Galaxy Communities Dock (Galaxy CoDex) is a catalog of resources for Galaxy communities.
Currently, we have two main resources:
- Galaxy Community Catalog: from tools, training & workflows
- Galaxy Labs: (led by Galaxy Australia!) main and tool panel content for communities to spin up subdomain pages
This repository stores the sources to build all of this content. The catalog is automatically updated every week.
Any Galaxy Community can be added to this project and benefit from the dedicated resources. Learn how to add your community in the dedicated GTN tutorial.
To generate interactive tables that can be embedded into Galaxy Labs (subdomains) and websites via an iframe. Learn how to generate the Galaxy Community Catalog in the dedicated GTN tutorial.
To generate GalaxyLab content, you can follow our documentation (to be added!). To spin up a GalaxyLab on your server, you can follow our documentation (to be added!).
| Column | Description |
|---|---|
| Suite ID | ID of Galaxy suite |
| Tool IDs | List of Galaxy tool IDs |
| Description | Description of the suite |
| Homepage | Homepage for tool |
| Suite version | Version of the Galaxy suite |
| Suite Conda package | Conda package used as requirement for the suite |
| Latest suite conda package version | Latest Conda package version on anaconda |
| Suite version status | Update status derived by comparing the suite version to the latest conda package version |
| ToolShed categories | |
| EDAM operations | EDAM operations extracted using bio.tools |
| EDAM reduced operations | EDAM operations where only the most specific terms are kept, i.e. all terms that are superclasses of other terms are removed |
| EDAM topics | EDAM topics extracted using bio.tools |
| EDAM reduced topics | EDAM topics where only the most specific terms are kept, i.e. all terms that are superclasses of other terms are removed |
| Suite owner | Owner of the Galaxy suite |
| Suite source | Path to the Galaxy suite |
| bio.tools ID | ID of the bio.tools entry corresponding to the tool |
| bio.tools name | Name of the bio.tools entry corresponding to the tool |
| bio.tools description | Description in bio.tools entry corresponding to the tool |
| bii ID | ID of BII entry corresponding to the tool |
| Number of tools available on ... | Number of tools available on given Galaxy server |
| Suite users (last 5 years) on ... | Number of users of the suite in the last 5 years on given Galaxy server |
| Suite users on ... | Number of users of the suite on given Galaxy server |
| Suite runs (last 5 years) on ... | Number of runs of the suite tools in the last 5 years on given Galaxy server |
| Suite runs on ... | Number of runs of the suite tools on given Galaxy server |
| Suite users (last 5 years) on main servers | Number of users of the suite in the last 5 years on all UseGalaxy servers |
| Suite users on main servers | Number of users of the suite on all UseGalaxy servers |
| Suite runs (last 5 years) on main servers | Number of runs of the suite tools in the last 5 years on all UseGalaxy servers |
| Suite runs on main servers | Number of runs of the suite tools on all UseGalaxy servers |
| Deprecated | Deprecation status after review by a domain expert |
| To keep | Status to add to a community after review by a domain expert |
Galaxy Lab: Formerly known as Subdomains, Galaxy Australia built a new method for generating the main and tool panels for a Galaxy subdomain, known as a Galaxy Lab. Galaxy Community: Galaxy Community of Practice. You can see a full list of Special Interest Groups in the SIG Directory.