diff --git a/lib/galaxy/dependencies/pinned-lint-requirements.txt b/lib/galaxy/dependencies/pinned-lint-requirements.txt
index e60af3721d60..f63b2768119c 100644
--- a/lib/galaxy/dependencies/pinned-lint-requirements.txt
+++ b/lib/galaxy/dependencies/pinned-lint-requirements.txt
@@ -5,6 +5,6 @@ importlib-metadata==4.2.0
 mccabe==0.7.0
 pycodestyle==2.9.1
 pyflakes==2.5.0
-ruff==0.0.290
+ruff==0.0.291
 typing_extensions==4.7.1
 zipp==3.15.0
diff --git a/lib/galaxy/dependencies/pinned-requirements.txt b/lib/galaxy/dependencies/pinned-requirements.txt
index af8f7fb5a32f..4b851aed081a 100644
--- a/lib/galaxy/dependencies/pinned-requirements.txt
+++ b/lib/galaxy/dependencies/pinned-requirements.txt
@@ -91,7 +91,7 @@ jmespath==1.0.1 ; python_version >= "3.7" and python_version < "3.12"
 jsonref==1.1.0 ; python_version >= "3.7" and python_version < "3.12"
 jsonschema==4.17.3 ; python_version >= "3.7" and python_version < "3.12"
 kombu==5.2.4 ; python_version >= "3.7" and python_version < "3.12"
-lagom==2.4.1 ; python_version >= "3.7" and python_version < "3.12"
+lagom==2.5.0 ; python_version >= "3.7" and python_version < "3.12"
 lxml==4.9.3 ; python_version >= "3.7" and python_version < "3.12"
 mako==1.2.4 ; python_version >= "3.7" and python_version < "3.12"
 markdown-it-py==2.2.0 ; python_version >= "3.7" and python_version < "3.12"
@@ -132,7 +132,7 @@ pydantic==1.10.12 ; python_version >= "3.7" and python_version < "3.12"
 pydantic[email]==1.10.12 ; python_version >= "3.7" and python_version < "3.12"
 pydot==1.4.2 ; python_version >= "3.7" and python_version < "3.12"
 pyeventsystem==0.1.0 ; python_version >= "3.7" and python_version < "3.12"
-pyfaidx==0.7.2.1 ; python_version >= "3.7" and python_version < "3.12"
+pyfaidx==0.7.2.2 ; python_version >= "3.7" and python_version < "3.12"
 pygments==2.16.1 ; python_version >= "3.7" and python_version < "3.12"
 pyjwt==2.8.0 ; python_version >= "3.7" and python_version < "3.12"
 pyjwt[crypto]==2.8.0 ; python_version >= "3.7" and python_version < "3.12"
diff --git a/lib/galaxy/dependencies/pinned-typecheck-requirements.txt b/lib/galaxy/dependencies/pinned-typecheck-requirements.txt
index 5237b18bd7dd..3b8a5d7bc69b 100644
--- a/lib/galaxy/dependencies/pinned-typecheck-requirements.txt
+++ b/lib/galaxy/dependencies/pinned-typecheck-requirements.txt
@@ -16,7 +16,7 @@ types-paramiko==3.3.0.0 ; python_version >= "3.7" and python_version < "3.12"
 types-pkg-resources==0.1.3 ; python_version >= "3.7" and python_version < "3.12"
 types-python-dateutil==2.8.19.14 ; python_version >= "3.7" and python_version < "3.12"
 types-pyyaml==6.0.12.11 ; python_version >= "3.7" and python_version < "3.12"
-types-requests==2.31.0.2 ; python_version >= "3.7" and python_version < "3.12"
+types-requests==2.31.0.3 ; python_version >= "3.7" and python_version < "3.12"
 types-six==1.16.21.9 ; python_version >= "3.7" and python_version < "3.12"
 types-urllib3==1.26.25.14 ; python_version >= "3.7" and python_version < "3.12"
 typing-extensions==4.7.1 ; python_version >= "3.7" and python_version < "3.12"