From 32b16ef2269fbd2d30fc7492a0d6952e6d8eb163 Mon Sep 17 00:00:00 2001 From: galaxybot Date: Sat, 27 Apr 2024 03:26:22 +0000 Subject: [PATCH] Update Python dependencies --- lib/galaxy/dependencies/dev-requirements.txt | 16 ++++++++-------- .../dependencies/pinned-lint-requirements.txt | 4 ++-- lib/galaxy/dependencies/pinned-requirements.txt | 6 +++--- .../pinned-typecheck-requirements.txt | 4 ++-- 4 files changed, 15 insertions(+), 15 deletions(-) diff --git a/lib/galaxy/dependencies/dev-requirements.txt b/lib/galaxy/dependencies/dev-requirements.txt index f963631db7b0..36558551d99b 100644 --- a/lib/galaxy/dependencies/dev-requirements.txt +++ b/lib/galaxy/dependencies/dev-requirements.txt @@ -9,7 +9,7 @@ axe-selenium-python==2.1.6 ; python_version >= "3.8" and python_version < "3.13" babel==2.14.0 ; python_version >= "3.8" and python_version < "3.13" backports-tarfile==1.1.1 ; python_version >= "3.8" and python_version < "3.12" backports-zoneinfo==0.2.1 ; python_version >= "3.8" and python_version < "3.9" -black==24.4.0 ; python_version >= "3.8" and python_version < "3.13" +black==24.4.2 ; python_version >= "3.8" and python_version < "3.13" build==1.2.1 ; python_version >= "3.8" and python_version < "3.13" cachecontrol[filecache]==0.14.0 ; python_version >= "3.8" and python_version < "3.13" certifi==2024.2.2 ; python_version >= "3.8" and python_version < "3.13" @@ -19,9 +19,9 @@ click==8.1.7 ; python_version >= "3.8" and python_version < "3.13" codespell==2.2.6 ; python_version >= "3.8" and python_version < "3.13" colorama==0.4.6 ; python_version >= "3.8" and python_version < "3.13" and (sys_platform == "win32" or platform_system == "Windows" or os_name == "nt") contourpy==1.1.1 ; python_version >= "3.8" and python_version < "3.13" -coverage[toml]==7.4.4 ; python_version >= "3.8" and python_version < "3.13" +coverage[toml]==7.5.0 ; python_version >= "3.8" and python_version < "3.13" cryptography==42.0.5 ; python_version >= "3.8" and python_version < "3.13" -cwltest==2.5.20240304113812 ; python_version >= "3.8" and python_version < "3.13" +cwltest==2.5.20240425111257 ; python_version >= "3.8" and python_version < "3.13" cycler==0.12.1 ; python_version >= "3.8" and python_version < "3.13" darker==2.1.1 ; python_version >= "3.8" and python_version < "3.13" darkgraylib==1.2.1 ; python_version >= "3.8" and python_version < "3.13" @@ -56,7 +56,7 @@ jinja2==3.1.3 ; python_version >= "3.8" and python_version < "3.13" jsonschema-specifications==2023.12.1 ; python_version >= "3.9" and python_version < "3.13" jsonschema==4.20.0 ; python_version >= "3.9" and python_version < "3.13" junit-xml==1.9 ; python_version >= "3.8" and python_version < "3.13" -keyring==25.1.0 ; python_version >= "3.8" and python_version < "3.13" +keyring==25.2.0 ; python_version >= "3.8" and python_version < "3.13" kiwisolver==1.4.5 ; python_version >= "3.8" and python_version < "3.13" lxml==4.9.4 ; python_version >= "3.8" and python_version < "3.13" markdown-it-py==3.0.0 ; python_version >= "3.8" and python_version < "3.13" @@ -83,7 +83,7 @@ pbr==6.0.0 ; python_version >= "3.9" and python_version < "3.13" pillow==10.3.0 ; python_version >= "3.8" and python_version < "3.13" pkce==1.0.3 ; python_version >= "3.8" and python_version < "3.13" pkginfo==1.10.0 ; python_version >= "3.8" and python_version < "3.13" -platformdirs==4.2.0 ; python_version >= "3.8" and python_version < "3.13" +platformdirs==4.2.1 ; python_version >= "3.8" and python_version < "3.13" playwright==1.43.0 ; python_version >= "3.8" and python_version < "3.13" pluggy==1.5.0 ; python_version >= "3.8" and python_version < "3.13" port-for==0.7.2 ; python_version >= "3.8" and python_version < "3.13" @@ -110,7 +110,7 @@ pytest-mock==3.14.0 ; python_version >= "3.8" and python_version < "3.13" pytest-playwright==0.4.4 ; python_version >= "3.8" and python_version < "3.13" pytest-postgresql==6.0.0 ; python_version >= "3.8" and python_version < "3.13" pytest-shard==0.1.2 ; python_version >= "3.8" and python_version < "3.13" -pytest==7.4.4 ; python_version >= "3.8" and python_version < "3.13" +pytest==8.1.2 ; python_version >= "3.8" and python_version < "3.13" python-dateutil==2.9.0.post0 ; python_version >= "3.8" and python_version < "3.13" python-irodsclient==2.0.0 ; python_version >= "3.8" and python_version < "3.13" python-slugify==8.0.4 ; python_version >= "3.8" and python_version < "3.13" @@ -119,7 +119,7 @@ pywin32-ctypes==0.2.2 ; python_version >= "3.8" and python_version < "3.13" and pyyaml==6.0.1 ; python_version >= "3.8" and python_version < "3.13" rdflib==6.3.2 ; python_version >= "3.8" and python_version < "3.13" readme-renderer==43.0 ; python_version >= "3.8" and python_version < "3.13" -referencing==0.34.0 ; python_version >= "3.9" and python_version < "3.13" +referencing==0.35.0 ; python_version >= "3.9" and python_version < "3.13" requests-toolbelt==1.0.0 ; python_version >= "3.8" and python_version < "3.13" requests==2.31.0 ; python_version >= "3.8" and python_version < "3.13" responses==0.25.0 ; python_version >= "3.8" and python_version < "3.13" @@ -133,7 +133,7 @@ schema-salad==8.5.20240410123758 ; python_version >= "3.8" and python_version < scipy==1.10.1 ; python_version >= "3.8" and python_version < "3.9" scipy==1.13.0 ; python_version >= "3.9" and python_version < "3.13" secretstorage==3.3.3 ; python_version >= "3.8" and python_version < "3.13" and sys_platform == "linux" -selenium==4.19.0 ; python_version >= "3.8" and python_version < "3.13" +selenium==4.20.0 ; python_version >= "3.8" and python_version < "3.13" seletools==1.4.0 ; python_version >= "3.8" and python_version < "3.13" setuptools==69.5.1 ; python_version >= "3.8" and python_version < "3.13" six==1.16.0 ; python_version >= "3.8" and python_version < "3.13" diff --git a/lib/galaxy/dependencies/pinned-lint-requirements.txt b/lib/galaxy/dependencies/pinned-lint-requirements.txt index fea2eeeb9fa8..951a6bf4792f 100644 --- a/lib/galaxy/dependencies/pinned-lint-requirements.txt +++ b/lib/galaxy/dependencies/pinned-lint-requirements.txt @@ -1,7 +1,7 @@ attrs==23.2.0 flake8==7.0.0 -flake8-bugbear==24.4.21 +flake8-bugbear==24.4.26 mccabe==0.7.0 pycodestyle==2.11.1 pyflakes==3.2.0 -ruff==0.4.1 +ruff==0.4.2 diff --git a/lib/galaxy/dependencies/pinned-requirements.txt b/lib/galaxy/dependencies/pinned-requirements.txt index 37b51a528176..63dc43f59495 100644 --- a/lib/galaxy/dependencies/pinned-requirements.txt +++ b/lib/galaxy/dependencies/pinned-requirements.txt @@ -148,7 +148,7 @@ pylibmagic==0.5.0 ; python_version >= "3.8" and python_version < "3.13" pynacl==1.5.0 ; python_version >= "3.8" and python_version < "3.13" pyparsing==3.1.2 ; python_version >= "3.8" and python_version < "3.13" pyreadline3==3.4.1 ; sys_platform == "win32" and python_version >= "3.8" and python_version < "3.13" -pysam==0.22.0 ; python_version >= "3.8" and python_version < "3.13" +pysam==0.22.1 ; python_version >= "3.8" and python_version < "3.13" python-dateutil==2.9.0.post0 ; python_version >= "3.8" and python_version < "3.13" python-magic==0.4.27 ; python_version >= "3.8" and python_version < "3.13" python-multipart==0.0.9 ; python_version >= "3.8" and python_version < "3.13" @@ -157,7 +157,7 @@ pytz==2024.1 ; python_version >= "3.8" and python_version < "3.13" pyyaml==6.0.1 ; python_version >= "3.8" and python_version < "3.13" pyzmq==26.0.2 ; python_version >= "3.8" and python_version < "3.13" rdflib==6.3.2 ; python_version >= "3.8" and python_version < "3.13" -referencing==0.34.0 ; python_version >= "3.8" and python_version < "3.13" +referencing==0.35.0 ; python_version >= "3.8" and python_version < "3.13" refgenconf==0.12.2 ; python_version >= "3.8" and python_version < "3.13" regex==2024.4.16 ; python_version >= "3.8" and python_version < "3.13" repoze-lru==0.7 ; python_version >= "3.8" and python_version < "3.13" @@ -178,7 +178,7 @@ setuptools==69.5.1 ; python_version >= "3.8" and python_version < "3.13" shellescape==3.8.1 ; python_version >= "3.8" and python_version < "3.13" six==1.16.0 ; python_version >= "3.8" and python_version < "3.13" sniffio==1.3.1 ; python_version >= "3.8" and python_version < "3.13" -social-auth-core==4.5.3 ; python_version >= "3.8" and python_version < "3.13" +social-auth-core==4.5.4 ; python_version >= "3.8" and python_version < "3.13" sortedcontainers==2.4.0 ; python_version >= "3.8" and python_version < "3.13" spython==0.3.13 ; python_version >= "3.8" and python_version < "3.13" sqlalchemy==2.0.29 ; python_version >= "3.8" and python_version < "3.13" diff --git a/lib/galaxy/dependencies/pinned-typecheck-requirements.txt b/lib/galaxy/dependencies/pinned-typecheck-requirements.txt index 014e6a3a3cb5..99e1264d74fd 100644 --- a/lib/galaxy/dependencies/pinned-typecheck-requirements.txt +++ b/lib/galaxy/dependencies/pinned-typecheck-requirements.txt @@ -3,7 +3,7 @@ cffi==1.16.0 ; python_version >= "3.8" and python_version < "3.13" and platform_ cryptography==42.0.5 ; python_version >= "3.8" and python_version < "3.13" lxml-stubs==0.5.1 ; python_version >= "3.8" and python_version < "3.13" mypy-extensions==1.0.0 ; python_version >= "3.8" and python_version < "3.13" -mypy==1.9.0 ; python_version >= "3.8" and python_version < "3.13" +mypy==1.10.0 ; python_version >= "3.8" and python_version < "3.13" pycparser==2.22 ; python_version >= "3.8" and python_version < "3.13" and platform_python_implementation != "PyPy" pydantic-core==2.18.2 ; python_version >= "3.8" and python_version < "3.13" pydantic==2.7.1 ; python_version >= "3.8" and python_version < "3.13" @@ -20,6 +20,6 @@ types-pkg-resources==0.1.3 ; python_version >= "3.8" and python_version < "3.13" types-python-dateutil==2.9.0.20240316 ; python_version >= "3.8" and python_version < "3.13" types-pyyaml==6.0.12.20240311 ; python_version >= "3.8" and python_version < "3.13" types-requests==2.31.0.6 ; python_version >= "3.8" and python_version < "3.13" -types-six==1.16.21.20240311 ; python_version >= "3.8" and python_version < "3.13" +types-six==1.16.21.20240425 ; python_version >= "3.8" and python_version < "3.13" types-urllib3==1.26.25.14 ; python_version >= "3.8" and python_version < "3.13" typing-extensions==4.11.0 ; python_version >= "3.8" and python_version < "3.13"