Merge pull request #492 from planemo-autoupdate/workflows/VGP-assembl…

…y-v2/Scaffolding-HiC-VGP8 Updating workflows/VGP-assembly-v2/Scaffolding-HiC-VGP8 from 0.2.5 to 0.2.6
galaxyproject · Aug 7, 2024 · 06c877f · 06c877f
2 parents f668926 + dfb599f
commit 06c877f
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diff --git a/workflows/VGP-assembly-v2/Scaffolding-HiC-VGP8/CHANGELOG.md b/workflows/VGP-assembly-v2/Scaffolding-HiC-VGP8/CHANGELOG.md
@@ -1,5 +1,10 @@
 # Changelog
 
+## [0.2.6] 2024-08-05
+
+### Automatic update
+- `toolshed.g2.bx.psu.edu/repos/iuc/yahs/yahs/1.2a.2+galaxy1` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/yahs/yahs/1.2a.2+galaxy2`
+
 ## [0.2.5] 2024-07-31
 
 - Addition of Workflow report

diff --git a/workflows/VGP-assembly-v2/Scaffolding-HiC-VGP8/Scaffolding-HiC-VGP8.ga b/workflows/VGP-assembly-v2/Scaffolding-HiC-VGP8/Scaffolding-HiC-VGP8.ga
@@ -15,7 +15,7 @@
     ],
     "format-version": "0.1",
     "license": "CC-BY-4.0",
-    "release": "0.2.5",
+    "release": "0.2.6",
     "name": "Scaffolding-HiC-VGP8",
     "report": {
         "markdown": "# Workflow Execution Report\n\nTime workflow was invoked\n\n```galaxy\ninvocation_time()\n```\n\n```galaxy\ngenerate_galaxy_version()\n```\n\n\n## BUSCO results (Vertebrata database)\n\n\n```galaxy\nhistory_dataset_as_image(output=\"Busco Summary image\")\n```\n\n\n## Assembly statistics\n\n\n```galaxy\nhistory_dataset_as_table(output=\"clean_stats\")\n```\n\n\n## Nx and Size plots\n\n\n```galaxy\nhistory_dataset_as_image(output=\"Nx Plot\")\n```\n\n\n```galaxy\nhistory_dataset_as_image(output=\"Size Plot\")\n```\n\n## PretextMap\n\n### Before Scaffolding\n\n\r\n```galaxy\nhistory_dataset_as_image(output=\"Pretext Map Before HiC scaffolding\")\n```\r\n\n\n### After Scaffolding\r\n```galaxy\nhistory_dataset_as_image(output=\"Pretext Map After HiC scaffolding\")\n```\r\n\n\n\n\n## Current Workflow\n```galaxy\nworkflow_display()\n```\n"
@@ -541,7 +541,7 @@
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+            "content_id": "toolshed.g2.bx.psu.edu/repos/iuc/yahs/yahs/1.2a.2+galaxy2",
             "errors": null,
             "id": 14,
             "input_connections": {
@@ -618,15 +618,15 @@
                     "output_name": "log_file"
                 }
             },
-            "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/yahs/yahs/1.2a.2+galaxy1",
+            "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/yahs/yahs/1.2a.2+galaxy2",
             "tool_shed_repository": {
-                "changeset_revision": "425e63adcc5d",
+                "changeset_revision": "ff4031bfaa22",
                 "name": "yahs",
                 "owner": "iuc",
                 "tool_shed": "toolshed.g2.bx.psu.edu"
             },
             "tool_state": "{\"function\": {\"function_select\": \"yahs\", \"__current_case__\": 0, \"fasta\": {\"__class__\": \"ConnectedValue\"}, \"bfile\": {\"__class__\": \"ConnectedValue\"}, \"agp\": {\"__class__\": \"ConnectedValue\"}, \"res\": \"\", \"enzyme_conditional\": {\"enzyme_options\": \"preconfigured\", \"__current_case__\": 1, \"preconfigured_enzymes\": {\"__class__\": \"ConnectedValue\"}}, \"length\": null, \"quality\": null, \"no_contig_ec\": true, \"no_scaffold_ec\": false}, \"log_out\": true, \"__page__\": null, \"__rerun_remap_job_id__\": null}",
-            "tool_version": "1.2a.2+galaxy1",
+            "tool_version": "1.2a.2+galaxy2",
             "type": "tool",
             "uuid": "b3b3bfbc-39b4-4302-967a-220420e3fd36",
             "when": null,
@@ -1199,7 +1199,7 @@
                 "owner": "bgruening",
                 "tool_shed": "toolshed.g2.bx.psu.edu"
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+            "tool_state": "{\"find_and_replace\": [{\"__index__\": 0, \"find_pattern\": \"#\", \"replace_pattern\": \"Number of\", \"is_regex\": false, \"global\": true, \"caseinsensitive\": false, \"wholewords\": false, \"skip_first_line\": false, \"searchwhere\": {\"searchwhere_select\": \"line\", \"__current_case__\": 0}}], \"infile\": {\"__class__\": \"ConnectedValue\"}, \"__page__\": null, \"__rerun_remap_job_id__\": null}",
             "tool_version": "9.3+galaxy1",
             "type": "tool",
             "uuid": "4b0a88b6-47cc-4381-949c-fc18a99799ac",
@@ -1575,7 +1575,7 @@
                     }
                 },
                 "tags": [],
-                "uuid": "0a29c4ba-6eeb-4812-85dd-4c5a5682d8cf"
+                "uuid": "b30c8dd0-24e7-4e74-ad9b-5fefd27893fa"
             },
             "tool_id": null,
             "type": "subworkflow",
@@ -2070,4 +2070,4 @@
     ],
     "uuid": "88cb8c3c-791b-4ab8-b982-4811f6f94630",
     "version": 5
-}
+}