From 3fdd51c796fbdd3a9fa9a80318abc65692cdf9bf Mon Sep 17 00:00:00 2001 From: planemo-autoupdate Date: Mon, 27 May 2024 13:17:39 +0000 Subject: [PATCH 1/3] Updating workflows/data-fetching/parallel-accession-download from 0.1.13 to 0.1.14 --- .../parallel-accession-download/CHANGELOG.md | 5 +++++ .../parallel-accession-download.ga | 10 +++++----- 2 files changed, 10 insertions(+), 5 deletions(-) diff --git a/workflows/data-fetching/parallel-accession-download/CHANGELOG.md b/workflows/data-fetching/parallel-accession-download/CHANGELOG.md index 3774f8bbd..7817c4896 100644 --- a/workflows/data-fetching/parallel-accession-download/CHANGELOG.md +++ b/workflows/data-fetching/parallel-accession-download/CHANGELOG.md @@ -1,5 +1,10 @@ # Changelog +## [0.1.14] 2024-05-27 + +### Automatic update +- `toolshed.g2.bx.psu.edu/repos/bgruening/split_file_to_collection/split_file_to_collection/0.5.1` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/split_file_to_collection/split_file_to_collection/0.5.2` + ## [0.1.13] 2024-04-22 ### Automatic update diff --git a/workflows/data-fetching/parallel-accession-download/parallel-accession-download.ga b/workflows/data-fetching/parallel-accession-download/parallel-accession-download.ga index aab36c553..79e3e94cd 100644 --- a/workflows/data-fetching/parallel-accession-download/parallel-accession-download.ga +++ b/workflows/data-fetching/parallel-accession-download/parallel-accession-download.ga @@ -16,7 +16,7 @@ ], "format-version": "0.1", "license": "MIT", - "release": "0.1.13", + "release": "0.1.14", "name": "Parallel Accession Download", "steps": { "0": { @@ -48,7 +48,7 @@ }, "1": { "annotation": "", - "content_id": "toolshed.g2.bx.psu.edu/repos/bgruening/split_file_to_collection/split_file_to_collection/0.5.1", + "content_id": "toolshed.g2.bx.psu.edu/repos/bgruening/split_file_to_collection/split_file_to_collection/0.5.2", "errors": null, "id": 1, "input_connections": { @@ -82,15 +82,15 @@ "output_name": "list_output_txt" } }, - "tool_id": "toolshed.g2.bx.psu.edu/repos/bgruening/split_file_to_collection/split_file_to_collection/0.5.1", + "tool_id": "toolshed.g2.bx.psu.edu/repos/bgruening/split_file_to_collection/split_file_to_collection/0.5.2", "tool_shed_repository": { - "changeset_revision": "baabc30154cd", + "changeset_revision": "2dae863c8f42", "name": "split_file_to_collection", "owner": "bgruening", "tool_shed": "toolshed.g2.bx.psu.edu" }, "tool_state": "{\"split_parms\": {\"select_ftype\": \"txt\", \"__current_case__\": 5, \"input\": {\"__class__\": \"ConnectedValue\"}, \"select_mode\": {\"mode\": \"chunk\", \"__current_case__\": 0, \"chunksize\": \"1\"}, \"newfilenames\": \"split_file\", \"select_allocate\": {\"allocate\": \"byrow\", \"__current_case__\": 2}}, \"__page__\": null, \"__rerun_remap_job_id__\": null}", - "tool_version": "0.5.1", + "tool_version": "0.5.2", "type": "tool", "uuid": "f8d776ff-e1ba-4bde-9b4b-392d825fd2b7", "when": null, From 57489da5844645711ba3ed3ddf18f855cf003b74 Mon Sep 17 00:00:00 2001 From: planemo-autoupdate Date: Mon, 10 Jun 2024 04:23:56 +0000 Subject: [PATCH 2/3] Updating workflows/data-fetching/parallel-accession-download from 0.1.14 to 0.1.15 --- .../parallel-accession-download.ga | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/workflows/data-fetching/parallel-accession-download/parallel-accession-download.ga b/workflows/data-fetching/parallel-accession-download/parallel-accession-download.ga index 79e3e94cd..54ee75f1f 100644 --- a/workflows/data-fetching/parallel-accession-download/parallel-accession-download.ga +++ b/workflows/data-fetching/parallel-accession-download/parallel-accession-download.ga @@ -16,7 +16,7 @@ ], "format-version": "0.1", "license": "MIT", - "release": "0.1.14", + "release": "0.1.15", "name": "Parallel Accession Download", "steps": { "0": { @@ -98,7 +98,7 @@ }, "2": { "annotation": "", - "content_id": "toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fasterq_dump/3.1.0+galaxy1", + "content_id": "toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fasterq_dump/3.1.1+galaxy0", "errors": null, "id": 2, "input_connections": { @@ -159,15 +159,15 @@ "output_name": "output_collection_other" } }, - "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fasterq_dump/3.1.0+galaxy1", + "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fasterq_dump/3.1.1+galaxy0", "tool_shed_repository": { - "changeset_revision": "f8054ea1c365", + "changeset_revision": "516a54ddf218", "name": "sra_tools", "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, "tool_state": "{\"adv\": {\"seq_defline\": \"@$sn/$ri\", \"minlen\": null, \"split\": \"--split-3\", \"skip_technical\": true}, \"input\": {\"input_select\": \"file_list\", \"__current_case__\": 2, \"file_list\": {\"__class__\": \"ConnectedValue\"}}, \"__page__\": null, \"__rerun_remap_job_id__\": null}", - "tool_version": "3.1.0+galaxy1", + "tool_version": "3.1.1+galaxy0", "type": "tool", "uuid": "4d328e7b-df7d-4d3e-a60f-1ea12925f317", "when": null, From 6d7fd0f541fa9313c99d94ff3bdf08c0cff45428 Mon Sep 17 00:00:00 2001 From: Lucille Delisle Date: Mon, 10 Jun 2024 15:01:37 +0200 Subject: [PATCH 3/3] fix CHANGELOG and workflow version --- .../data-fetching/parallel-accession-download/CHANGELOG.md | 1 + .../parallel-accession-download/parallel-accession-download.ga | 2 +- 2 files changed, 2 insertions(+), 1 deletion(-) diff --git a/workflows/data-fetching/parallel-accession-download/CHANGELOG.md b/workflows/data-fetching/parallel-accession-download/CHANGELOG.md index 7817c4896..cdc8e713b 100644 --- a/workflows/data-fetching/parallel-accession-download/CHANGELOG.md +++ b/workflows/data-fetching/parallel-accession-download/CHANGELOG.md @@ -4,6 +4,7 @@ ### Automatic update - `toolshed.g2.bx.psu.edu/repos/bgruening/split_file_to_collection/split_file_to_collection/0.5.1` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/split_file_to_collection/split_file_to_collection/0.5.2` +- `toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fasterq_dump/3.1.0+galaxy1` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fasterq_dump/3.1.1+galaxy0` ## [0.1.13] 2024-04-22 diff --git a/workflows/data-fetching/parallel-accession-download/parallel-accession-download.ga b/workflows/data-fetching/parallel-accession-download/parallel-accession-download.ga index 54ee75f1f..e2629e0f1 100644 --- a/workflows/data-fetching/parallel-accession-download/parallel-accession-download.ga +++ b/workflows/data-fetching/parallel-accession-download/parallel-accession-download.ga @@ -16,7 +16,7 @@ ], "format-version": "0.1", "license": "MIT", - "release": "0.1.15", + "release": "0.1.14", "name": "Parallel Accession Download", "steps": { "0": {