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Update Python dependencies
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@galaxybot
galaxybot authored Feb 3, 2024
1 parent bbfc042 commit fb9f229
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Showing 4 changed files with 39 additions and 39 deletions.
32 changes: 16 additions & 16 deletions lib/galaxy/dependencies/dev-requirements.txt
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Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
aiohttp==3.9.1 ; python_version >= "3.8" and python_version < "3.13"
aiohttp==3.9.3 ; python_version >= "3.8" and python_version < "3.13"
aiosignal==1.3.1 ; python_version >= "3.8" and python_version < "3.13"
alabaster==0.7.13 ; python_version >= "3.8" and python_version < "3.13"
amqp==5.2.0 ; python_version >= "3.8" and python_version < "3.13"
Expand All @@ -15,7 +15,7 @@ black==24.1.1 ; python_version >= "3.8" and python_version < "3.13"
build==1.0.3 ; python_version >= "3.8" and python_version < "3.13"
cachecontrol[filecache]==0.13.1 ; python_version >= "3.8" and python_version < "3.13"
celery==5.3.6 ; python_version >= "3.8" and python_version < "3.13"
certifi==2023.11.17 ; python_version >= "3.8" and python_version < "3.13"
certifi==2024.2.2 ; python_version >= "3.8" and python_version < "3.13"
cffi==1.16.0 ; python_version >= "3.8" and python_version < "3.13"
charset-normalizer==3.3.2 ; python_version >= "3.8" and python_version < "3.13"
click-didyoumean==0.3.0 ; python_version >= "3.8" and python_version < "3.13"
Expand All @@ -26,8 +26,8 @@ codespell==2.2.6 ; python_version >= "3.8" and python_version < "3.13"
colorama==0.4.6 ; python_version >= "3.8" and python_version < "3.13" and (sys_platform == "win32" or platform_system == "Windows" or os_name == "nt")
contourpy==1.1.1 ; python_version >= "3.8" and python_version < "3.13"
coverage[toml]==7.4.1 ; python_version >= "3.8" and python_version < "3.13"
cryptography==42.0.1 ; python_version >= "3.8" and python_version < "3.13"
cwltest==2.4.20231222081524 ; python_version >= "3.8" and python_version < "3.13"
cryptography==42.0.2 ; python_version >= "3.8" and python_version < "3.13"
cwltest==2.4.20240129145612 ; python_version >= "3.8" and python_version < "3.13"
cycler==0.12.1 ; python_version >= "3.8" and python_version < "3.13"
darker==1.7.2 ; python_version >= "3.8" and python_version < "3.13"
defusedxml==0.7.1 ; python_version >= "3.8" and python_version < "3.13"
Expand Down Expand Up @@ -60,7 +60,7 @@ kombu==5.3.5 ; python_version >= "3.8" and python_version < "3.13"
lxml==4.9.4 ; python_version >= "3.8" and python_version < "3.13"
markdown-it-py==3.0.0 ; python_version >= "3.8" and python_version < "3.13"
markdown-it-reporter==0.0.2 ; python_version >= "3.8" and python_version < "3.13"
markupsafe==2.1.4 ; python_version >= "3.8" and python_version < "3.13"
markupsafe==2.1.5 ; python_version >= "3.8" and python_version < "3.13"
matplotlib==3.7.4 ; python_version >= "3.8" and python_version < "3.9"
matplotlib==3.8.2 ; python_version >= "3.9" and python_version < "3.13"
mdit-py-plugins==0.4.0 ; python_version >= "3.8" and python_version < "3.13"
Expand All @@ -69,7 +69,7 @@ mirakuru==2.5.2 ; python_version >= "3.8" and python_version < "3.13"
mistune==2.0.5 ; python_version >= "3.8" and python_version < "3.13"
more-itertools==10.2.0 ; python_version >= "3.8" and python_version < "3.13"
msgpack==1.0.7 ; python_version >= "3.8" and python_version < "3.13"
multidict==6.0.4 ; python_version >= "3.8" and python_version < "3.13"
multidict==6.0.5 ; python_version >= "3.8" and python_version < "3.13"
mypy-extensions==1.0.0 ; python_version >= "3.8" and python_version < "3.13"
myst-parser==2.0.0 ; python_version >= "3.8" and python_version < "3.13"
nh3==0.2.15 ; python_version >= "3.8" and python_version < "3.13"
Expand All @@ -81,7 +81,7 @@ pathspec==0.12.1 ; python_version >= "3.8" and python_version < "3.13"
pillow==10.2.0 ; python_version >= "3.8" and python_version < "3.13"
pkce==1.0.3 ; python_version >= "3.8" and python_version < "3.13"
pkginfo==1.9.6 ; python_version >= "3.8" and python_version < "3.13"
platformdirs==4.1.0 ; python_version >= "3.8" and python_version < "3.13"
platformdirs==4.2.0 ; python_version >= "3.8" and python_version < "3.13"
playwright==1.41.1 ; python_version >= "3.8" and python_version < "3.13"
pluggy==1.4.0 ; python_version >= "3.8" and python_version < "3.13"
port-for==0.7.2 ; python_version >= "3.8" and python_version < "3.13"
Expand All @@ -91,30 +91,30 @@ psutil==5.9.8 ; python_version >= "3.8" and python_version < "3.13" and sys_plat
psycopg==3.1.17 ; python_version >= "3.8" and python_version < "3.13"
pycparser==2.21 ; python_version >= "3.8" and python_version < "3.13"
pyee==11.0.1 ; python_version >= "3.8" and python_version < "3.13"
pygithub==2.1.1 ; python_version >= "3.8" and python_version < "3.13"
pygithub==2.2.0 ; python_version >= "3.8" and python_version < "3.13"
pygments==2.17.2 ; python_version >= "3.8" and python_version < "3.13"
pyjwt[crypto]==2.8.0 ; python_version >= "3.8" and python_version < "3.13"
pynacl==1.5.0 ; python_version >= "3.8" and python_version < "3.13"
pyparsing==3.1.1 ; python_version >= "3.8" and python_version < "3.13"
pyproject-hooks==1.0.0 ; python_version >= "3.8" and python_version < "3.13"
pysocks==1.7.1 ; python_version >= "3.8" and python_version < "3.13"
pytest-asyncio==0.23.3 ; python_version >= "3.8" and python_version < "3.13"
pytest-base-url==2.0.0 ; python_version >= "3.8" and python_version < "3.13"
pytest-base-url==2.1.0 ; python_version >= "3.8" and python_version < "3.13"
pytest-celery==0.0.0 ; python_version >= "3.8" and python_version < "3.13"
pytest-cov==4.1.0 ; python_version >= "3.8" and python_version < "3.13"
pytest-html==4.1.1 ; python_version >= "3.8" and python_version < "3.13"
pytest-httpserver==1.0.8 ; python_version >= "3.8" and python_version < "3.13"
pytest-json-report==1.5.0 ; python_version >= "3.8" and python_version < "3.13"
pytest-metadata==3.0.0 ; python_version >= "3.8" and python_version < "3.13"
pytest-metadata==3.1.0 ; python_version >= "3.8" and python_version < "3.13"
pytest-mock==3.12.0 ; python_version >= "3.8" and python_version < "3.13"
pytest-playwright==0.4.3 ; python_version >= "3.8" and python_version < "3.13"
pytest-postgresql==5.0.0 ; python_version >= "3.8" and python_version < "3.13"
pytest-playwright==0.4.4 ; python_version >= "3.8" and python_version < "3.13"
pytest-postgresql==5.1.0 ; python_version >= "3.8" and python_version < "3.13"
pytest-shard==0.1.2 ; python_version >= "3.8" and python_version < "3.13"
pytest==7.4.4 ; python_version >= "3.8" and python_version < "3.13"
pytest==8.0.0 ; python_version >= "3.8" and python_version < "3.13"
python-dateutil==2.8.2 ; python_version >= "3.8" and python_version < "3.13"
python-irodsclient==1.1.9 ; python_version >= "3.8" and python_version < "3.13"
python-slugify==8.0.2 ; python_version >= "3.8" and python_version < "3.13"
pytz==2023.3.post1 ; python_version >= "3.8" and python_version < "3.9"
python-slugify==8.0.3 ; python_version >= "3.8" and python_version < "3.13"
pytz==2024.1 ; python_version >= "3.8" and python_version < "3.9"
pywin32-ctypes==0.2.2 ; python_version >= "3.8" and python_version < "3.13" and sys_platform == "win32"
pyyaml==6.0.1 ; python_version >= "3.8" and python_version < "3.13"
rdflib==6.3.2 ; python_version >= "3.8" and python_version < "3.13"
Expand Down Expand Up @@ -155,7 +155,7 @@ tomli==2.0.1 ; python_version >= "3.8" and python_full_version <= "3.11.0a6"
trio-websocket==0.11.1 ; python_version >= "3.8" and python_version < "3.13"
trio==0.24.0 ; python_version >= "3.8" and python_version < "3.13"
tuspy==1.0.3 ; python_version >= "3.8" and python_version < "3.13"
twill==3.2.1 ; python_version >= "3.8" and python_version < "3.13"
twill==3.2.2 ; python_version >= "3.8" and python_version < "3.13"
twine==4.0.2 ; python_version >= "3.8" and python_version < "3.13"
typing-extensions==4.9.0 ; python_version >= "3.8" and python_version < "3.13"
tzdata==2023.4 ; python_version >= "3.8" and python_version < "3.13"
Expand Down
2 changes: 1 addition & 1 deletion lib/galaxy/dependencies/pinned-lint-requirements.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -4,4 +4,4 @@ flake8-bugbear==24.1.17
mccabe==0.7.0
pycodestyle==2.11.1
pyflakes==3.2.0
ruff==0.1.14
ruff==0.2.0
32 changes: 16 additions & 16 deletions lib/galaxy/dependencies/pinned-requirements.txt
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Original file line number Diff line number Diff line change
@@ -1,9 +1,9 @@
a2wsgi==1.10.0 ; python_version >= "3.8" and python_version < "3.13"
adal==1.2.7 ; python_version >= "3.8" and python_version < "3.13"
aiobotocore==2.11.1 ; python_version >= "3.8" and python_version < "3.13"
aiobotocore==2.11.2 ; python_version >= "3.8" and python_version < "3.13"
aiodataloader==0.4.0 ; python_version >= "3.8" and python_version < "3.13"
aiofiles==23.2.1 ; python_version >= "3.8" and python_version < "3.13"
aiohttp==3.9.1 ; python_version >= "3.8" and python_version < "3.13"
aiohttp==3.9.3 ; python_version >= "3.8" and python_version < "3.13"
aioitertools==0.11.0 ; python_version >= "3.8" and python_version < "3.13"
aiosignal==1.3.1 ; python_version >= "3.8" and python_version < "3.13"
alembic==1.13.1 ; python_version >= "3.8" and python_version < "3.13"
Expand Down Expand Up @@ -31,11 +31,11 @@ bioblend==1.2.0 ; python_version >= "3.8" and python_version < "3.13"
bleach==6.1.0 ; python_version >= "3.8" and python_version < "3.13"
boltons==23.1.1 ; python_version >= "3.8" and python_version < "3.13"
boto==2.49.0 ; python_version >= "3.8" and python_version < "3.13"
botocore==1.34.27 ; python_version >= "3.8" and python_version < "3.13"
botocore==1.34.34 ; python_version >= "3.8" and python_version < "3.13"
bx-python==0.10.0 ; python_version >= "3.8" and python_version < "3.13"
cachecontrol[filecache]==0.13.1 ; python_version >= "3.8" and python_version < "3.13"
celery==5.3.6 ; python_version >= "3.8" and python_version < "3.13"
certifi==2023.11.17 ; python_version >= "3.8" and python_version < "3.13"
certifi==2024.2.2 ; python_version >= "3.8" and python_version < "3.13"
cffi==1.16.0 ; python_version >= "3.8" and python_version < "3.13"
charset-normalizer==3.3.2 ; python_version >= "3.8" and python_version < "3.13"
cheetah3==3.2.6.post1 ; python_version >= "3.8" and python_version < "3.13"
Expand All @@ -49,7 +49,7 @@ cloudbridge==3.2.0 ; python_version >= "3.8" and python_version < "3.13"
colorama==0.4.6 ; python_version >= "3.8" and python_version < "3.13" and platform_system == "Windows"
coloredlogs==15.0.1 ; python_version >= "3.8" and python_version < "3.13"
conda-package-streaming==0.9.0 ; python_version >= "3.8" and python_version < "3.13"
cryptography==42.0.1 ; python_version >= "3.8" and python_version < "3.13"
cryptography==42.0.2 ; python_version >= "3.8" and python_version < "3.13"
cwl-upgrader==1.2.11 ; python_version >= "3.8" and python_version < "3.13"
cwl-utils==0.32 ; python_version >= "3.8" and python_version < "3.13"
cwltool==3.1.20240112164112 ; python_version >= "3.8" and python_version < "3.13"
Expand Down Expand Up @@ -99,17 +99,17 @@ jsonschema==4.21.1 ; python_version >= "3.8" and python_version < "3.13"
kombu==5.3.5 ; python_version >= "3.8" and python_version < "3.13"
lagom==2.6.0 ; python_version >= "3.8" and python_version < "3.13"
lxml==4.9.4 ; python_version >= "3.8" and python_version < "3.13"
mako==1.3.0 ; python_version >= "3.8" and python_version < "3.13"
mako==1.3.2 ; python_version >= "3.8" and python_version < "3.13"
markdown-it-py==3.0.0 ; python_version >= "3.8" and python_version < "3.13"
markdown==3.5.2 ; python_version >= "3.8" and python_version < "3.13"
markupsafe==2.1.4 ; python_version >= "3.8" and python_version < "3.13"
markupsafe==2.1.5 ; python_version >= "3.8" and python_version < "3.13"
mdurl==0.1.2 ; python_version >= "3.8" and python_version < "3.13"
mercurial==6.6.2 ; python_version >= "3.8" and python_version < "3.13"
mistune==2.0.5 ; python_version >= "3.8" and python_version < "3.13"
mrcfile==1.5.0 ; python_version >= "3.8" and python_version < "3.13"
msal==1.26.0 ; python_version >= "3.8" and python_version < "3.13"
msgpack==1.0.7 ; python_version >= "3.8" and python_version < "3.13"
multidict==6.0.4 ; python_version >= "3.8" and python_version < "3.13"
multidict==6.0.5 ; python_version >= "3.8" and python_version < "3.13"
mypy-extensions==1.0.0 ; python_version >= "3.8" and python_version < "3.13"
networkx==2.5 ; python_version >= "3.8" and python_version < "3.13"
nodeenv==1.8.0 ; python_version >= "3.8" and python_version < "3.13"
Expand All @@ -133,10 +133,10 @@ pulsar-galaxy-lib==0.15.6 ; python_version >= "3.8" and python_version < "3.13"
pyasn1==0.5.1 ; python_version >= "3.8" and python_version < "3.13"
pycparser==2.21 ; python_version >= "3.8" and python_version < "3.13"
pycryptodome==3.20.0 ; python_version >= "3.8" and python_version < "3.13"
pydantic-core==2.14.6 ; python_version >= "3.8" and python_version < "3.13"
pydantic-core==2.16.1 ; python_version >= "3.8" and python_version < "3.13"
pydantic-tes==0.1.5 ; python_version >= "3.8" and python_version < "3.13"
pydantic==2.5.3 ; python_version >= "3.8" and python_version < "3.13"
pydantic[email]==2.5.3 ; python_version >= "3.8" and python_version < "3.13"
pydantic==2.6.0 ; python_version >= "3.8" and python_version < "3.13"
pydantic[email]==2.6.0 ; python_version >= "3.8" and python_version < "3.13"
pydot==2.0.0 ; python_version >= "3.8" and python_version < "3.13"
pyeventsystem==0.1.0 ; python_version >= "3.8" and python_version < "3.13"
pyfaidx==0.8.1.1 ; python_version >= "3.8" and python_version < "3.13"
Expand All @@ -154,11 +154,11 @@ python-jose==3.3.0 ; python_version >= "3.8" and python_version < "3.13"
python-magic==0.4.27 ; python_version >= "3.8" and python_version < "3.13"
python-multipart==0.0.6 ; python_version >= "3.8" and python_version < "3.13"
python3-openid==3.2.0 ; python_version >= "3.8" and python_version < "3.13"
pytz==2023.3.post1 ; python_version >= "3.8" and python_version < "3.13"
pytz==2024.1 ; python_version >= "3.8" and python_version < "3.13"
pyyaml==6.0.1 ; python_version >= "3.8" and python_version < "3.13"
pyzmq==25.1.2 ; python_version >= "3.8" and python_version < "3.13"
rdflib==6.3.2 ; python_version >= "3.8" and python_version < "3.13"
referencing==0.32.1 ; python_version >= "3.8" and python_version < "3.13"
referencing==0.33.0 ; python_version >= "3.8" and python_version < "3.13"
refgenconf==0.12.2 ; python_version >= "3.8" and python_version < "3.13"
regex==2023.12.25 ; python_version >= "3.8" and python_version < "3.13"
repoze-lru==0.7 ; python_version >= "3.8" and python_version < "3.13"
Expand Down Expand Up @@ -202,17 +202,17 @@ tuswsgi==0.5.5 ; python_version >= "3.8" and python_version < "3.13"
typing-extensions==4.9.0 ; python_version >= "3.8" and python_version < "3.13"
tzdata==2023.4 ; python_version >= "3.8" and python_version < "3.13"
tzlocal==5.2 ; python_version >= "3.8" and python_version < "3.13"
ubiquerg==0.6.3 ; python_version >= "3.8" and python_version < "3.13"
ubiquerg==0.7.0 ; python_version >= "3.8" and python_version < "3.13"
urllib3==1.26.18 ; python_version >= "3.8" and python_version < "3.13"
uvicorn==0.27.0 ; python_version >= "3.8" and python_version < "3.13"
uvicorn==0.27.0.post1 ; python_version >= "3.8" and python_version < "3.13"
uvloop==0.19.0 ; python_version >= "3.8" and python_version < "3.13"
vine==5.1.0 ; python_version >= "3.8" and python_version < "3.13"
wcwidth==0.2.13 ; python_version >= "3.8" and python_version < "3.13"
webencodings==0.5.1 ; python_version >= "3.8" and python_version < "3.13"
webob==1.8.7 ; python_version >= "3.8" and python_version < "3.13"
whoosh==2.7.4 ; python_version >= "3.8" and python_version < "3.13"
wrapt==1.16.0 ; python_version >= "3.8" and python_version < "3.13"
yacman==0.9.2 ; python_version >= "3.8" and python_version < "3.13"
yacman==0.9.3 ; python_version >= "3.8" and python_version < "3.13"
yarl==1.9.4 ; python_version >= "3.8" and python_version < "3.13"
zipp==3.17.0 ; python_version >= "3.8" and python_version < "3.13"
zipstream-new==1.1.8 ; python_version >= "3.8" and python_version < "3.13"
Expand Down
12 changes: 6 additions & 6 deletions lib/galaxy/dependencies/pinned-typecheck-requirements.txt
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Original file line number Diff line number Diff line change
@@ -1,19 +1,19 @@
annotated-types==0.6.0 ; python_version >= "3.8" and python_version < "3.13"
cffi==1.16.0 ; python_version >= "3.8" and python_version < "3.13"
cryptography==42.0.1 ; python_version >= "3.8" and python_version < "3.13"
cffi==1.16.0 ; python_version >= "3.8" and python_version < "3.13" and platform_python_implementation != "PyPy"
cryptography==42.0.2 ; python_version >= "3.8" and python_version < "3.13"
lxml-stubs==0.5.1 ; python_version >= "3.8" and python_version < "3.13"
mypy-extensions==1.0.0 ; python_version >= "3.8" and python_version < "3.13"
mypy==1.8.0 ; python_version >= "3.8" and python_version < "3.13"
pycparser==2.21 ; python_version >= "3.8" and python_version < "3.13" and platform_python_implementation != "PyPy"
pydantic-core==2.14.6 ; python_version >= "3.8" and python_version < "3.13"
pydantic==2.5.3 ; python_version >= "3.8" and python_version < "3.13"
pydantic-core==2.16.1 ; python_version >= "3.8" and python_version < "3.13"
pydantic==2.6.0 ; python_version >= "3.8" and python_version < "3.13"
tomli==2.0.1 ; python_version >= "3.8" and python_version < "3.11"
types-bleach==6.1.0.1 ; python_version >= "3.8" and python_version < "3.13"
types-boto==2.49.18.9 ; python_version >= "3.8" and python_version < "3.13"
types-contextvars==2.4.7.3 ; python_version >= "3.8" and python_version < "3.13"
types-dataclasses==0.6.6 ; python_version >= "3.8" and python_version < "3.13"
types-docutils==0.20.0.20240126 ; python_version >= "3.8" and python_version < "3.13"
types-markdown==3.5.0.20240106 ; python_version >= "3.8" and python_version < "3.13"
types-docutils==0.20.0.20240201 ; python_version >= "3.8" and python_version < "3.13"
types-markdown==3.5.0.20240129 ; python_version >= "3.8" and python_version < "3.13"
types-paramiko==3.4.0.20240120 ; python_version >= "3.8" and python_version < "3.13"
types-pkg-resources==0.1.3 ; python_version >= "3.8" and python_version < "3.13"
types-python-dateutil==2.8.19.20240106 ; python_version >= "3.8" and python_version < "3.13"
Expand Down

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