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Fail "Run tests" step for any planemo test failure
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nsoranzo committed Jun 28, 2022
1 parent 18b288e commit 2b3ce7a
Showing 1 changed file with 4 additions and 5 deletions.
9 changes: 4 additions & 5 deletions .github/workflows/converter_tests.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -49,8 +49,6 @@ jobs:
run: rsync -av --remove-source-files --exclude .git galaxy-test-data/ 'galaxy root/test-data/'
- name: Install planemo
run: pip install planemo
- name: Install jq
run: sudo apt-get install jq
- name: Determine converters to check
run: |
ls 'galaxy root'/lib/galaxy/datatypes/converters/*xml | grep -v -f 'galaxy root'/lib/galaxy/datatypes/converters/.tt_skip > tool_list.txt
Expand All @@ -67,16 +65,17 @@ jobs:
- name: Run tests
run: |
mkdir -p json_output
EXIT_CODE=0
mapfile -t TOOL_ARRAY < tool_list.txt
for CONVERTER in "${TOOL_ARRAY[@]}"; do
json=$(mktemp -u -p json_output --suff .json)
planemo test --test_output_json "$json" --galaxy_python_version ${{ matrix.python-version }} --galaxy_root 'galaxy root' "$CONVERTER" || true
planemo test --test_output_json "$json" --galaxy_python_version ${{ matrix.python-version }} --galaxy_root 'galaxy root' "$CONVERTER" || EXIT_CODE=$?
done
planemo merge_test_reports json_output/*.json tool_test_output.json
planemo test_reports tool_test_output.json --test_output tool_test_output.html
if jq '.["tests"][]["data"]["status"]' tool_test_output.json | grep -v "success"; then
if [ "$EXIT_CODE" -ne 0 ]; then
echo "Unsuccessful tests found, inspect the 'Converter test results' artifact for details."
exit 1
exit $EXIT_CODE
fi
- uses: actions/upload-artifact@v3
if: failure()
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