >= "3.7" and python_version < "3.12" +pydantic==1.10.13 ; python_version >= "3.7" and python_version < "3.12" tomli==2.0.1 ; python_version >= "3.7" and python_version < "3.11" typed-ast==1.5.5 ; python_version >= "3.7" and python_version < "3.8" types-bleach==6.0.0.4 ; python_version >= "3.7" and python_version < "3.12" @@ -15,8 +15,8 @@ types-markdown==3.4.2.10 ; python_version >= "3.7" and python_version < "3.12" types-paramiko==3.3.0.0 ; python_version >= "3.7" and python_version < "3.12" types-pkg-resources==0.1.3 ; python_version >= "3.7" and python_version < "3.12" types-python-dateutil==2.8.19.14 ; python_version >= "3.7" and python_version < "3.12" -types-pyyaml==6.0.12.11 ; python_version >= "3.7" and python_version < "3.12" -types-requests==2.31.0.3 ; python_version >= "3.7" and python_version < "3.12" +types-pyyaml==6.0.12.12 ; python_version >= "3.7" and python_version < "3.12" +types-requests==2.31.0.6 ; python_version >= "3.7" and python_version < "3.12" types-six==1.16.21.9 ; python_version >= "3.7" and python_version < "3.12" types-urllib3==1.26.25.14 ; python_version >= "3.7" and python_version < "3.12" typing-extensions==4.7.1 ; python_version >= "3.7" and python_version < "3.12"