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Enable all-vs-all collection analysis patterns. #3311

Enable all-vs-all collection analysis patterns.

Enable all-vs-all collection analysis patterns. #3311

name: Test Galaxy packages for Pulsar
on:
push:
paths-ignore:
- 'client/**'
- 'doc/**'
- 'lib/galaxy_test/selenium/**'
pull_request:
paths-ignore:
- 'client/**'
- 'doc/**'
- 'lib/galaxy_test/selenium/**'
concurrency:
group: ${{ github.workflow }}-${{ github.ref }}
cancel-in-progress: true
jobs:
test:
name: Test
runs-on: ubuntu-latest
strategy:
fail-fast: false
matrix:
python-version: ['3.7'] # don't upgrade, see https://github.com/galaxyproject/galaxy/pull/16649
steps:
- uses: actions/checkout@v3
with:
path: 'galaxy root'
- uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}
- name: Cache pip dir
uses: actions/cache@v3
with:
path: ~/.cache/pip
key: pip-cache-${{ matrix.python-version }}-${{ hashFiles('galaxy root/requirements.txt') }}
- name: Install Apptainer's singularity
uses: eWaterCycle/setup-apptainer@v2
- name: Install ffmpeg
run: sudo apt-get update && sudo apt-get -y install ffmpeg
- name: Install tox
run: pip install tox
- name: Run tests
run: tox -e test_galaxy_packages_for_pulsar
working-directory: 'galaxy root'