Merge pull request #19127 from itisAliRH/cytoscape-npm-package

Replace static Cytoscape plugin with npm package

client/gulpfile.js

@@ -15,7 +15,6 @@ const xml2js = require("xml2js");
 const STATIC_PLUGIN_BUILD_IDS = [
     "annotate_image",
     "chiraviz",
-    "cytoscape",
     "drawrna",
     "editor",
     "example",
@@ -37,7 +36,7 @@ const STATIC_PLUGIN_BUILD_IDS = [
     "ts_visjs",
     "venn",
 ];
-const INSTALL_PLUGIN_BUILD_IDS = ["ngl", "msa", "openlayers", "vizarr"]; // todo: derive from XML
+const INSTALL_PLUGIN_BUILD_IDS = ["cytoscape", "ngl", "msa", "openlayers", "vizarr"]; // todo: derive from XML
 const DIST_PLUGIN_BUILD_IDS = ["new_user"];
 const PLUGIN_BUILD_IDS = Array.prototype.concat(DIST_PLUGIN_BUILD_IDS, STATIC_PLUGIN_BUILD_IDS);
 

config/plugins/visualizations/cytoscape/config/cytoscape.xml

@@ -13,7 +13,10 @@
     <params>
         <param type="dataset" var_name_in_template="hda" required="true">dataset_id</param>
     </params>
-    <entry_point entry_point_type="chart" src="script.js"/>
+    <requirements>
+        <requirement type="npm" version="0.0.2" package="@galaxyproject/cytoscape"/>
+    </requirements>
+    <entry_point entry_point_type="script" src="dist/index.js" css="dist/index.css" />
     <settings>
         <input>
             <label>Curve style</label>
@@ -69,10 +72,6 @@
                     <label>Grid</label>
                     <value>grid</value>
                 </data>
-                <data>
-                    <label>Null</label>
-                    <value>null</value>
-                </data>
                 <data>
                     <label>Preset</label>
                     <value>preset</value>
@@ -87,18 +86,7 @@
             <label>Directed/Undirected</label>
             <name>directed</name>
             <help>Select a kind of edge.</help>
-            <type>select</type>
-            <display>radio</display>
-            <data>
-                <data>
-                    <label>Directed</label>
-                    <value>triangle</value>
-                </data>
-                <data>
-                    <label>Undirected</label>
-                    <value></value>
-                </data>
-            </data>
+            <type>boolean</type>
         </input>
         <input>
             <label>Graph algorithms</label>
@@ -115,10 +103,6 @@
                     <label>Depth First Search</label>
                     <value>dfs</value>
                 </data>
-                <data>
-                    <label>Depth First Search</label>
-                    <value>dfs</value>
-                </data>
                 <data>
                     <label>Minimum Spanning Tree (Kruskal)</label>
                     <value>kruskal</value>